Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 3.9e-110 401.4 189 100.0
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 2.3e-94 349.0 189 84.7
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.7e-92 342.8 189 81.5
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.5e-88 329.7 181 81.2
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 6.1e-87 324.3 189 77.8
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 8.8e-86 320.5 184 78.3
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 1.7e-84 316.2 180 78.3
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 4.1e-83 311.6 186 77.4
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 5.4e-83 311.2 184 76.6
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 1.2e-82 310.1 177 79.1
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 1.6e-82 309.7 181 76.8
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 3.5e-82 308.5 206 70.9
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 5.9e-82 307.8 181 75.1
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 7.7e-82 307.4 185 76.8
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 1.0e-81 307.0 184 72.8
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 1.3e-81 306.6 187 73.8
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 1.3e-81 306.6 183 78.1
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 1.3e-81 306.6 184 77.2
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 2.9e-81 305.4 188 76.6
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 2.9e-81 305.4 187 74.9
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 3.8e-81 305.1 188 74.5
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 3.8e-81 305.1 190 74.2
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 1.1e-80 303.5 184 75.0
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 7.2e-80 300.8 187 72.2
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 7.2e-80 300.8 180 74.4
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 9.5e-80 300.4 192 73.4
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 1.6e-79 299.7 182 75.3
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 2.1e-79 299.3 186 73.7
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 2.1e-79 299.3 161 80.7
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 3.6e-79 298.5 170 75.9
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 4.7e-79 298.1 177 77.4
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 1.4e-78 296.6 164 79.3
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 1.4e-78 296.6 173 76.9
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 1.8e-78 296.2 190 73.2
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 1.8e-78 296.2 184 72.8
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 2.3e-78 295.8 162 81.5
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 4.0e-78 295.0 183 71.0
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 6.8e-78 294.3 183 74.3
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 6.8e-78 294.3 192 72.4
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 8.9e-78 293.9 187 70.1
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 1.5e-77 293.1 187 72.2
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 2.0e-77 292.7 184 73.4
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 3.4e-77 292.0 184 72.3
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 3.4e-77 292.0 184 72.3
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 4.4e-77 291.6 184 70.7
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 5.7e-77 291.2 170 77.6
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 9.8e-77 290.4 194 70.1
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 1.7e-76 289.7 191 72.3
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 2.2e-76 289.3 187 69.5
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 2.8e-76 288.9 185 73.5
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 2.8e-76 288.9 189 69.3
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 6.3e-76 287.7 191 69.1
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 8.3e-76 287.3 186 71.0
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.1e-75 287.0 184 70.7
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 1.1e-75 287.0 161 78.9
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 1.1e-75 287.0 190 71.6
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 2.4e-75 285.8 163 77.9
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 4.1e-75 285.0 191 69.6
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 4.1e-75 285.0 187 73.8
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 4.1e-75 285.0 191 71.7
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 5.4e-75 284.6 172 74.4
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 5.4e-75 284.6 185 70.8
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 7.0e-75 284.3 184 73.9
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 7.0e-75 284.3 161 79.5
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 7.0e-75 284.3 189 69.3
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 3.5e-74 282.0 183 68.9
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 5.9e-74 281.2 184 72.8
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 1.0e-73 280.4 187 70.1
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 1.3e-73 280.0 183 71.6
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 1.3e-73 280.0 183 71.6
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 2.3e-73 279.3 185 70.3
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 3.8e-73 278.5 186 71.5
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 5.0e-73 278.1 185 69.7
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 8.6e-73 277.3 183 72.1
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.5e-72 276.6 194 67.0
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 2.5e-72 275.8 179 70.4
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 2.5e-72 275.8 180 70.6
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 4.3e-72 275.0 166 72.9
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 7.3e-72 274.2 180 70.6
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 9.5e-72 273.9 192 64.6
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 9.5e-72 273.9 186 67.7
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 2.1e-71 272.7 185 67.6
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 2.8e-71 272.3 179 69.3
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 2.8e-71 272.3 179 69.3
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 2.8e-71 272.3 185 68.1
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 4.7e-71 271.6 188 65.4
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 8.0e-71 270.8 179 69.3
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 4.0e-70 268.5 166 71.1
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 5.2e-70 268.1 162 73.5
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 8.9e-70 267.3 194 64.9
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 5.4e-67 258.1 184 68.5
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 7.0e-67 257.7 140 82.9
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 1.7e-65 253.1 230 55.2
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 2.3e-65 252.7 159 72.3
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 5.0e-65 251.5 183 63.4
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 1.5e-64 250.0 159 70.4
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 3.3e-64 248.8 159 69.2
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 4.3e-64 248.4 163 68.1
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 2.1e-63 246.1 144 75.7
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 2.3e-62 242.7 165 67.9
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 4.0e-62 241.9 267 50.6
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 4.0e-62 241.9 188 61.7
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 1.2e-61 240.4 154 73.4
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 1.5e-61 240.0 143 76.2
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 2.9e-60 235.7 150 72.7
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 2.9e-60 235.7 155 72.9
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 2.4e-59 232.6 150 72.0
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 9.2e-59 230.7 240 49.6
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 2.7e-58 229.2 193 54.9
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 3.5e-58 228.8 150 70.0
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 1.2e-50 203.8 153 62.1
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 3.5e-50 202.2 135 73.3
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 8.6e-49 197.6 129 69.8
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 8.6e-49 197.6 169 56.2
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 2.5e-48 196.1 170 52.9
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 4.3e-48 195.3 167 53.3
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 6.2e-47 191.4 125 71.2
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 3.8e-44 182.2 189 56.6
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 6.4e-44 181.4 105 75.2
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 1.4e-43 180.3 104 76.0
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 3.2e-43 179.1 130 60.8
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 1.0e-41 174.1 113 68.1
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 5.6e-40 168.3 112 75.9
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 5.6e-40 168.3 224 40.6
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 1.2e-39 167.2 128 60.2
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 1.6e-39 166.8 97 76.3
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 4.9e-36 155.2 152 52.0
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 8.4e-36 154.5 91 73.6
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 4.2e-35 152.1 102 66.7
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 4.6e-34 148.7 120 55.0
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 1.0e-33 147.5 90 70.0
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 6.2e-31 138.3 84 71.4
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 7.9e-26 121.3 81 66.7
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 1.9e-24 116.7 121 52.1
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 1.8e-22 110.2 185 38.4
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.0e-13 80.1 45 80.0


User provided reference genes

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