Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.5e-61 239.2 113 100.0
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 2.6e-32 142.1 113 66.4
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 3.1e-30 135.2 117 65.8
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 7.0e-30 134.0 111 68.5
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 3.5e-29 131.7 115 65.2
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.1e-27 126.7 104 67.3
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 4.4e-24 114.8 100 63.0
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 9.8e-24 113.6 117 58.1
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.3e-23 113.2 113 56.6
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.9e-23 112.1 105 59.0
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.7e-23 111.7 106 59.4
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 4.9e-23 111.3 98 61.2
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 8.3e-23 110.5 112 59.8
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 8.3e-23 110.5 105 62.9
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 8.3e-23 110.5 105 62.9
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.4e-22 109.8 93 63.4
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 5.4e-22 107.8 103 61.2
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.6e-21 106.3 100 57.0
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.0e-21 105.9 111 55.0
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 2.0e-21 105.9 108 54.6
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.0e-21 105.9 94 59.6
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 2.7e-21 105.5 99 56.6
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 7.8e-21 104.0 101 56.4
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.0e-20 103.6 110 55.5
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.3e-20 102.4 118 50.8
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 3.0e-20 102.1 108 55.6
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 3.9e-20 101.7 108 51.9
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 3.9e-20 101.7 108 51.9
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 5.0e-20 101.3 98 56.1
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 5.0e-20 101.3 92 54.3
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 6.6e-20 100.9 108 55.6
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.1e-19 100.1 97 52.6
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.1e-19 100.1 90 56.7
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.5e-19 99.8 113 55.8
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.5e-19 99.8 99 58.6
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.5e-19 99.0 121 48.8
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 2.5e-19 99.0 114 54.4
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 3.3e-19 98.6 91 58.2
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 3.3e-19 98.6 121 48.8
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 3.3e-19 98.6 98 60.2
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 3.3e-19 98.6 98 57.1
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 5.6e-19 97.8 100 58.0
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 7.3e-19 97.4 106 54.7
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 9.5e-19 97.1 90 57.8
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 9.5e-19 97.1 118 49.2
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.5e-19 97.1 102 53.9
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 9.5e-19 97.1 97 52.6
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.2e-18 96.7 97 50.5
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.2e-18 96.7 107 53.3
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.2e-18 96.7 91 61.5
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 2.1e-18 95.9 97 54.6
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.1e-18 95.9 102 52.9
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.8e-18 95.5 100 60.0
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 3.6e-18 95.1 102 50.0
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.6e-18 95.1 93 55.9
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 4.7e-18 94.7 108 49.1
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.7e-18 94.7 102 52.9
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 4.7e-18 94.7 109 53.2
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 6.2e-18 94.4 114 53.5
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 8.0e-18 94.0 97 54.6
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.0e-18 94.0 98 51.0
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.0e-18 94.0 98 51.0
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 8.0e-18 94.0 121 47.9
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.1e-17 93.6 97 56.7
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.1e-17 93.6 110 51.8
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.4e-17 93.2 91 56.0
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.4e-17 93.2 89 58.4
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.4e-17 93.2 97 58.8
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 1.8e-17 92.8 97 51.5
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.8e-17 92.8 90 57.8
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 2.3e-17 92.4 108 54.6
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 3.1e-17 92.0 93 54.8
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 3.1e-17 92.0 100 54.0
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 5.2e-17 91.3 111 53.2
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 8.9e-17 90.5 98 59.2
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 8.9e-17 90.5 94 56.4
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.5e-16 89.7 96 53.1
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.5e-16 89.7 91 59.3
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 2.0e-16 89.4 99 52.5
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.0e-16 89.4 83 59.0
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.6e-16 89.0 98 49.0
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.6e-16 89.0 97 52.6
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.6e-16 89.0 95 56.8
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 3.4e-16 88.6 97 55.7
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.8e-16 87.8 100 54.0
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.3e-15 86.7 92 53.3
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.7e-15 86.3 105 52.4
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.7e-15 86.3 94 56.4
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.2e-15 85.9 100 48.0
