Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017539 Camellia sinensis var. sinensis HOM05D006445 ORTHO05D008030 3.6e-70 268.1 130 100.0
CSS0046825 Camellia sinensis var. sinensis HOM05D002698 ORTHO05D002903 1.8e-29 132.9 69 92.8
CSS0014472 Camellia sinensis var. sinensis HOM05D006445 ORTHO05D008030 4.7e-22 108.2 56 91.1
CSS0045965 Camellia sinensis var. sinensis HOM05D002698 ORTHO05D002903 1.6e-17 93.2 75 65.3
Nitab4.5_0002446g0090 Nicotiana tabacum HOM05D006445 ORTHO05D008030 7.3e-15 84.3 55 72.7
Dinv14061 Davidia involucrata HOM05D006445 ORTHO05D008030 2.8e-14 82.4 56 73.2
Rhsim02G0031200 Rhododendron simsii HOM05D006445 ORTHO05D008030 8.1e-14 80.9 55 70.9
vmacro15391 Vaccinium macrocarpon HOM05D006445 ORTHO05D008030 4.0e-13 78.6 55 70.9
Ciclev10004554m.g Citrus clementina HOM05D006445 ORTHO05D008030 5.3e-13 78.2 56 64.3
Actinidia18525 Actinidia chinensis HOM05D006445 ORTHO05D008030 6.9e-13 77.8 55 70.9
Nitab4.5_0000321g0290 Nicotiana tabacum HOM05D006445 ORTHO05D008030 6.9e-13 77.8 55 67.3
Actinidia08458 Actinidia chinensis HOM05D006445 ORTHO05D008030 9.0e-13 77.4 55 70.9
Peaxi162Scf00131g00510 Petunia axillaris HOM05D006445 ORTHO05D008030 1.2e-12 77.0 59 62.7
MSTRG.4074 Avicennia marina HOM05D006445 ORTHO05D008030 2.0e-12 76.3 56 69.6
TAR362G0995 Trochodendron aralioides HOM05D006445 ORTHO05D008030 3.4e-12 75.5 54 70.4
TAR549G0008 Trochodendron aralioides HOM05D006445 ORTHO05D008030 4.4e-12 75.1 55 69.1
TAR633G2087 Trochodendron aralioides HOM05D006445 ORTHO05D008030 4.4e-12 75.1 55 69.1
PGSC0003DMG400016314 Solanum tuberosum HOM05D006445 ORTHO05D008030 5.8e-12 74.7 62 62.9
CAN.G231.21 Capsicum annuum HOM05D006445 ORTHO05D008030 1.3e-11 73.6 55 63.6
Sabra08G0121600 Salix brachista HOM05D006445 ORTHO05D008030 2.9e-11 72.4 57 64.9
Solyc06g053920.4 Solanum lycopersicum HOM05D006445 ORTHO05D008030 2.9e-11 72.4 62 62.9
Cc03_g04450 Coffea canephora HOM05D006445 ORTHO05D008030 3.8e-11 72.0 56 64.3
Prupe.1G023800 Prunus persica HOM05D006445 ORTHO05D008030 3.8e-11 72.0 56 62.5
QL06p000554 Quercus lobata HOM05D006445 ORTHO05D008030 6.4e-11 71.2 56 64.3
RcHm_v2.0_Chr4g0388821 Rosa chinensis HOM05D006445 ORTHO05D008030 6.4e-11 71.2 55 65.5
Migut.G00407 Erythranthe guttata HOM05D006445 ORTHO05D008030 1.1e-10 70.5 61 65.6
GSVIVG01018073001 Vitis vinifera HOM05D006445 ORTHO05D008030 1.1e-10 70.5 56 60.7
Oeu064236.1 Olea europaea HOM05D006445 ORTHO05D008030 1.4e-10 70.1 54 63.0
SalBow2G0732 Salvia bowleyana HOM05D006445 ORTHO05D008030 1.4e-10 70.1 54 66.7
TWI09G0629 Tripterygium wilfordii HOM05D006445 ORTHO05D008030 1.4e-10 70.1 55 61.8
Sopen06g019080 Solanum pennellii HOM05D006445 ORTHO05D008030 1.9e-10 69.7 62 59.7
Thecc.04G241400 Theobroma cacao HOM05D006445 ORTHO05D008030 1.9e-10 69.7 56 58.9
CiPaw.01G193800 Carya illinoinensis HOM05D006445 ORTHO05D008030 2.4e-10 69.3 56 62.5
Lj6A648T26 Lonicera japonica HOM05D006445 ORTHO05D008030 2.4e-10 69.3 55 60.0
Atru.chr4.2321 Acer truncatum HOM05D006445 ORTHO05D008030 3.2e-10 68.9 56 62.5
Duzib151G0014 Durio zibethinus HOM05D006445 ORTHO05D008030 3.2e-10 68.9 56 58.9
MELO3C014278.2 Cucumis melo HOM05D006445 ORTHO05D008030 4.2e-10 68.6 56 55.4
