Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017498 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D002559 6.2e-143 510.8 256 100.0
Actinidia01623 Actinidia chinensis HOM05D000101 ORTHO05D002559 2.2e-23 113.6 69 75.4
Actinidia00161 Actinidia chinensis HOM05D000101 ORTHO05D002559 5.5e-14 82.4 71 60.6
CSS0049217 Camellia sinensis var. sinensis HOM05D000137 ORTHO05D002559 1.4e-12 77.8 70 58.6
CSS0024333 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D002559 1.8e-12 77.4 70 57.1
Rhsim09G0175600 Rhododendron simsii HOM05D000022 ORTHO05D004590 3.0e-12 76.6 72 56.9
vmacro01694 Vaccinium macrocarpon HOM05D000009 ORTHO05D002559 4.3e-11 72.8 52 61.5
Actinidia38978 Actinidia chinensis HOM05D000512 ORTHO05D002559 7.4e-11 72.0 73 50.7
vmacro01695 Vaccinium macrocarpon HOM05D000046 ORTHO05D002559 1.7e-10 70.9 69 52.2
Rhsim09G0174900 Rhododendron simsii HOM05D000101 ORTHO05D002559 2.8e-10 70.1 72 52.8
vmacro01693 Vaccinium macrocarpon HOM05D000101 ORTHO05D002559 3.7e-10 69.7 72 52.8
Actinidia38983 Actinidia chinensis HOM05D000101 ORTHO05D002559 1.4e-09 67.8 72 48.6
Rhsim11G0119500 Rhododendron simsii HOM05D000046 ORTHO05D002559 1.4e-09 67.8 72 48.6
RhsimUnG0032300 Rhododendron simsii HOM05D000046 ORTHO05D002559 1.4e-09 67.8 72 48.6
vmacro01688 Vaccinium macrocarpon HOM05D000606 ORTHO05D002559 1.8e-09 67.4 72 50.0
RhsimUnG0031900 Rhododendron simsii HOM05D000117 ORTHO05D002559 2.4e-09 67.0 72 47.2
Gohir.D12G187350 Gossypium hirsutum HOM05D000306 ORTHO05D002559 3.1e-09 66.6 52 57.7
RhsimUnG0063400 Rhododendron simsii HOM05D001102 ORTHO05D002559 3.1e-09 66.6 63 55.6
Rhsim11G0119200 Rhododendron simsii HOM05D000101 ORTHO05D002559 4.1e-09 66.2 55 56.4
Eucgr.L00914 Eucalyptus grandis HOM05D000101 ORTHO05D002559 6.9e-09 65.5 69 40.6
Thecc.03G111600 Theobroma cacao HOM05D000101 ORTHO05D002559 9.1e-09 65.1 54 55.6
CSS0045387 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D002559 1.2e-08 64.7 72 48.6
Duzib084G0642 Durio zibethinus HOM05D000405 ORTHO05D002559 1.5e-08 64.3 52 55.8
Gohir.D10G201750 Gossypium hirsutum HOM05D000378 ORTHO05D002559 2.0e-08 63.9 73 45.2
Gorai.011G226500 Gossypium raimondii HOM05D000378 ORTHO05D002559 2.0e-08 63.9 73 45.2
Manes.10G113600 Manihot esculenta HOM05D000101 ORTHO05D002559 2.0e-08 63.9 68 45.6
Duzib084G0560 Durio zibethinus HOM05D000405 ORTHO05D002559 2.6e-08 63.5 52 55.8
Gohir.A12G184600 Gossypium hirsutum HOM05D000306 ORTHO05D025277 2.6e-08 63.5 67 46.3
Gohir.D10G201800 Gossypium hirsutum HOM05D001263 ORTHO05D002559 2.6e-08 63.5 73 45.2
Gohir.D12G187550 Gossypium hirsutum HOM05D000101 ORTHO05D002559 2.6e-08 63.5 52 55.8
Gorai.008G200800 Gossypium raimondii HOM05D000306 ORTHO05D002559 2.6e-08 63.5 52 55.8
Gorai.011G226600 Gossypium raimondii HOM05D001263 ORTHO05D002559 2.6e-08 63.5 73 45.2
Eucgr.G00088 Eucalyptus grandis HOM05D000101 ORTHO05D002559 3.4e-08 63.2 69 39.1
Gohir.A10G194800 Gossypium hirsutum HOM05D000101 ORTHO05D002559 4.5e-08 62.8 55 52.7
