Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017413 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 1.0e-103 380.2 203 100.0
CSS0029289 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 1.7e-58 229.9 139 87.8
Rhsim06G0148700 Rhododendron simsii HOM05D006722 ORTHO05D007944 1.5e-27 127.1 135 55.6
CSS0036536 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 1.0e-26 124.4 143 55.9
Lj8C115G8 Lonicera japonica HOM05D000389 ORTHO05D000287 6.1e-24 115.2 127 55.1
Rhsim06G0148800 Rhododendron simsii HOM05D006722 ORTHO05D007944 2.5e-22 109.8 142 47.9
Oeu029925.1 Olea europaea HOM05D006722 ORTHO05D007944 8.2e-21 104.8 139 46.8
Oeu029927.1 Olea europaea HOM05D006722 ORTHO05D007944 2.4e-20 103.2 97 56.7
Actinidia09877 Actinidia chinensis HOM05D006722 ORTHO05D007944 1.5e-19 100.5 148 45.3
Hma1.2p1_0875F.1_g231440 Hydrangea macrophylla HOM05D006722 ORTHO05D007944 1.5e-19 100.5 133 48.9
Rhsim04G0066600 Rhododendron simsii HOM05D006722 ORTHO05D007944 3.4e-19 99.4 128 50.0
Lsat_1_v5_gn_3_39421 Lactuca sativa HOM05D006722 ORTHO05D007944 7.7e-19 98.2 87 59.8
Peaxi162Scf00132g00074 Petunia axillaris HOM05D006722 ORTHO05D007944 7.7e-19 98.2 140 45.0
CANSAT64G0061 Cannabis sativa HOM05D006722 ORTHO05D007944 5.0e-18 95.5 134 45.5
HanXRQChr17g0559971 Helianthus annuus HOM05D006722 ORTHO05D007944 2.5e-17 93.2 133 41.4
Solyc07g054310.3 Solanum lycopersicum HOM05D006722 ORTHO05D007944 9.4e-17 91.3 133 39.8
Duzib132G0356 Durio zibethinus HOM05D006722 ORTHO05D007944 1.2e-16 90.9 171 40.9
Migut.H01052 Erythranthe guttata HOM05D006722 ORTHO05D007944 1.6e-16 90.5 136 47.1
Sopen07g028260 Solanum pennellii HOM05D006722 ORTHO05D007944 1.6e-16 90.5 92 51.1
Migut.H01053 Erythranthe guttata HOM05D006722 ORTHO05D007944 2.7e-16 89.7 141 46.8
HanXRQChr10g0289571 Helianthus annuus HOM05D006722 ORTHO05D007944 3.6e-16 89.4 143 39.9
Lalb_Chr14g0366741 Lupinus albus HOM05D006722 ORTHO05D007944 3.6e-16 89.4 126 46.0
Lj3g0001103 Lotus japonicus HOM05D006722 ORTHO05D007944 7.9e-16 88.2 124 45.2
Lsat_1_v5_gn_4_70120 Lactuca sativa HOM05D006722 ORTHO05D007944 1.4e-15 87.4 136 43.4
Cc05_g06730 Coffea canephora HOM05D006722 ORTHO05D007944 3.0e-15 86.3 93 50.5
PGSC0003DMG400018315 Solanum tuberosum HOM05D006722 ORTHO05D007944 3.9e-15 85.9 96 47.9
ECA246G2923 Erigeron canadensis HOM05D006722 ORTHO05D007944 5.1e-15 85.5 134 38.1
Thecc.02G175500 Theobroma cacao HOM05D006722 ORTHO05D007944 6.7e-15 85.1 137 45.3
DCAR_006245 Daucus carota HOM05D006722 ORTHO05D007944 8.8e-15 84.7 127 44.9
