Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.4e-62 241.1 121 100.0
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 9.5e-41 170.2 120 70.8
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 5.0e-34 147.9 120 65.8
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 5.0e-34 147.9 120 65.8
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.5e-33 146.4 116 65.5
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 3.0e-31 138.7 119 58.8
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 6.8e-31 137.5 114 60.5
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 8.9e-31 137.1 115 60.9
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 3.4e-30 135.2 115 60.0
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 5.7e-30 134.4 119 55.5
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 7.5e-30 134.0 110 60.9
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 7.5e-30 134.0 119 55.5
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.3e-29 133.3 123 56.9
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.7e-29 132.9 121 58.7
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 2.2e-29 132.5 121 57.9
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 2.9e-29 132.1 123 60.2
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 6.4e-29 131.0 119 52.9
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 2.4e-28 129.0 122 54.9
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 9.2e-28 127.1 122 54.1
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 1.6e-27 126.3 114 54.4
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.6e-27 126.3 119 54.6
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.3e-26 123.2 114 55.3
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 3.0e-26 122.1 121 56.2
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.9e-26 121.7 121 55.4
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 5.0e-26 121.3 121 49.6
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 5.0e-26 121.3 121 49.6
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 6.6e-26 120.9 121 51.2
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 1.1e-25 120.2 122 50.8
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.1e-25 120.2 121 48.8
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 3.3e-25 118.6 119 52.9
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 7.3e-25 117.5 122 52.5
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 9.5e-25 117.1 121 49.6
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 1.2e-24 116.7 116 54.3
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.8e-24 115.5 114 49.1
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 3.6e-24 115.2 117 54.7
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.0e-23 113.6 121 56.2
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.0e-23 113.6 123 51.2
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.0e-23 113.6 118 48.3
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 1.8e-23 112.8 118 50.0
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 2.3e-23 112.5 122 49.2
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 5.2e-23 111.3 114 55.3
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 5.2e-23 111.3 121 52.1
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 8.9e-23 110.5 122 47.5
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 8.9e-23 110.5 121 49.6
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 8.9e-23 110.5 99 58.6
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 2.0e-22 109.4 129 48.1
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 4.4e-22 108.2 130 45.4
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.4e-22 108.2 112 50.0
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 7.5e-22 107.5 123 48.0
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.3e-21 106.7 122 46.7
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.7e-21 106.3 121 52.9
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 2.2e-21 105.9 121 45.5
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 2.2e-21 105.9 121 49.6
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.7e-21 105.1 122 45.9
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 4.9e-21 104.8 120 47.5
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 1.9e-20 102.8 122 51.6
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 5.4e-20 101.3 110 51.8
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 9.2e-20 100.5 122 47.5
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.2e-19 100.1 121 47.1
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 1.6e-19 99.8 123 44.7
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 2.0e-19 99.4 119 46.2
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 2.0e-19 99.4 120 41.7
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 4.6e-19 98.2 122 46.7
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 4.6e-19 98.2 129 44.2
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 6.0e-19 97.8 122 46.7
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 7.8e-19 97.4 121 47.1
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.3e-18 96.7 125 43.2
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 1.7e-18 96.3 115 47.8
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 3.0e-18 95.5 117 51.3
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 3.9e-18 95.1 102 49.0
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 5.0e-18 94.7 114 45.6
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 6.6e-18 94.4 115 49.6
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 6.6e-18 94.4 121 43.0
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.5e-17 93.2 121 47.9
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.9e-17 92.8 119 49.6
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.5e-17 92.4 118 43.2
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 2.5e-17 92.4 116 46.6
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.5e-17 92.4 125 40.0
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.3e-17 92.0 119 49.6
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 5.6e-17 91.3 114 47.4
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.2e-16 90.1 118 42.4
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 1.2e-16 90.1 116 45.7
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 1.6e-16 89.7 120 45.0
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.1e-16 89.4 118 42.4
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 2.8e-16 89.0 116 44.0
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.6e-16 88.6 113 48.7
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.7e-16 88.2 121 43.8
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 4.7e-16 88.2 124 41.9
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 8.1e-16 87.4 117 46.2
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 8.1e-16 87.4 116 45.7
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 8.1e-16 87.4 116 45.7
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.1e-15 87.0 121 45.5
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.1e-15 87.0 121 45.5
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 1.1e-15 87.0 120 47.5
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.8e-15 86.3 116 40.5
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.3e-15 85.9 118 42.4
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 2.3e-15 85.9 119 42.0
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.1e-15 85.5 117 41.0
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 5.2e-15 84.7 109 45.9
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 6.8e-15 84.3 118 41.5
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 6.8e-15 84.3 122 45.1
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.5e-14 83.2 117 47.0
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.6e-14 82.4 121 43.8
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 3.4e-14 82.0 114 43.0
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 9.8e-14 80.5 134 40.3
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 9.8e-14 80.5 114 41.2
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.3e-13 80.1 113 46.0
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 1.7e-13 79.7 83 53.0
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.7e-13 79.7 116 43.1
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 1.7e-13 79.7 114 43.0
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 2.9e-13 79.0 113 39.8
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 3.7e-13 78.6 122 39.3
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.7e-13 78.6 116 44.8
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 4.9e-13 78.2 117 41.0
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 4.9e-13 78.2 135 37.0
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 6.4e-13 77.8 125 42.4
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 1.1e-12 77.0 114 43.0
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.4e-12 76.6 116 43.1
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.4e-12 76.6 116 43.1
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 1.4e-12 76.6 114 40.4
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 2.4e-12 75.9 134 39.6
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 2.4e-12 75.9 116 41.4
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 4.1e-12 75.1 128 40.6
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 4.1e-12 75.1 115 39.1
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 2.1e-11 72.8 121 38.8
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 2.7e-11 72.4 119 37.0
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 4.6e-11 71.6 113 37.2
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 6.0e-11 71.2 113 38.1
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 7.8e-11 70.9 100 38.0
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 1.7e-10 69.7 135 34.8
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 5.1e-10 68.2 78 50.0
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 5.1e-10 68.2 121 37.2
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 6.6e-10 67.8 119 38.7
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 6.6e-10 67.8 128 36.7
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 8.6e-10 67.4 123 37.4
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 1.5e-09 66.6 121 33.9
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 1.9e-09 66.2 112 36.6
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.9e-09 66.2 121 36.4
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 5.6e-09 64.7 128 36.7
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 5.6e-09 64.7 128 36.7
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 5.6e-09 64.7 128 36.7
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 7.3e-09 64.3 118 33.9
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 1.6e-08 63.2 128 37.5
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 2.8e-08 62.4 124 37.1
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 8.1e-08 60.8 105 40.0
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 2.0e-06 56.2 95 37.9


User provided reference genes

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