Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017493 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 8.9e-75 283.5 141 100.0
CSS0019093 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 1.1e-69 266.5 141 95.0
CSS0048723 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 6.4e-49 197.6 102 98.0
SalBow4G1964 Salvia bowleyana HOM05D007303 ORTHO05D009231 1.1e-11 73.9 39 82.1
SalBow4G2888 Salvia bowleyana HOM05D007303 ORTHO05D009231 1.1e-11 73.9 39 82.1
ClCG04G006170 Citrullus lanatus HOM05D007303 ORTHO05D009231 5.3e-11 71.6 36 88.9
AUR62006451 Chenopodium quinoa HOM05D007303 ORTHO05D009231 7.0e-11 71.2 36 91.7
Ca_23107_v3 Cicer arietinum L. HOM05D007303 ORTHO05D009231 7.0e-11 71.2 36 86.1
MELO3C025258.2 Cucumis melo HOM05D007303 ORTHO05D009231 7.0e-11 71.2 35 88.6
CsaV3_4G027390 Cucumis sativus L. HOM05D007303 ORTHO05D009231 7.0e-11 71.2 35 88.6
Hund19736 Selenicereus undatus HOM05D007303 ORTHO05D009231 7.0e-11 71.2 36 88.9
Oeu026929.1 Olea europaea HOM05D007303 ORTHO05D009231 9.1e-11 70.9 36 86.1
CANSAT83G0001 Cannabis sativa HOM05D007303 ORTHO05D009231 1.2e-10 70.5 36 86.1
PGR031G1377 Punica granatum HOM05D007303 ORTHO05D009231 1.2e-10 70.5 36 88.9
Glyma.09G271600 Glycine max HOM05D007303 ORTHO05D009231 1.6e-10 70.1 36 83.3
Glyma.18G217700 Glycine max HOM05D007303 ORTHO05D009231 2.0e-10 69.7 36 80.6
Medtr8g005360 Medicago truncatula HOM05D007303 ORTHO05D009231 2.0e-10 69.7 36 83.3
Nitab4.5_0001215g0100 Nicotiana tabacum HOM05D007303 ORTHO05D009231 2.0e-10 69.7 36 83.3
TWI74G1491 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 2.0e-10 69.7 36 86.1
Ah.15g089810 Amaranthus hybridus HOM05D007303 ORTHO05D009231 2.6e-10 69.3 36 88.9
MBI15_g31036_MAGBIO Magnolia biondii HOM05D007303 ORTHO05D009231 2.6e-10 69.3 56 57.1
MD04G1177900 Malus domestica HOM05D007303 ORTHO05D009231 2.6e-10 69.3 36 83.3
MD12G1193500 Malus domestica HOM05D007303 ORTHO05D009231 2.6e-10 69.3 36 83.3
Prupe.6G297800 Prunus persica HOM05D007303 ORTHO05D009231 2.6e-10 69.3 36 83.3
GSVIVG01010904001 Vitis vinifera HOM05D007303 ORTHO05D009231 2.6e-10 69.3 36 83.3
CAN.G65.102 Capsicum annuum HOM05D007303 ORTHO05D009231 3.5e-10 68.9 36 83.3
Hma1.2p1_0174F.1_g076630 Hydrangea macrophylla HOM05D007303 ORTHO05D009231 3.5e-10 68.9 36 86.1
THA.LOC104816152 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 3.5e-10 68.9 36 86.1
Zm00001eb290920 Zea mays HOM05D007303 ORTHO05D009231 3.5e-10 68.9 38 78.9
Manes.09G121600 Manihot esculenta HOM05D007303 ORTHO05D009231 4.5e-10 68.6 36 83.3
Oeu035181.1 Olea europaea HOM05D007303 ORTHO05D009231 4.5e-10 68.6 35 85.7
Sed0004919 Sechium edule HOM05D007303 ORTHO05D009231 4.5e-10 68.6 36 83.3
A03p36440 Brassica napus HOM05D007303 ORTHO05D009231 5.9e-10 68.2 37 81.1
Cpa.g.sc0.70 Carica papaya HOM05D007303 ORTHO05D009231 5.9e-10 68.2 36 83.3
Cfa017000 Carpinus fangiana HOM05D007303 ORTHO05D009231 5.9e-10 68.2 36 83.3
Haze_21228 Corylus avellana HOM05D007303 ORTHO05D009231 5.9e-10 68.2 36 83.3
Migut.L02050 Erythranthe guttata HOM05D007303 ORTHO05D009231 5.9e-10 68.2 36 83.3
FvH4_6g09420 Fragaria vesca HOM05D007303 ORTHO05D009231 5.9e-10 68.2 36 80.6
FAN05G5278 Fragaria x ananassa HOM05D007303 ORTHO05D009231 5.9e-10 68.2 36 80.6
FAN09G2915 Fragaria x ananassa HOM05D007303 ORTHO05D009231 5.9e-10 68.2 36 80.6
FAN14G3833 Fragaria x ananassa HOM05D007303 ORTHO05D009231 5.9e-10 68.2 36 80.6
RcHm_v2.0_Chr3g0459881 Rosa chinensis HOM05D007303 ORTHO05D009231 5.9e-10 68.2 36 80.6
Sopen10g027350 Solanum pennellii HOM05D007303 ORTHO05D009231 5.9e-10 68.2 36 80.6
PGSC0003DMG400027701 Solanum tuberosum HOM05D007303 ORTHO05D009231 5.9e-10 68.2 36 80.6
Phvul.008G079100 Phaseolus vulgaris HOM05D007303 ORTHO05D009231 7.7e-10 67.8 36 77.8
Psat6g005160 Pisum sativum HOM05D007303 ORTHO05D009231 7.7e-10 67.8 36 80.6
TAR633G2342 Trochodendron aralioides HOM05D007303 ORTHO05D009231 7.7e-10 67.8 32 90.6
BcaB04g18583 Brassica carinata HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
BcaB04g21249 Brassica carinata HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