Prupe.3G234900 Prunus persica HOM05D006722 ORTHO05D007944 8.8e-15 84.7 143 42.7
Ciclev10017219m.g Citrus clementina HOM05D006722 ORTHO05D007944 1.5e-14 84.0 129 43.4
Migut.H01051 Erythranthe guttata HOM05D006722 ORTHO05D007944 2.0e-14 83.6 131 45.0
MSTRG.14198 Avicennia marina HOM05D006722 ORTHO05D007944 4.3e-14 82.4 152 41.4
Nitab4.5_0005380g0010 Nicotiana tabacum HOM05D006722 ORTHO05D007944 5.7e-14 82.0 128 39.1
Lj3g0012520 Lotus japonicus HOM05D006722 ORTHO05D007944 1.7e-13 80.5 142 41.5
DCAR_023670 Daucus carota HOM05D006722 ORTHO05D007944 2.8e-13 79.7 139 41.0
Atru.chr6.3036 Acer truncatum HOM05D006722 ORTHO05D007944 3.7e-13 79.3 132 45.5
TAR141G0004 Trochodendron aralioides HOM05D006722 ORTHO05D007944 1.1e-12 77.8 168 37.5
Actinidia11070 Actinidia chinensis HOM05D006722 ORTHO05D007944 3.1e-12 76.3 61 63.9
TWI36G1477 Tripterygium wilfordii HOM05D006722 ORTHO05D007944 3.1e-12 76.3 87 50.6
Aa31LG8G17780 Aethionema arabicum HOM05D006722 ORTHO05D007944 6.9e-12 75.1 148 44.6
MD17G1079900 Malus domestica HOM05D006722 ORTHO05D007944 6.9e-12 75.1 143 39.9
DCAR_006246 Daucus carota HOM05D006722 ORTHO05D007944 9.1e-12 74.7 121 44.6
FAN14G5843 Fragaria x ananassa HOM05D006722 ORTHO05D007944 1.2e-11 74.3 130 40.0
ATR0693G370 Amborella trichopoda HOM05D041462 ORTHO05D007944 1.5e-11 73.9 89 55.1
Actinidia11069 Actinidia chinensis HOM05D006722 ORTHO05D007944 4.5e-11 72.4 106 48.1
Medtr2g090185 Medicago truncatula HOM05D006722 ORTHO05D007944 7.7e-11 71.6 140 40.0
TWI75G0677 Tripterygium wilfordii HOM05D006722 ORTHO05D007944 7.7e-11 71.6 134 41.0
A09p58680 Brassica napus HOM05D006722 ORTHO05D007944 1.0e-10 71.2 132 42.4
Glyma.13G299400 Glycine max HOM05D006722 ORTHO05D007944 1.0e-10 71.2 136 39.7
TPR.G35552 Trifolium pratense HOM05D006722 ORTHO05D007944 1.0e-10 71.2 134 38.8
BraA09t41254Z Brassica rapa HOM05D006722 ORTHO05D007944 1.3e-10 70.9 132 42.4
RcHm_v2.0_Chr2g0162351 Rosa chinensis HOM05D006722 ORTHO05D007944 1.7e-10 70.5 130 41.5
BcaC07g41191 Brassica carinata HOM05D006722 ORTHO05D007944 2.2e-10 70.1 151 39.7
C08p41970 Brassica napus HOM05D006722 ORTHO05D007944 2.2e-10 70.1 151 39.7
BolC8t51760H Brassica oleracea HOM05D006722 ORTHO05D007944 2.2e-10 70.1 151 39.7
Duzib052G0119 Durio zibethinus HOM05D006722 ORTHO05D007944 2.2e-10 70.1 165 37.6
Duzib052G0455 Durio zibethinus HOM05D006722 ORTHO05D007944 2.2e-10 70.1 165 37.6
Thhalv10002109m.g Eutrema salsugineum HOM05D006722 ORTHO05D007944 2.2e-10 70.1 148 39.2
BcaB08g34945 Brassica carinata HOM05D006722 ORTHO05D007944 3.8e-10 69.3 127 43.3
