Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.1e-160 570.1 315 100.0
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 7.9e-148 527.3 315 94.6
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 3.6e-124 448.7 317 77.0
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 5.2e-115 418.3 343 71.7
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 8.8e-115 417.5 313 74.8
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 2.0e-114 416.4 316 70.6
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 2.0e-106 389.8 308 69.2
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 5.4e-104 381.7 217 86.2
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 1.3e-102 377.1 233 80.7
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 1.7e-102 376.7 300 73.7
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 5.0e-102 375.2 314 64.0
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 1.5e-101 373.6 314 64.3
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 1.5e-101 373.6 315 63.8
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 1.9e-101 373.2 316 65.5
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 3.3e-101 372.5 316 63.9
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 3.3e-101 372.5 318 62.9
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 1.2e-100 370.5 221 81.0
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 2.1e-100 369.8 310 66.5
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 4.7e-100 368.6 313 67.4
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 1.4e-99 367.1 315 65.4
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 4.0e-99 365.5 316 62.0
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 1.2e-98 364.0 214 82.7
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 2.6e-98 362.8 313 64.5
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 2.6e-98 362.8 316 66.5
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 4.4e-98 362.1 311 64.0
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 4.4e-98 362.1 317 63.4
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 5.8e-98 361.7 313 62.9
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.2e-97 359.8 315 63.2
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 2.2e-97 359.8 310 64.5
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 3.7e-97 359.0 318 63.2
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 4.9e-97 358.6 317 64.0
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 5.4e-96 355.1 314 65.3
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 7.0e-96 354.8 314 62.4
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 7.0e-96 354.8 314 62.4
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 1.2e-95 354.0 230 77.8
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.2e-95 354.0 313 66.1
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 3.5e-95 352.4 218 80.3
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.5e-95 352.4 218 80.3
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.5e-95 352.4 218 80.3
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 3.5e-95 352.4 314 63.1
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 3.5e-95 352.4 316 61.4
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 6.0e-95 351.7 252 70.6
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 1.0e-94 350.9 218 78.4
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.3e-94 350.5 218 79.8
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 3.0e-94 349.4 314 62.4
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 6.6e-94 348.2 323 59.4
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 6.6e-94 348.2 215 77.7
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 8.6e-94 347.8 238 72.7
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 1.5e-93 347.1 254 71.7
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 4.3e-93 345.5 224 75.4
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 4.3e-93 345.5 312 61.2
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 4.3e-93 345.5 217 76.5
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 5.6e-93 345.1 309 60.2
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 9.5e-93 344.4 316 59.8
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 1.6e-92 343.6 217 75.1
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 2.1e-92 343.2 212 77.8
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 2.1e-92 343.2 313 61.7
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 2.1e-92 343.2 218 74.8
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 3.6e-92 342.4 212 77.8
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 6.2e-92 341.7 200 82.5
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 1.1e-91 340.9 309 58.9
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.8e-91 340.1 216 75.0
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 1.8e-91 340.1 216 75.5
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 2.3e-91 339.7 313 58.8
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 5.2e-91 338.6 309 58.6
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 5.2e-91 338.6 315 60.6
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 8.9e-91 337.8 311 58.5
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 1.5e-90 337.0 309 59.5
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 1.5e-90 337.0 314 58.9
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 4.4e-90 335.5 217 75.1
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 5.8e-90 335.1 217 75.1
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 5.8e-90 335.1 217 75.1
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 7.5e-90 334.7 310 58.4
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 1.3e-89 334.0 214 75.7
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 2.2e-89 333.2 216 73.6
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 2.9e-89 332.8 313 59.7
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 2.9e-89 332.8 215 73.5
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 3.7e-89 332.4 314 58.3
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 3.7e-89 332.4 214 75.7
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 1.1e-88 330.9 232 69.4
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 1.4e-88 330.5 215 73.0
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 2.4e-88 329.7 323 57.0
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 2.4e-88 329.7 216 73.1
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.4e-88 329.7 218 77.1
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 3.2e-88 329.3 225 72.4
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 4.1e-88 328.9 217 72.8
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 7.1e-88 328.2 220 74.1
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 9.2e-88 327.8 217 73.3
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 9.2e-88 327.8 216 74.1
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 1.2e-87 327.4 226 70.8
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 1.6e-87 327.0 212 74.5
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 4.6e-87 325.5 288 62.8
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 6.0e-87 325.1 212 74.1
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 7.8e-87 324.7 211 74.4
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 7.8e-87 324.7 237 68.8
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 7.8e-87 324.7 210 74.8
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 1.3e-86 323.9 224 67.0
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 2.3e-86 323.2 313 58.1
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 3.0e-86 322.8 328 55.8
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 8.6e-86 321.2 246 65.4
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 1.5e-85 320.5 221 74.2
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 1.9e-85 320.1 230 69.6
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 1.2e-84 317.4 234 65.4
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 8.1e-84 314.7 303 56.8
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 2.6e-82 309.7 223 68.6
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 3.4e-82 309.3 237 62.9
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 5.8e-82 308.5 195 74.9
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 2.9e-81 306.2 294 58.2
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 2.4e-75 286.6 226 65.0
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 7.6e-74 281.6 283 57.6
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 1.1e-72 277.7 213 63.4
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 1.6e-68 263.8 225 54.2
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 3.6e-68 262.7 238 54.6
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 8.1e-68 261.5 168 75.0
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 3.1e-67 259.6 200 65.5
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 1.3e-65 254.2 238 60.9
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 6.0e-63 245.4 232 52.6
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 4.0e-59 232.6 190 64.2
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 4.5e-58 229.2 176 66.5
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 4.6e-47 192.6 186 53.2
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 2.8e-44 183.3 109 79.8
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 3.1e-43 179.9 144 61.8
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 1.1e-40 171.4 161 52.2
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 3.3e-37 159.8 265 43.4
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 6.9e-35 152.1 207 40.1
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 3.4e-34 149.8 83 81.9
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 4.5e-34 149.4 83 81.9
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 7.2e-32 142.1 128 58.6
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 5.1e-30 136.0 125 53.6
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 6.3e-28 129.0 68 85.3
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 1.4e-27 127.9 83 71.1
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 7.7e-26 122.1 199 33.7
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 1.7e-25 120.9 150 38.0
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 2.5e-16 90.5 53 77.4
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 4.7e-15 86.3 153 41.2
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 6.7e-14 82.4 56 71.4
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 3.7e-12 76.6 83 50.6
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.5e-08 64.7 73 53.4
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 1.9e-08 64.3 31 87.1
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 4.2e-08 63.2 46 67.4
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.6e-07 61.2 87 42.5
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 4.7e-07 59.7 28 89.3
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 8.8e-06 55.5 46 56.5


User provided reference genes

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