Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017448 Camellia sinensis var. sinensis HOM05D009561 ORTHO05D003092 1.8e-254 882.1 444 100.0
CSS0015137 Camellia sinensis var. sinensis HOM05D009561 ORTHO05D003092 7.6e-229 797.0 445 91.9
Dinv41472 Davidia involucrata HOM05D003107 ORTHO05D003092 1.1e-118 431.0 499 53.1
vmacro07728 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 2.9e-111 406.4 462 54.3
Rhsim01G0061100 Rhododendron simsii HOM05D003107 ORTHO05D003092 9.6e-107 391.3 457 53.8
Actinidia07321 Actinidia chinensis HOM05D003107 ORTHO05D003092 2.3e-92 343.6 472 48.7
QL02p089967 Quercus lobata HOM05D003107 ORTHO05D003092 2.8e-82 310.1 497 43.5
Duzib187G1951 Durio zibethinus HOM05D003107 ORTHO05D003092 2.2e-71 273.9 483 40.6
Thecc.09G133300 Theobroma cacao HOM05D003107 ORTHO05D003092 2.2e-71 273.9 489 41.7
GSVIVG01015600001 Vitis vinifera HOM05D009561 ORTHO05D003092 3.8e-71 273.1 511 39.3
TAR636G3294 Trochodendron aralioides HOM05D003107 ORTHO05D003092 1.1e-70 271.6 562 36.8
CiPaw.03G248900 Carya illinoinensis HOM05D003107 ORTHO05D003092 4.3e-67 259.6 495 40.2
Potri.018G125500 Populus trichocarpa HOM05D003107 ORTHO05D003092 4.1e-65 253.1 510 40.4
Potri.T125307 Populus trichocarpa HOM05D003107 ORTHO05D003092 2.0e-64 250.8 510 40.2
Gorai.010G061400 Gossypium raimondii HOM05D003107 ORTHO05D003092 6.5e-63 245.7 487 39.0
Haze_25496 Corylus avellana HOM05D009561 ORTHO05D003092 1.9e-62 244.2 504 38.1
Gohir.A06G053600 Gossypium hirsutum HOM05D003107 ORTHO05D003092 5.5e-62 242.7 427 40.0
Nn8g39562 Nelumbo nucifera HOM05D003107 ORTHO05D003092 2.1e-61 240.7 510 38.0
Gohir.D06G052900 Gossypium hirsutum HOM05D003107 ORTHO05D003092 8.8e-60 235.3 378 43.4
Sabra18G0106800 Salix brachista HOM05D003107 ORTHO05D003092 8.8e-60 235.3 496 38.7
Peaxi162Scf00088g01215 Petunia axillaris HOM05D009561 ORTHO05D003092 4.8e-58 229.6 477 37.9
Nitab4.5_0000374g0120 Nicotiana tabacum HOM05D009561 ORTHO05D003092 1.4e-57 228.0 479 39.7
Manes.06G046500 Manihot esculenta HOM05D003107 ORTHO05D003092 3.1e-57 226.9 507 36.9
Hma1.2p1_0497F.1_g166410 Hydrangea macrophylla HOM05D003107 ORTHO05D003092 3.5e-56 223.4 336 43.5
CAN.G763.8 Capsicum annuum HOM05D009561 ORTHO05D003092 1.7e-55 221.1 487 39.4
Cfa002924 Carpinus fangiana HOM05D003107 ORTHO05D003092 3.2e-54 216.9 460 38.5
Nitab4.5_0003393g0030 Nicotiana tabacum HOM05D009561 ORTHO05D003092 4.8e-50 203.0 392 40.1
Cpa.g.sc46.47 Carica papaya HOM05D003107 ORTHO05D003092 2.5e-46 190.7 280 45.0
Aqoxy7G03629 Aquilegia oxysepala HOM05D003107 ORTHO05D003092 9.4e-46 188.7 427 36.5
Lalb_Chr08g0234601 Lupinus albus HOM05D003107 ORTHO05D003092 1.4e-44 184.9 469 34.8
Ciclev10007677m.g Citrus clementina HOM05D003107 ORTHO05D003092 7.0e-41 172.6 385 37.7