THA.LOC104824711 Tarenaya hassleriana HOM05D006722 ORTHO05D007944 3.8e-10 69.3 101 45.5
ClCG02G017440 Citrullus lanatus HOM05D006722 ORTHO05D007944 6.5e-10 68.6 131 37.4
COL.COLO4_35406 Corchorus olitorius HOM05D006722 ORTHO05D007944 1.1e-09 67.8 138 37.0
PGR042G1420 Punica granatum HOM05D006722 ORTHO05D007944 1.1e-09 67.8 108 43.5
AT2G20870 Arabidopsis thaliana HOM05D006722 ORTHO05D007944 3.2e-09 66.2 140 42.1
Sp3g34120 Schrenkiella parvula HOM05D006722 ORTHO05D007944 3.2e-09 66.2 127 41.7
Manes.13G149300 Manihot esculenta HOM05D006722 ORTHO05D007944 5.5e-09 65.5 151 38.4
CARHR111610 Cardamine hirsuta HOM05D006722 ORTHO05D007944 2.1e-08 63.5 131 43.5
Glyma.06G296300 Glycine max HOM05D006722 ORTHO05D007944 2.1e-08 63.5 139 37.4
Medtr4g037480 Medicago truncatula HOM05D006722 ORTHO05D007944 2.1e-08 63.5 118 38.1
AL3G54120 Arabidopsis lyrata HOM05D006722 ORTHO05D007944 4.7e-08 62.4 132 40.2
Eucgr.A01793 Eucalyptus grandis HOM05D006722 ORTHO05D007944 6.1e-08 62.0 127 36.2
Phvul.011G113200 Phaseolus vulgaris HOM05D006722 ORTHO05D007944 6.1e-08 62.0 162 33.3
Psat5g270720 Pisum sativum HOM05D006722 ORTHO05D007944 1.0e-07 61.2 142 37.3
Ca_01515_v3 Cicer arietinum L. HOM05D006722 ORTHO05D007944 1.4e-07 60.8 142 35.2
Actinidia01434 Actinidia chinensis HOM05D006722 ORTHO05D054353 1.8e-07 60.5 67 53.7
Gohir.A03G158500 Gossypium hirsutum HOM05D006722 ORTHO05D007944 1.8e-07 60.5 128 39.8
Gohir.D02G181700 Gossypium hirsutum HOM05D006722 ORTHO05D007944 1.8e-07 60.5 128 39.8
Gorai.005G204200 Gossypium raimondii HOM05D006722 ORTHO05D007944 1.8e-07 60.5 128 39.8
Carub.0003s3553 Capsella rubella HOM05D006722 ORTHO05D007944 2.3e-07 60.1 143 39.9
Lalb_Chr19g0135361 Lupinus albus HOM05D006722 ORTHO05D007944 3.0e-07 59.7 130 39.2
VMungo1080G0484 Vigna mungo HOM05D006722 ORTHO05D007944 3.0e-07 59.7 148 36.5
FAN02G2988 Fragaria x ananassa HOM05D006722 ORTHO05D007944 6.7e-07 58.5 115 37.4
Medtr4g037560 Medicago truncatula HOM05D006722 ORTHO05D007944 6.7e-07 58.5 133 38.3
Gohir.D12G141200 Gossypium hirsutum HOM05D006722 ORTHO05D007944 8.8e-07 58.2 130 37.7
Gohir.D06G117266 Gossypium hirsutum HOM05D006722 ORTHO05D007944 1.1e-06 57.8 137 37.2
Hma1.2p1_0875F.1_g231430 Hydrangea macrophylla HOM05D006722 ORTHO05D007944 2.6e-06 56.6 97 45.4
HPP92_001821 Vanilla planifolia HOM05D026263 ORTHO05D007944 2.6e-06 56.6 91 42.9
Gohir.D01G197650 Gossypium hirsutum HOM05D006722 ORTHO05D007944 7.4e-06 55.1 137 36.5
SGA_v2.0_scaffold356G49791 Striga asiatica HOM05D006722 ORTHO05D007944 7.4e-06 55.1 85 42.4


User provided reference genes

Program Settings