Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.0e-108 396.4 297 100.0
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 6.4e-107 391.3 299 99.3
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 7.6e-92 341.3 306 76.5
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 4.5e-84 315.5 314 66.2
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 7.6e-84 314.7 297 72.1
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 2.9e-83 312.8 296 68.2
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 6.4e-83 311.6 300 71.7
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 6.4e-83 311.6 341 67.2
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 1.8e-80 303.5 297 80.5
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 3.0e-80 302.8 300 69.0
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 6.7e-80 301.6 301 69.1
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.1e-79 300.8 276 76.1
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.5e-79 300.4 300 70.3
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 2.5e-79 299.7 300 67.0
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 3.3e-79 299.3 309 66.7
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 4.3e-79 298.9 299 67.6
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 5.6e-79 298.5 301 62.8
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 2.8e-78 296.2 302 63.6
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 4.8e-78 295.4 307 68.1
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 6.2e-78 295.0 306 71.6
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.4e-77 293.9 306 71.2
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.4e-77 293.9 302 63.2
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 1.8e-77 293.5 308 77.6
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 5.3e-77 292.0 304 69.1
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 6.9e-77 291.6 316 64.6
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 9.0e-77 291.2 306 68.0
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 1.2e-76 290.8 298 69.1
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.5e-76 290.4 273 69.6
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 2.0e-76 290.0 304 63.2
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.0e-76 290.0 296 79.1
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 4.5e-76 288.9 300 65.0
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.8e-76 288.5 303 77.9
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 7.6e-76 288.1 300 65.0
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 2.9e-75 286.2 302 60.6
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 2.9e-75 286.2 301 63.8
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 2.9e-75 286.2 305 57.7
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.4e-74 283.9 302 54.3
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 4.2e-74 282.3 301 65.8
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 4.2e-74 282.3 305 66.6
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 4.2e-74 282.3 305 63.0
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 9.3e-74 281.2 296 55.1
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.6e-73 280.4 302 74.5
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 1.6e-73 280.4 293 63.8
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 2.7e-73 279.6 305 63.3
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 1.8e-72 276.9 305 61.6
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.3e-72 276.6 309 61.2
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 2.3e-72 276.6 300 78.3
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 2.3e-72 276.6 300 78.3
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 3.0e-72 276.2 298 53.7
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 6.7e-72 275.0 301 57.5
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 8.7e-72 274.6 315 64.1
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 8.7e-72 274.6 297 59.3
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 1.5e-71 273.9 304 58.9
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.5e-71 273.1 311 52.4
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 4.3e-71 272.3 297 59.9
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 9.7e-71 271.2 293 78.8
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 9.7e-71 271.2 300 63.0
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.3e-70 270.8 309 57.6
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 2.2e-70 270.0 301 64.1
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 4.8e-70 268.9 332 67.2
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 1.1e-69 267.7 305 56.1
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 4.1e-69 265.8 299 67.2
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 4.1e-69 265.8 296 58.8
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 5.3e-69 265.4 306 57.2
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 6.9e-69 265.0 306 73.5
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 5.9e-68 261.9 306 58.5
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.7e-67 260.4 295 68.5
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.7e-67 260.4 302 74.5
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.9e-67 259.6 268 55.2
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 5.0e-67 258.8 305 71.8
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.1e-66 257.7 296 51.0
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.4e-66 257.3 300 72.3
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 1.2e-65 254.2 305 75.1
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 2.1e-65 253.4 303 52.1
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 4.6e-65 252.3 247 69.6
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.8e-64 250.4 303 49.8
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 3.9e-64 249.2 302 61.3
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 3.9e-64 249.2 310 70.3
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 5.1e-64 248.8 303 49.5
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 6.7e-64 248.4 312 69.9
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 5.7e-63 245.4 298 60.1
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 1.3e-62 244.2 302 71.2
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 6.3e-62 241.9 304 64.1
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 8.2e-62 241.5 298 49.0
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 2.4e-61 240.0 195 67.2
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 3.1e-61 239.6 341 60.1
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 2.0e-60 236.9 308 56.2
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 2.6e-60 236.5 330 55.2
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 7.7e-60 235.0 287 55.1
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 5.0e-59 232.3 303 57.8
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.9e-58 230.3 294 74.1
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 5.5e-58 228.8 275 62.9
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 9.4e-58 228.0 302 59.9
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 9.4e-58 228.0 302 59.9
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 9.4e-58 228.0 302 59.9
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 9.4e-58 228.0 171 68.4
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 2.1e-57 226.9 292 53.4
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.7e-57 226.5 302 54.6
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.7e-57 226.5 302 54.6
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 7.9e-57 224.9 362 59.9
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 2.3e-56 223.4 298 64.1
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 8.8e-56 221.5 304 68.1
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 8.8e-56 221.5 289 53.6
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 8.2e-54 214.9 339 51.0
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.1e-53 214.5 300 58.7
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.8e-53 213.8 273 71.8
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 9.1e-53 211.5 321 55.8
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.1e-45 188.0 189 52.9
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 8.3e-38 161.8 158 74.1
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 3.1e-37 159.8 180 49.4
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 4.2e-34 149.4 155 78.1
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 4.7e-33 146.0 102 71.6
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.3e-32 143.7 189 46.6
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.3e-30 137.9 178 43.8
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 5.9e-28 129.0 120 55.8
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 6.6e-27 125.6 102 62.7
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.5e-23 114.4 137 48.2
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 2.2e-22 110.5 226 36.7
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 1.0e-19 101.7 129 58.1
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 2.8e-17 93.6 136 50.7
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.4e-16 91.3 122 52.5
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.2e-15 88.2 48 83.3
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 2.9e-14 83.6 53 81.1
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 8.3e-14 82.0 51 72.5
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 1.1e-13 81.6 51 72.5
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 2.3e-11 73.9 46 71.7
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 3.9e-11 73.2 54 68.5
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 4.3e-10 69.7 43 72.1
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 4.3e-10 69.7 43 72.1
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 5.2e-08 62.8 86 41.9
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.0e-07 60.8 29 93.1
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 5.8e-07 59.3 58 60.3
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.3e-06 58.2 29 89.7
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.7e-06 56.6 49 55.1
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 6.4e-06 55.8 91 29.7
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 8.3e-06 55.5 49 53.1
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 8.3e-06 55.5 51 51.0
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 8.3e-06 55.5 45 57.8


User provided reference genes

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