CsaV3_2G013340 Cucumis sativus L. HOM05D006445 ORTHO05D008030 4.2e-10 68.6 56 55.4
Potri.008G159500 Populus trichocarpa HOM05D006445 ORTHO05D008030 4.2e-10 68.6 58 60.3
Lalb_Chr03g0037581 Lupinus albus HOM05D006445 ORTHO05D008030 5.4e-10 68.2 56 62.5
FAN17G0812 Fragaria x ananassa HOM05D006445 ORTHO05D008030 7.1e-10 67.8 55 61.8
CSS0002004 Camellia sinensis var. sinensis HOM05D002698 ORTHO05D002903 9.3e-10 67.4 48 70.8
ClCG06G006550 Citrullus lanatus HOM05D006445 ORTHO05D008030 9.3e-10 67.4 56 55.4
FvH4_4g01790 Fragaria vesca HOM05D006445 ORTHO05D008030 9.3e-10 67.4 55 61.8
FAN12G4074 Fragaria x ananassa HOM05D006445 ORTHO05D008030 9.3e-10 67.4 55 61.8
Gohir.A09G220300 Gossypium hirsutum HOM05D006445 ORTHO05D008030 9.3e-10 67.4 58 58.6
DCAR_002362 Daucus carota HOM05D006445 ORTHO05D008030 1.2e-09 67.0 56 60.7
Eucgr.H03403 Eucalyptus grandis HOM05D006445 ORTHO05D008030 1.2e-09 67.0 56 62.5
Hma1.2p1_1095F.1_g256580 Hydrangea macrophylla HOM05D006445 ORTHO05D008030 1.2e-09 67.0 56 60.7
Rhsim02G0103900 Rhododendron simsii HOM05D002698 ORTHO05D002903 1.2e-09 67.0 43 76.7
Cfa008415 Carpinus fangiana HOM05D006445 ORTHO05D008030 2.1e-09 66.2 56 62.5
Haze_11252 Corylus avellana HOM05D006445 ORTHO05D008030 2.1e-09 66.2 63 60.3
Migut.G00392 Erythranthe guttata HOM05D006445 ORTHO05D008030 2.1e-09 66.2 52 69.2
FAN22G0464 Fragaria x ananassa HOM05D006445 ORTHO05D008030 2.1e-09 66.2 55 60.0
Gohir.D09G222500 Gossypium hirsutum HOM05D006445 ORTHO05D008030 2.1e-09 66.2 58 56.9
Gorai.006G243700 Gossypium raimondii HOM05D006445 ORTHO05D008030 2.1e-09 66.2 58 56.9
Hma1.2p1_0660F.1_g197560 Hydrangea macrophylla HOM05D002698 ORTHO05D002903 3.5e-09 65.5 47 74.5
Manes.03G171500 Manihot esculenta HOM05D006445 ORTHO05D008030 3.5e-09 65.5 55 56.4
Cc09_g00960 Coffea canephora HOM05D002698 ORTHO05D002903 4.6e-09 65.1 96 41.7
Cpa.g.sc44.136 Carica papaya HOM05D006445 ORTHO05D008030 7.8e-09 64.3 56 57.1
MD16G1202300 Malus domestica HOM05D006445 ORTHO05D008030 7.8e-09 64.3 55 60.0
Duzib212G0108 Durio zibethinus HOM05D006445 ORTHO05D008030 1.0e-08 63.9 56 57.1
EL10As20g24207 Beta vulgaris HOM05D006445 ORTHO05D008030 1.3e-08 63.5 51 66.7
arahy.Tifrunner.gnm1.ann1.G28WYQ Arachis hypogaea HOM05D006445 ORTHO05D008030 1.7e-08 63.2 54 59.3
COL.COLO4_13180 Corchorus olitorius HOM05D006445 ORTHO05D008030 1.7e-08 63.2 56 53.6
Glyma.09G009400 Glycine max HOM05D002698 ORTHO05D002903 1.7e-08 63.2 96 39.6
Hund20068 Selenicereus undatus HOM05D006445 ORTHO05D008030 3.0e-08 62.4 67 52.2
Phvul.007G279100 Phaseolus vulgaris HOM05D006445 ORTHO05D008030 3.9e-08 62.0 62 50.0
Manes.15G034000 Manihot esculenta HOM05D006445 ORTHO05D008030 5.1e-08 61.6 55 54.5
Nn3g19455 Nelumbo nucifera HOM05D006445 ORTHO05D008030 5.1e-08 61.6 55 56.4
Sc15g0003230 Simmondsia chinensis HOM05D006445 ORTHO05D008030 5.1e-08 61.6 63 52.4
Glyma.15G113900 Glycine max HOM05D002698 ORTHO05D002903 6.6e-08 61.2 94 38.3
SalBow1G0917 Salvia bowleyana HOM05D002698 ORTHO05D002903 6.6e-08 61.2 47 63.8
Ca_00713_v3 Cicer arietinum L. HOM05D002698 ORTHO05D002903 1.1e-07 60.5 47 59.6