Sc18g0000310 Simmondsia chinensis HOM05D003107 ORTHO05D003092 5.9e-40 169.5 407 36.4
ATR0800G121 Amborella trichopoda HOM05D003107 ORTHO05D003092 1.3e-39 168.3 474 30.6
ECA234G1222 Erigeron canadensis HOM05D003107 ORTHO05D003092 1.6e-37 161.4 466 34.1
Solyc07g007840.3 Solanum lycopersicum HOM05D009561 ORTHO05D003092 2.0e-35 154.5 494 33.4
AUR62011180 Chenopodium quinoa HOM05D003107 ORTHO05D003092 4.4e-35 153.3 470 31.3
CDE04G1135 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 2.8e-34 150.6 459 31.6
Ah.09g224690 Amaranthus hybridus HOM05D009561 ORTHO05D003092 4.9e-34 149.8 344 32.0
Oeu052756.1 Olea europaea HOM05D009561 ORTHO05D003092 4.9e-34 149.8 468 32.1
Lsat_1_v5_gn_5_93901 Lactuca sativa HOM05D003107 ORTHO05D003092 1.6e-32 144.8 112 64.3
Sopen07g003740 Solanum pennellii HOM05D009561 ORTHO05D003092 1.6e-32 144.8 476 33.8
HanXRQChr12g0356791 Helianthus annuus HOM05D003107 ORTHO05D003092 2.0e-32 144.4 238 42.9
HPP92_010519 Vanilla planifolia HOM05D003107 ORTHO05D003092 1.9e-30 137.9 184 44.0
AUR62013303 Chenopodium quinoa HOM05D003107 ORTHO05D003092 9.5e-30 135.6 235 40.9
Actinidia21947 Actinidia chinensis HOM05D009561 ORTHO05D003092 3.6e-29 133.7 248 41.5
Os04g0644675 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 8.3e-26 122.5 105 54.3
Lj6g0021163 Lotus japonicus HOM05D003107 ORTHO05D003092 3.2e-25 120.6 105 58.1
TPR.G9542 Trifolium pratense HOM05D003107 ORTHO05D003092 2.5e-22 110.9 100 52.0
Psat1g127320 Pisum sativum HOM05D009561 ORTHO05D003092 1.6e-21 108.2 123 48.0
ATR0772G192 Amborella trichopoda HOM05D009561 ORTHO05D003092 2.8e-21 107.5 228 33.3
QL02p090018 Quercus lobata HOM05D009561 ORTHO05D003092 6.4e-18 96.3 78 65.4
Medtr6g033205 Medicago truncatula HOM05D009561 ORTHO05D003092 1.4e-17 95.1 110 47.3
SHI33553 Sapria himalayana HOM05D014003 ORTHO05D016381 2.0e-16 91.3 407 25.6
Psat1g024000 Pisum sativum HOM05D003107 ORTHO05D003092 3.0e-15 87.4 129 38.8
SEGI_27893 Sequoiadendron giganteum HOM05D003107 ORTHO05D003092 1.2e-13 82.0 104 38.5
Thecc.09G326100 Theobroma cacao HOM05D009561 ORTHO05D016381 1.6e-13 81.6 171 36.8
CDE06G0534 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 2.8e-13 80.9 350 27.1
Psat1g023960 Pisum sativum HOM05D003107 ORTHO05D003092 2.8e-13 80.9 131 35.9
SHI25697 Sapria himalayana HOM05D009561 ORTHO05D003092 6.8e-12 76.3 50 66.0
TAR624G0993 Trochodendron aralioides HOM05D003107 ORTHO05D003092 2.0e-11 74.7 87 39.1
SHI41186 Sapria himalayana HOM05D009561 ORTHO05D003092 4.4e-11 73.6 60 61.7
Aqoxy1G02257 Aquilegia oxysepala HOM05D003107 ORTHO05D003092 8.3e-10 69.3 142 32.4
ATR0037G033 Amborella trichopoda HOM05D003107 ORTHO05D003092 2.4e-09 67.8 102 30.4
SHI34339 Sapria himalayana HOM05D014003 ORTHO05D016381 2.4e-09 67.8 317 25.9
