Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.1e-88 327.0 183 100.0
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.7e-87 325.5 183 99.5
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.9e-86 322.0 183 98.4
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.9e-85 319.3 181 98.3
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.5e-85 318.9 183 97.3
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.2e-85 317.4 183 97.3
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-74 283.1 183 89.6
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.5e-74 280.8 197 84.8
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.5e-74 280.8 197 84.8
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.8e-74 280.4 201 83.1
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.8e-71 270.8 201 80.6
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 2.0e-42 176.4 207 59.9
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.6e-42 176.0 194 58.8
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.4e-42 175.3 194 59.8
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 4.3e-37 158.7 202 55.0
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.3e-36 157.1 202 53.5
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.9e-35 151.4 205 52.7
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.2e-33 146.4 212 49.5
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.2e-33 146.4 212 49.5
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 7.1e-32 141.4 205 51.2
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 6.0e-31 138.3 198 49.0
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 2.3e-30 136.3 198 53.5
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 9.6e-29 131.0 201 47.8
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 9.0e-27 124.4 202 47.0
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 3.4e-26 122.5 202 46.0
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 9.9e-26 120.9 202 46.0
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 9.9e-26 120.9 202 46.0
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.3e-25 120.6 208 47.6
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 2.2e-25 119.8 205 44.9
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 6.4e-25 118.2 205 43.9
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 5.5e-24 115.2 208 42.3
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.2e-23 114.0 198 44.9
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 6.0e-23 111.7 204 41.7
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.3e-22 110.5 204 42.2
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 3.0e-22 109.4 202 42.6
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 3.9e-22 109.0 204 40.7
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 3.9e-22 109.0 191 45.0
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 6.7e-22 108.2 203 42.4
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.5e-21 107.1 209 41.1
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 3.3e-21 105.9 195 44.1
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 7.4e-21 104.8 198 41.9
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 1.3e-20 104.0 199 42.7
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.6e-20 103.6 198 41.4
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 3.7e-20 102.4 210 43.8
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 8.2e-20 101.3 198 41.4
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.4e-19 99.8 206 42.2
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.4e-19 99.8 196 41.3
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 4.0e-19 99.0 199 39.7
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 9.0e-19 97.8 208 41.3
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 9.0e-19 97.8 199 41.7
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.2e-18 97.4 197 41.6
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.2e-18 97.4 208 41.3
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 1.2e-18 97.4 128 49.2
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.5e-18 97.1 210 40.0
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.5e-18 97.1 197 39.6
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 2.6e-18 96.3 195 42.1
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 2.2e-17 93.2 194 39.2
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 6.5e-17 91.7 188 39.4
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 8.4e-17 91.3 208 43.3
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.1e-16 90.9 196 40.8
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.1e-16 90.9 196 41.3
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.4e-16 90.5 210 42.4
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 2.5e-16 89.7 197 41.6
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 3.2e-16 89.4 201 38.8
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 4.2e-16 89.0 196 38.8
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 4.2e-16 89.0 211 39.8
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 7.1e-16 88.2 204 39.2
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 9.3e-16 87.8 203 40.4
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 9.3e-16 87.8 204 39.7
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 2.1e-15 86.7 200 38.0
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 2.7e-15 86.3 199 37.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 2.7e-15 86.3 199 37.2
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.7e-15 86.3 198 37.9
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 3.5e-15 85.9 209 40.2
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 4.6e-15 85.5 196 39.8
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 7.9e-15 84.7 195 40.0
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 7.9e-15 84.7 212 40.6
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.0e-14 84.3 196 37.8
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.0e-14 84.3 193 39.4
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 6.7e-14 81.6 214 35.5
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 6.7e-14 81.6 210 36.2
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 8.7e-14 81.3 194 39.7
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 8.7e-14 81.3 215 35.3
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 1.1e-13 80.9 166 39.2
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.9e-13 80.1 202 36.6
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 2.5e-13 79.7 213 38.5
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.5e-13 79.7 202 37.1
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.3e-13 79.3 196 38.8
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.3e-12 77.4 200 38.5
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.8e-12 76.3 206 35.4
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 6.3e-12 75.1 174 39.1
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 8.2e-12 74.7 132 43.2
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.4e-11 73.9 154 38.3
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.4e-11 73.9 217 34.6
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.4e-11 73.9 202 35.1
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 3.1e-11 72.8 192 37.5
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 5.3e-11 72.0 199 34.7
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 5.3e-11 72.0 194 34.0
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 5.3e-11 72.0 198 35.4
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.2e-10 70.9 207 36.2
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 3.4e-10 69.3 204 35.8
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 4.5e-10 68.9 202 35.6
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.7e-09 67.0 201 34.8
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.2e-09 66.6 155 36.1
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 3.8e-09 65.9 196 37.8
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 6.5e-09 65.1 192 35.9
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 6.5e-09 65.1 192 35.9
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 6.5e-09 65.1 198 38.9
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 6.5e-09 65.1 140 37.9
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 8.5e-09 64.7 196 37.2
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 8.5e-09 64.7 196 37.2
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 8.5e-09 64.7 194 38.1
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.1e-08 64.3 192 35.4
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.4e-08 63.9 197 34.0
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.9e-08 63.5 200 36.0
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.9e-08 63.5 203 36.5
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 2.5e-08 63.2 196 38.3
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.5e-08 63.2 193 33.7
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.5e-08 63.2 118 41.5
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 7.2e-08 61.6 203 34.0
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 7.2e-08 61.6 133 38.3
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 1.2e-07 60.8 197 38.1
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 1.2e-07 60.8 203 37.4
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.2e-07 60.8 213 33.8
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.1e-07 60.1 115 39.1
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 6.1e-07 58.5 197 37.1
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 6.1e-07 58.5 197 33.5
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 7.9e-07 58.2 205 31.7
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 7.9e-07 58.2 197 33.5
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.0e-06 57.8 200 34.5
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 5.1e-06 55.5 135 34.8
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 6.7e-06 55.1 197 30.5


User provided reference genes

Program Settings