SGA_v2.0_scaffold101G29748 Striga asiatica HOM05D006445 ORTHO05D008030 1.1e-07 60.5 58 62.1
vmacro15775 Vaccinium macrocarpon HOM05D002698 ORTHO05D002903 1.1e-07 60.5 43 69.8
TAR626G1298 Trochodendron aralioides HOM05D002698 ORTHO05D002903 1.5e-07 60.1 47 63.8
Os11g0586300 Oryza sativa ssp. japonica HOM05D006445 ORTHO05D008030 1.9e-07 59.7 62 56.5
MSTRG.7172 Avicennia marina HOM05D002698 ORTHO05D002903 2.5e-07 59.3 71 46.5
Glyma.02G001900 Glycine max HOM05D006445 ORTHO05D008030 2.5e-07 59.3 62 50.0
Nitab4.5_0013359g0020 Nicotiana tabacum HOM05D002698 ORTHO05D002903 2.5e-07 59.3 90 43.3
Lj6g0022017 Lotus japonicus HOM05D006445 ORTHO05D008030 3.3e-07 58.9 56 51.8
Atru.chr1.2479 Acer truncatum HOM05D002698 ORTHO05D002903 4.3e-07 58.5 47 68.1
arahy.Tifrunner.gnm1.ann1.38NIYD Arachis hypogaea HOM05D002698 ORTHO05D002903 4.3e-07 58.5 47 61.7
arahy.Tifrunner.gnm1.ann1.83IVCD Arachis hypogaea HOM05D002698 ORTHO05D002903 4.3e-07 58.5 47 61.7
Nitab4.5_0000143g0370 Nicotiana tabacum HOM05D002698 ORTHO05D002903 4.3e-07 58.5 47 66.0
Actinidia26869 Actinidia chinensis HOM05D002698 ORTHO05D002903 7.3e-07 57.8 32 81.2
ATR0665G293 Amborella trichopoda HOM05D006445 ORTHO05D008030 7.3e-07 57.8 56 53.6
Phvul.006G143900 Phaseolus vulgaris HOM05D002698 ORTHO05D002903 7.3e-07 57.8 47 59.6
Thecc.06G231800 Theobroma cacao HOM05D002698 ORTHO05D002903 1.3e-06 57.0 47 63.8
TPR.G32777 Trifolium pratense HOM05D006445 ORTHO05D008030 1.3e-06 57.0 56 53.6
Actinidia02321 Actinidia chinensis HOM05D002698 ORTHO05D002903 1.6e-06 56.6 32 81.2
Aqoxy5G00384 Aquilegia oxysepala HOM05D006445 ORTHO05D008030 1.6e-06 56.6 56 53.6
PSO675G2091 Papaver somniferum HOM05D006445 ORTHO05D008030 1.6e-06 56.6 54 53.7
Sed0027736 Sechium edule HOM05D006445 ORTHO05D008030 1.6e-06 56.6 56 48.2
VMungo0540G1252 Vigna mungo HOM05D002698 ORTHO05D002903 1.6e-06 56.6 92 35.9
TWI38G1017 Tripterygium wilfordii HOM05D002698 ORTHO05D002903 2.1e-06 56.2 61 47.5
Lalb_Chr20g0119181 Lupinus albus HOM05D002698 ORTHO05D002903 3.6e-06 55.5 46 60.9
Oeu044416.1 Olea europaea HOM05D002698 ORTHO05D002903 3.6e-06 55.5 79 40.5
unitig_749.g14084 Utricularia gibba HOM05D006445 ORTHO05D008030 3.6e-06 55.5 56 51.8
Ciclev10016689m.g Citrus clementina HOM05D002698 ORTHO05D002903 4.8e-06 55.1 47 63.8
Medtr1g041275 Medicago truncatula HOM05D006445 ORTHO05D008030 4.8e-06 55.1 56 51.8
QL10p003592 Quercus lobata HOM05D002698 ORTHO05D002903 4.8e-06 55.1 47 61.7
MSTRG.16018 Avicennia marina HOM05D002698 ORTHO05D002903 6.2e-06 54.7 78 42.3
Thhalv10020381m.g Eutrema salsugineum HOM05D006445 ORTHO05D008030 6.2e-06 54.7 52 53.8
Nn1g07341 Nelumbo nucifera HOM05D002698 ORTHO05D002903 6.2e-06 54.7 47 57.4
Psat6g103160 Pisum sativum HOM05D006445 ORTHO05D008030 6.2e-06 54.7 56 48.2
CANSAT78G1649 Cannabis sativa HOM05D006445 ORTHO05D008030 8.1e-06 54.3 55 52.7
Duzib192G0540 Durio zibethinus HOM05D002698 ORTHO05D002903 8.1e-06 54.3 47 59.6
HPP92_007968 Vanilla planifolia HOM05D006445 ORTHO05D008030 8.1e-06 54.3 50 52.0
VMungo0720G0393 Vigna mungo HOM05D006445 ORTHO05D008030 8.1e-06 54.3 56 51.8


User provided reference genes

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