SHI41184 Sapria himalayana HOM05D009561 ORTHO05D003092 3.2e-09 67.4 57 61.4
GSVIVG01035723001 Vitis vinifera HOM05D003107 ORTHO05D003092 7.1e-09 66.2 245 25.3
Zm00001eb240410 Zea mays HOM05D003107 ORTHO05D003092 7.1e-09 66.2 100 36.0
Actinidia13287 Actinidia chinensis HOM05D003107 ORTHO05D003092 9.2e-09 65.9 97 33.0
Os02g0208600 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 9.2e-09 65.9 115 31.3
Zm00001eb205470 Zea mays HOM05D003107 ORTHO05D003092 3.5e-08 63.9 82 37.8
PGR031G3499 Punica granatum HOM05D003107 ORTHO05D003092 1.7e-07 61.6 137 30.7
AagrBONN_evm.TU.Sc2ySwM_344.4237 Anthoceros agrestis HOM05D003107 ORTHO05D003092 2.3e-07 61.2 132 29.5
HPP92_014684 Vanilla planifolia HOM05D003107 ORTHO05D003092 2.3e-07 61.2 98 32.7
TAR383G1012 Trochodendron aralioides HOM05D003107 ORTHO05D003092 3.0e-07 60.8 131 30.5
PSO170G1884 Papaver somniferum HOM05D003107 ORTHO05D003092 3.9e-07 60.5 128 28.9
RcHm_v2.0_Chr6g0312791 Rosa chinensis HOM05D003107 ORTHO05D003092 3.9e-07 60.5 97 34.0
Eucgr.C01815 Eucalyptus grandis HOM05D003107 ORTHO05D003092 5.1e-07 60.1 87 36.8
SalBow8G1653 Salvia bowleyana HOM05D003107 ORTHO05D003092 5.1e-07 60.1 357 23.8
SalBow8G2039 Salvia bowleyana HOM05D003107 ORTHO05D003092 8.6e-07 59.3 369 24.1
SGA_v2.0_scaffold27G11488 Striga asiatica HOM05D003107 ORTHO05D003092 8.6e-07 59.3 116 31.0
vmacro05445 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 8.6e-07 59.3 112 34.8
CANSAT25G0565 Cannabis sativa HOM05D003107 ORTHO05D003092 1.1e-06 58.9 87 34.5
Lj7A713T53 Lonicera japonica HOM05D003107 ORTHO05D003092 1.5e-06 58.5 93 37.6
Os06g0595900 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 1.5e-06 58.5 100 34.0
Rhsim02G0187500 Rhododendron simsii HOM05D003107 ORTHO05D003092 1.5e-06 58.5 138 28.3
CSS0009859 Camellia sinensis var. sinensis HOM05D003107 ORTHO05D003092 1.9e-06 58.2 90 36.7
Sabra06G0193100 Salix brachista HOM05D003107 ORTHO05D003092 1.9e-06 58.2 338 24.3
Atru.chr7.2327 Acer truncatum HOM05D003107 ORTHO05D003092 2.5e-06 57.8 136 25.7
BcaB06g28082 Brassica carinata HOM05D003107 ORTHO05D003092 3.3e-06 57.4 125 32.0
Cfa013207 Carpinus fangiana HOM05D003107 ORTHO05D003092 3.3e-06 57.4 96 33.3
Haze_21621 Corylus avellana HOM05D003107 ORTHO05D003092 3.3e-06 57.4 96 33.3
arahy.Tifrunner.gnm1.ann1.YCI793 Arachis hypogaea HOM05D003107 ORTHO05D003092 5.6e-06 56.6 94 30.9
Lj1g0004393 Lotus japonicus HOM05D003107 ORTHO05D003092 5.6e-06 56.6 127 34.6
MD15G1115600 Malus domestica HOM05D003107 ORTHO05D003092 5.6e-06 56.6 82 31.7
AT2G25640 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 9.5e-06 55.8 93 34.4


User provided reference genes

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