Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 2.2e-160 568.9 298 100.0
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 4.7e-134 481.5 295 84.7
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 8.1e-134 480.7 291 85.2
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 4.9e-131 471.5 292 84.9
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.2e-130 468.8 295 84.1
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 5.4e-130 468.0 297 83.2
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.1e-127 460.3 291 82.8
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.9e-127 459.5 293 81.2
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 4.3e-127 458.4 294 80.3
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 1.1e-125 453.8 295 81.4
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 1.8e-125 453.0 299 79.9
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 4.0e-125 451.8 295 80.3
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 5.8e-124 448.0 295 80.0
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 1.7e-123 446.4 291 81.4
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.7e-123 446.4 299 80.3
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 6.4e-123 444.5 291 81.1
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 6.4e-123 444.5 291 81.1
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.4e-122 443.4 299 78.3
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 1.9e-122 443.0 296 78.4
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 4.1e-122 441.8 291 81.1
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 4.1e-122 441.8 299 77.9
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 5.4e-122 441.4 299 77.9
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 7.1e-122 441.0 291 79.7
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 6.0e-121 438.0 292 79.1
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 1.0e-120 437.2 294 78.6
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 3.9e-120 435.3 300 76.0
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 8.6e-120 434.1 295 76.6
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 4.3e-119 431.8 302 75.5
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 4.3e-119 431.8 292 78.8
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 5.6e-119 431.4 288 78.8
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 7.3e-119 431.0 297 77.8
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 1.6e-118 429.9 324 74.1
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 2.1e-118 429.5 293 76.5
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 2.1e-118 429.5 292 77.4
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 2.1e-118 429.5 291 77.7
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 2.8e-118 429.1 294 78.6
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.8e-118 429.1 293 76.5
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 2.8e-118 429.1 297 76.1
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.8e-118 429.1 295 76.9
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.6e-118 428.7 294 76.2
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 4.7e-118 428.3 291 78.4
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 8.1e-118 427.6 299 78.6
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 8.1e-118 427.6 298 77.9
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 8.1e-118 427.6 292 78.4
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 1.4e-117 426.8 289 76.5
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 2.4e-117 426.0 298 75.8
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.1e-117 425.6 294 76.2
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 4.0e-117 425.2 296 77.0
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 1.2e-116 423.7 295 78.0
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 1.5e-116 423.3 288 78.5
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.0e-116 422.9 294 76.2
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.0e-116 422.9 294 76.2
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 2.6e-116 422.5 284 79.6
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 3.4e-116 422.2 296 76.7
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.4e-116 422.2 293 75.8
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.4e-116 422.2 295 77.3
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 3.4e-116 422.2 295 75.9
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 5.8e-116 421.4 296 77.0
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 7.6e-116 421.0 288 79.5
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.3e-115 420.2 295 77.3
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 1.3e-115 420.2 287 76.0
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 2.9e-115 419.1 285 77.2
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 2.9e-115 419.1 298 73.2
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 4.9e-115 418.3 289 78.9
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 6.4e-115 417.9 291 74.9
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 6.4e-115 417.9 294 75.2
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.1e-114 417.2 303 74.9
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.4e-114 416.8 291 75.6
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.9e-114 416.4 288 77.1
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 2.4e-114 416.0 298 74.8
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 2.4e-114 416.0 327 70.3
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.2e-113 413.7 289 78.5
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 2.1e-113 412.9 353 66.0
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.7e-113 412.5 271 79.7
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.7e-113 412.5 271 79.7
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 7.8e-113 411.0 290 74.8
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 1.7e-112 409.8 295 74.9
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 2.3e-112 409.5 294 74.1
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 5.1e-112 408.3 293 74.4
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 8.7e-112 407.5 295 73.6
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.1e-111 407.1 299 71.9
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 2.5e-111 406.0 299 71.2
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 3.3e-111 405.6 295 71.5
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 4.3e-111 405.2 317 69.7
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 9.6e-111 404.1 284 76.8
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 9.6e-111 404.1 275 76.7
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 9.6e-111 404.1 262 79.4
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 9.6e-111 404.1 239 85.8
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 2.1e-110 402.9 301 73.8
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 3.6e-110 402.1 299 73.6
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 3.6e-110 402.1 286 74.1
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 6.2e-110 401.4 294 73.1
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 1.1e-109 400.6 344 66.0
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 3.1e-109 399.1 348 65.2
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 9.0e-109 397.5 295 71.5
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 2.9e-107 392.5 293 71.0
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 3.8e-107 392.1 286 74.8
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 3.2e-106 389.0 292 71.2
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 3.2e-106 389.0 295 71.9
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 5.4e-106 388.3 291 71.8
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 5.4e-106 388.3 291 71.8
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 4.6e-105 385.2 293 71.7
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 4.6e-105 385.2 292 71.2
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 7.9e-105 384.4 291 70.8
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 7.9e-105 384.4 291 70.8
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 3.0e-104 382.5 291 70.8
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 5.1e-104 381.7 356 61.0
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 6.6e-104 381.3 296 70.6
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 2.5e-103 379.4 295 66.8
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 2.5e-103 379.4 293 71.7
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 7.4e-103 377.9 293 70.6
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 4.8e-102 375.2 292 69.5
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.4e-101 373.6 298 68.1
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 1.5e-100 370.2 295 66.8
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 1.3e-99 367.1 303 67.7
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 8.4e-99 364.4 290 68.6
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.4e-98 363.6 291 68.4
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 5.5e-98 361.7 288 68.1
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 7.1e-98 361.3 294 68.7
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 2.7e-97 359.4 270 71.1
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 6.0e-97 358.2 331 61.9
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 1.3e-96 357.1 229 79.9
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 2.8e-94 349.4 229 77.7
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 6.2e-94 348.2 294 66.0
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 1.7e-91 340.1 228 76.3
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 2.2e-91 339.7 229 78.2
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 2.2e-91 339.7 270 67.0
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.8e-88 330.1 199 84.4
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.8e-88 330.1 294 63.3
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 3.0e-88 329.3 229 76.0
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 9.0e-85 317.8 249 68.7
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 5.0e-83 312.0 230 67.4
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.6e-81 307.0 219 73.5
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 8.7e-80 301.2 265 63.8
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 1.1e-79 300.8 295 57.3
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.1e-79 300.8 220 68.6
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 2.5e-79 299.7 201 73.1
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 7.4e-79 298.1 210 70.0
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.6e-78 297.0 185 82.7
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 6.3e-78 295.0 232 69.0
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 2.4e-77 293.1 184 80.4
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 1.8e-69 266.9 197 71.6
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 6.7e-56 221.9 226 51.3
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 6.7e-56 221.9 214 52.8
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 2.6e-55 219.9 180 62.8
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.4e-48 197.6 150 67.3
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 1.4e-48 197.6 239 47.3
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 3.6e-41 172.9 161 61.5
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 4.0e-40 169.5 216 43.5
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 4.6e-28 129.4 285 37.9
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 1.8e-24 117.5 70 87.1
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 7.0e-21 105.5 59 89.8
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 9.2e-21 105.1 63 87.3
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 2.3e-16 90.5 117 47.9
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 4.6e-12 76.3 48 75.0
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 3.3e-10 70.1 52 69.2


User provided reference genes

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