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.7e-15 85.1 97 57.7
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.7e-15 85.1 95 56.8
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 4.9e-15 84.7 103 47.6
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 4.9e-15 84.7 96 51.0
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.3e-15 84.0 91 48.4
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.1e-14 83.6 90 51.1
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.4e-14 83.2 90 52.2
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.9e-14 82.8 97 53.6
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.9e-14 82.8 90 52.2
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.9e-14 82.8 91 47.3
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 2.4e-14 82.4 105 45.7
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 3.2e-14 82.0 93 53.8
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.2e-14 82.0 102 49.0
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.2e-14 82.0 128 49.2
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.2e-14 82.0 128 49.2
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 4.1e-14 81.6 84 54.8
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 4.1e-14 81.6 98 53.1
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.1e-14 81.6 94 47.9
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 5.4e-14 81.3 90 50.0
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 9.2e-14 80.5 90 51.1
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 9.2e-14 80.5 90 51.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 9.2e-14 80.5 93 51.6
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 1.6e-13 79.7 96 53.1
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.6e-13 79.7 90 52.2
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 2.0e-13 79.3 96 53.1
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.5e-13 78.6 90 51.1
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.5e-13 78.6 90 51.1
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 3.5e-13 78.6 84 51.2
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 4.6e-13 78.2 90 50.0
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 6.0e-13 77.8 90 50.0
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 7.8e-13 77.4 90 50.0
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 7.8e-13 77.4 89 50.6
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 7.8e-13 77.4 106 43.4
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.0e-12 77.0 86 52.3
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-12 76.6 98 51.0
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-12 76.6 90 47.8
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 1.7e-12 76.3 112 44.6
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 2.3e-12 75.9 97 51.5
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 2.3e-12 75.9 109 50.5
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 3.0e-12 75.5 90 46.7
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 5.0e-12 74.7 81 51.9
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.6e-12 74.3 91 56.0
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 8.6e-12 73.9 96 49.0
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.1e-11 73.6 96 52.1
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.9e-11 72.8 103 43.7
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.9e-11 72.8 103 43.7
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 2.5e-11 72.4 91 50.5
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 2.5e-11 72.4 91 50.5
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.5e-11 72.4 90 48.9
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.3e-11 72.0 96 51.0
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 3.3e-11 72.0 89 50.6
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.3e-11 72.0 84 47.6
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 4.3e-11 71.6 94 50.0
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.3e-11 71.6 82 53.7
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 5.6e-11 71.2 97 50.5
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 5.6e-11 71.2 92 48.9
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 7.3e-11 70.9 98 48.0
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.3e-11 70.9 82 53.7
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 9.5e-11 70.5 103 43.7
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 9.5e-11 70.5 109 42.2
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.2e-10 70.1 98 45.9
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-10 69.7 103 42.7
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.6e-10 69.7 103 42.7
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.6e-10 69.7 103 42.7
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.6e-10 69.7 93 46.2
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 1.6e-10 69.7 118 40.7
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.1e-10 69.3 95 45.3
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 4.7e-10 68.2 96 46.9
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 6.2e-10 67.8 111 43.2
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 8.1e-10 67.4 93 45.2
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.4e-09 66.6 95 43.2
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.3e-09 65.9 100 47.0
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.3e-09 65.9 116 43.1
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.3e-09 65.9 114 43.9
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.0e-09 65.1 104 41.3
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 6.8e-09 64.3 84 44.0
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 8.9e-09 63.9 97 44.3
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.2e-08 63.5 80 48.8
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 2.0e-08 62.8 99 41.4
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 2.6e-08 62.4 91 42.9
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 7.5e-08 60.8 99 38.4
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 9.9e-08 60.5 99 41.4
CiPaw.13G089400 Carya illinoinensis HOM05D008943 ORTHO05D010477 2.9e-07 58.9 86 40.7
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.9e-07 58.9 83 44.6
CiPaw.14G065200 Carya illinoinensis HOM05D008943 ORTHO05D010477 4.9e-07 58.2 93 43.0
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 1.1e-06 57.0 88 37.5
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.4e-06 56.6 40 70.0
QL01p029253 Quercus lobata HOM05D008943 ORTHO05D010477 1.9e-06 56.2 104 35.6
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 3.2e-06 55.5 91 42.9


User provided reference genes

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