Rhsim05G0066300 Rhododendron simsii HOM05D000083 ORTHO05D001732 4.5e-08 62.8 71 47.9
DCAR_014285 Daucus carota HOM05D000083 ORTHO05D001732 5.9e-08 62.4 73 45.2
GSVIVG01023189001 Vitis vinifera HOM05D000101 ORTHO05D002559 5.9e-08 62.4 67 41.8
GSVIVG01023191001 Vitis vinifera HOM05D000101 ORTHO05D002559 5.9e-08 62.4 67 41.8
Cfa026046 Carpinus fangiana HOM05D000101 ORTHO05D002559 1.0e-07 61.6 66 45.5
Rhsim11G0120000 Rhododendron simsii HOM05D000046 ORTHO05D002559 1.0e-07 61.6 72 47.2
Thecc.03G111100 Theobroma cacao HOM05D000101 ORTHO05D002559 1.0e-07 61.6 52 53.8
Thecc.02G013200 Theobroma cacao HOM05D000101 ORTHO05D002559 1.3e-07 61.2 67 44.8
Thecc.02G013700 Theobroma cacao HOM05D000101 ORTHO05D002559 1.3e-07 61.2 67 47.8
CSS0025266 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D002559 2.2e-07 60.5 48 56.2
Duzib084G0766 Durio zibethinus HOM05D000101 ORTHO05D002559 2.2e-07 60.5 52 53.8
Duzib084G1141 Durio zibethinus HOM05D000101 ORTHO05D002559 2.2e-07 60.5 52 53.8
Eucgr.H05018 Eucalyptus grandis HOM05D000101 ORTHO05D002559 2.2e-07 60.5 69 37.7
Thecc.03G111400 Theobroma cacao HOM05D002542 ORTHO05D005078 2.2e-07 60.5 52 53.8
Rhsim10G0148700 Rhododendron simsii HOM05D000101 ORTHO05D002559 2.9e-07 60.1 72 43.1
Thecc.02G013400 Theobroma cacao HOM05D000101 ORTHO05D002559 2.9e-07 60.1 69 43.5
Eucgr.G00086 Eucalyptus grandis HOM05D000244 ORTHO05D002559 3.8e-07 59.7 68 39.7
DCAR_001709 Daucus carota HOM05D000101 ORTHO05D002559 5.0e-07 59.3 66 43.9
Dinv19435 Davidia involucrata HOM05D000101 ORTHO05D002559 5.0e-07 59.3 59 55.9
Duzib084G0127 Durio zibethinus HOM05D000101 ORTHO05D002559 5.0e-07 59.3 52 53.8
Eucgr.G00163 Eucalyptus grandis HOM05D000101 ORTHO05D002559 5.0e-07 59.3 66 39.4
Actinidia00159 Actinidia chinensis HOM05D000101 ORTHO05D002559 6.5e-07 58.9 45 66.7
Eucgr.L01864 Eucalyptus grandis HOM05D000101 ORTHO05D002559 6.5e-07 58.9 68 39.7
RhsimUnG0074700 Rhododendron simsii HOM05D000101 ORTHO05D002559 6.5e-07 58.9 74 39.2
Eucgr.G00106 Eucalyptus grandis HOM05D000101 ORTHO05D002559 8.5e-07 58.5 68 39.7
Thecc.10G124600 Theobroma cacao HOM05D000101 ORTHO05D002559 8.5e-07 58.5 60 46.7
Eucgr.H05031 Eucalyptus grandis HOM05D000046 ORTHO05D002559 1.1e-06 58.2 68 36.8
Duzib205G1753 Durio zibethinus HOM05D000196 ORTHO05D002559 1.9e-06 57.4 50 52.0
Thecc.02G013000 Theobroma cacao HOM05D000101 ORTHO05D002559 1.9e-06 57.4 67 41.8
GSVIVG01023173001 Vitis vinifera HOM05D000101 ORTHO05D002559 1.9e-06 57.4 69 39.1
vmacro22642 Vaccinium macrocarpon HOM05D000046 ORTHO05D002559 2.5e-06 57.0 63 50.8
Lj5C275T7 Lonicera japonica HOM05D000101 ORTHO05D002559 3.2e-06 56.6 57 45.6
QL02p102218 Quercus lobata HOM05D000101 ORTHO05D002559 3.2e-06 56.6 68 42.6
COL.COLO4_28821 Corchorus olitorius HOM05D000101 ORTHO05D002559 4.2e-06 56.2 52 51.9
Manes.10G111380 Manihot esculenta HOM05D000101 ORTHO05D002559 7.2e-06 55.5 68 42.6
Haze_00099 Corylus avellana HOM05D000101 ORTHO05D002559 9.4e-06 55.1 68 42.6


User provided reference genes

Program Settings