Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 4.1e-159 564.7 285 100.0
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 2.3e-85 319.7 239 70.7
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 1.4e-79 300.4 238 63.4
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 4.6e-78 295.4 241 64.3
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 3.9e-77 292.4 237 65.0
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 6.6e-77 291.6 244 62.7
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 1.5e-76 290.4 240 62.1
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 4.3e-76 288.9 216 67.6
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 5.6e-76 288.5 240 63.3
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 1.6e-75 287.0 239 64.4
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 2.4e-74 283.1 217 65.4
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 4.0e-74 282.3 216 66.7
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 6.9e-74 281.6 239 62.8
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 1.2e-73 280.8 243 60.9
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 1.2e-73 280.8 237 59.9
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 7.6e-73 278.1 216 65.3
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 9.9e-73 277.7 216 65.3
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 1.7e-72 276.9 238 60.1
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 2.2e-72 276.6 234 60.3
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 2.2e-72 276.6 233 60.1
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 6.4e-72 275.0 217 65.0
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 1.4e-71 273.9 266 59.4
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 3.2e-71 272.7 216 64.4
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 3.2e-71 272.7 244 58.6
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 5.4e-71 271.9 249 57.0
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 9.3e-71 271.2 243 59.3
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.1e-70 270.0 263 56.7
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.1e-70 270.0 263 56.7
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 2.7e-70 269.6 220 60.0
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.7e-70 269.6 239 59.8
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.5e-70 269.2 263 56.7
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 4.6e-70 268.9 216 62.5
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.0e-69 267.7 263 56.3
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.0e-69 267.7 263 56.3
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 1.0e-69 267.7 240 58.8
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.7e-69 266.9 239 58.6
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 1.5e-68 263.8 220 58.6
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 4.8e-67 258.8 216 58.3
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 2.4e-66 256.5 222 56.8
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 3.1e-66 256.1 220 58.2
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 4.0e-66 255.8 223 56.1
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 5.3e-66 255.4 222 56.8
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 5.3e-66 255.4 217 58.5
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 1.2e-65 254.2 220 56.8
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 1.5e-65 253.8 223 56.1
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 2.6e-65 253.1 239 53.6
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 7.6e-65 251.5 245 54.7
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 1.7e-64 250.4 217 60.4
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 2.2e-64 250.0 217 58.1
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 2.2e-64 250.0 244 52.9
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 2.9e-64 249.6 240 55.8
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 3.8e-64 249.2 239 54.4
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 1.9e-63 246.9 220 55.5
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 3.2e-63 246.1 220 55.9
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 9.3e-63 244.6 224 62.5
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 2.7e-62 243.0 220 55.5
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 7.9e-62 241.5 241 52.7
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 1.3e-61 240.7 246 53.7
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 1.3e-61 240.7 220 53.6
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 1.8e-61 240.4 230 54.3
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 3.9e-61 239.2 231 54.5
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 6.7e-61 238.4 216 56.5
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 1.9e-60 236.9 240 54.6
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 2.5e-60 236.5 216 56.0
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 7.4e-60 235.0 294 47.6
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 9.6e-60 234.6 220 53.2
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 1.3e-59 234.2 208 55.8
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 1.6e-59 233.8 228 55.3
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 2.0e-57 226.9 224 52.2
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 5.8e-57 225.3 273 48.7
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 1.3e-56 224.2 202 58.9
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 2.2e-56 223.4 202 58.9
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 4.9e-56 222.2 202 58.4
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 1.6e-54 217.2 222 51.4
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 4.6e-54 215.7 224 49.6
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 3.3e-52 209.5 223 49.3
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 1.2e-46 191.0 154 64.9
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 1.2e-46 191.0 216 47.7
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 1.6e-46 190.7 170 61.2
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 5.1e-45 185.7 130 69.2
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 4.1e-42 176.0 158 59.5
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 9.1e-18 95.1 209 31.1
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 4.5e-09 66.2 61 54.1


User provided reference genes

Program Settings