BcaC01g04187 Brassica carinata HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
BcaC05g29598 Brassica carinata HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
BcaC09g47979 Brassica carinata HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
A05p40170 Brassica napus HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
C05p59250 Brassica napus HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
BolC1t05499H Brassica oleracea HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
BolC3t16676H Brassica oleracea HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
BolC5t34572H Brassica oleracea HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
BraA01t04340Z Brassica rapa HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
BraA03t12812Z Brassica rapa HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
Thhalv10021979m.g Eutrema salsugineum HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
Sp3g07060 Schrenkiella parvula HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
TWI53G0471 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 1.0e-09 67.4 36 83.3
COL.COLO4_05680 Corchorus olitorius HOM05D007303 ORTHO05D009231 1.3e-09 67.0 32 90.6
Duzib151G0876 Durio zibethinus HOM05D007303 ORTHO05D009231 1.3e-09 67.0 32 90.6
CiPaw.10G166700 Carya illinoinensis HOM05D007303 ORTHO05D009231 1.7e-09 66.6 36 83.3
Os05g0481600 Oryza sativa ssp. japonica HOM05D007303 ORTHO05D009231 1.7e-09 66.6 34 85.3
THA.LOC104820511 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 2.2e-09 66.2 36 80.6
Aa31LG5G11350 Aethionema arabicum HOM05D007303 ORTHO05D009231 2.9e-09 65.9 32 87.5
Manes.08G168000 Manihot esculenta HOM05D007303 ORTHO05D009231 2.9e-09 65.9 36 80.6
Sc20g0007240 Simmondsia chinensis HOM05D007303 ORTHO05D009231 2.9e-09 65.9 36 83.3
AL3G19590 Arabidopsis lyrata HOM05D007303 ORTHO05D009231 3.8e-09 65.5 36 80.6
AT3G08610 Arabidopsis thaliana HOM05D007303 ORTHO05D009231 3.8e-09 65.5 36 80.6
CARHR082910 Cardamine hirsuta HOM05D007303 ORTHO05D009231 3.8e-09 65.5 36 80.6
Gohir.A10G152200 Gossypium hirsutum HOM05D007303 ORTHO05D009231 3.8e-09 65.5 32 87.5
Gohir.A10G152700 Gossypium hirsutum HOM05D007303 ORTHO05D009231 3.8e-09 65.5 32 87.5
Gohir.D10G113500 Gossypium hirsutum HOM05D007303 ORTHO05D009231 3.8e-09 65.5 32 87.5
Gohir.D10G114000 Gossypium hirsutum HOM05D007303 ORTHO05D009231 3.8e-09 65.5 32 87.5
Gorai.011G125300 Gossypium raimondii HOM05D007303 ORTHO05D009231 3.8e-09 65.5 32 87.5
Gorai.011G125800 Gossypium raimondii HOM05D007303 ORTHO05D009231 3.8e-09 65.5 32 87.5
Aa31LG5G18650 Aethionema arabicum HOM05D007303 ORTHO05D009231 6.5e-09 64.7 32 87.5
Eucgr.K01299 Eucalyptus grandis HOM05D007303 ORTHO05D009231 8.5e-09 64.3 32 87.5
Thecc.04G147800 Theobroma cacao HOM05D007303 ORTHO05D009231 8.5e-09 64.3 32 90.6
Lj3g0023771 Lotus japonicus HOM05D007303 ORTHO05D009231 1.1e-08 63.9 36 80.6
Sabra04G0157400 Salix brachista HOM05D007303 ORTHO05D009231 1.5e-08 63.5 54 57.4
Carub.0003s0774 Capsella rubella HOM05D007303 ORTHO05D009231 2.5e-08 62.8 36 75.0
Oeu007820.2 Olea europaea HOM05D007303 ORTHO05D009231 2.5e-08 62.8 36 75.0
Cc06_g00200 Coffea canephora HOM05D007303 ORTHO05D009231 3.2e-08 62.4 36 77.8
DCAR_023961 Daucus carota HOM05D007303 ORTHO05D009231 5.5e-08 61.6 31 90.3
Lsat_1_v5_gn_8_109701 Lactuca sativa HOM05D007303 ORTHO05D009231 5.5e-08 61.6 33 81.8
arahy.Tifrunner.gnm1.ann1.RL3GXR Arachis hypogaea HOM05D007303 ORTHO05D009231 7.2e-08 61.2 36 75.0
arahy.Tifrunner.gnm1.ann1.ZQ7RI8 Arachis hypogaea HOM05D007303 ORTHO05D009231 7.2e-08 61.2 36 75.0
Potri.016G140900 Populus trichocarpa HOM05D007303 ORTHO05D009231 9.4e-08 60.8 36 75.0
Duzib212G0558 Durio zibethinus HOM05D007303 ORTHO05D009231 2.1e-07 59.7 32 84.4
PSO384G4262 Papaver somniferum HOM05D007303 ORTHO05D009231 2.1e-07 59.7 32 78.1
Oeu028466.1 Olea europaea HOM05D007303 ORTHO05D009231 1.0e-06 57.4 33 75.8
ECA236G3381 Erigeron canadensis HOM05D007303 ORTHO05D009231 1.8e-06 56.6 33 78.8
SEGI_21984 Sequoiadendron giganteum HOM05D007303 ORTHO05D009231 6.7e-06 54.7 36 69.4


User provided reference genes

Program Settings