Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 2299.2 1159 100.0
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1992.6 1167 87.9
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1900.9 1174 83.4
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1899.0 1172 83.5
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1898.6 1172 83.5
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1892.1 1173 82.8
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1891.7 1173 82.9
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1886.3 1173 83.5
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1885.5 1173 82.4
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1880.5 1173 82.7
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1879.8 1209 81.6
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1878.6 1172 83.1
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1877.8 1213 81.5
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1872.8 1172 82.5
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1870.9 1177 82.2
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1870.1 1172 82.3
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1862.8 1183 81.4
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1857.8 1173 82.0
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1855.9 1172 81.5
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1845.9 1183 81.1
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1840.9 1174 81.5
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1838.9 1174 81.4
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1838.9 1173 81.7
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1832.8 1174 81.3
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1830.8 1221 78.5
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1829.7 1221 78.7
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1828.9 1217 78.7
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1823.5 1173 79.8
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1823.1 1196 78.8
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1821.2 1221 78.4
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1820.8 1229 77.5
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1814.7 1196 78.8
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1814.7 1173 80.1
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1812.7 1226 76.8
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1808.1 1174 79.0
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1807.0 1209 77.6
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1807.0 1170 80.1
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1806.2 1209 77.5
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1806.2 1174 80.2
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1800.4 1173 79.8
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1799.3 1173 79.5
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1798.5 1170 80.2
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1796.9 1174 79.5
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1793.5 1173 79.5
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1791.5 1171 78.7
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1788.5 1173 79.5
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1786.9 1173 78.7
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1786.9 1176 79.3
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1784.2 1175 78.1
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1780.8 1174 79.6
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1777.7 1174 79.2
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1774.2 1174 79.2
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1774.2 1172 79.8
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1773.1 1168 78.8
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1770.7 1170 78.3
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1770.0 1170 78.2
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1768.8 1158 78.8
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1768.8 1178 78.0
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1763.0 1201 77.4
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1762.3 1171 78.7
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1760.7 1174 78.3
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1755.3 1200 76.7
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1755.3 1171 78.0
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1754.6 1175 77.0
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1750.7 1173 76.9
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1745.3 1172 77.0
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1745.3 1175 77.2
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1743.4 1232 74.2
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1742.6 1168 76.6
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1741.1 1172 77.0
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1738.4 1209 75.8
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1736.1 1177 77.3
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1732.6 1172 76.8
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1732.6 1172 78.2
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1730.7 1177 77.2
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1727.6 1172 77.7
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1727.2 1174 77.1
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1725.3 1177 77.0
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1724.5 1174 76.0
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1719.5 1191 76.8
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1719.1 1169 76.6
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1715.7 1234 73.4
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1715.3 1173 76.1
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1714.9 1176 75.8
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1714.1 1167 76.9
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1713.0 1174 75.9
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1708.7 1169 76.6
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1701.8 1232 72.5
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1699.1 1173 75.2
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1698.7 1172 75.6
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1698.3 1177 75.4
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1696.4 1173 75.4
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1696.4 1172 75.6
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1695.2 1185 76.5
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1694.9 1173 75.1
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1693.7 1178 75.5
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1692.9 1175 75.7
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1692.6 1179 75.3
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1691.8 1168 76.3
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1689.9 1177 75.4
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1689.1 1101 79.7
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1673.7 1148 76.0
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1672.5 1073 80.2
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1666.4 1173 75.5
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1660.2 1176 75.3
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1659.8 1179 74.3
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1648.6 1174 74.0
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1647.5 1173 75.3
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1645.6 1203 72.8
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1644.8 1174 73.9
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1638.6 1195 73.8
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1618.6 1146 74.1
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1602.0 1179 71.7
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1598.9 948 86.7
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1576.2 1177 70.6
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1567.4 1178 70.3
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1555.8 1104 74.2
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1548.9 1172 69.4
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1538.9 1172 68.7
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1503.0 1173 69.5
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1476.8 946 80.0
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1426.0 1035 73.8
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1424.5 1179 65.8
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1376.7 965 75.0
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1364.4 971 76.7
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1352.4 964 76.2
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1335.5 946 74.8
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1324.3 960 74.3
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1293.9 889 76.3
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1269.2 1168 60.7
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1240.7 815 79.8
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1187.6 806 77.0
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1177.2 813 76.6
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1145.6 808 75.6
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 0.0e+00 1106.3 727 80.3
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1077.4 1157 56.0
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 8.7e-293 1010.7 1168 49.1
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 6.5e-288 994.6 1203 48.0
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.6e-278 963.4 538 90.5
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 2.4e-266 922.9 604 81.5
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.6e-262 910.2 718 69.4
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 6.0e-193 679.1 432 79.4
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 5.1e-168 596.3 360 82.5
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 7.4e-159 565.8 887 44.0
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.2e-140 505.4 307 81.1
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 1.3e-134 485.3 303 78.9
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.3e-134 485.3 303 78.9
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 3.2e-130 470.7 612 48.2
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 7.0e-125 453.0 285 82.1
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 5.5e-122 443.4 807 36.2
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 4.3e-106 390.6 1337 28.3
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 7.8e-100 369.8 222 80.2
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 3.0e-91 341.3 506 45.3
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 7.3e-90 336.7 199 85.9
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 4.7e-81 307.4 281 64.1
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.8e-80 305.4 182 83.5
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 1.8e-80 305.4 205 74.1
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 4.8e-73 280.8 187 71.1
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.7e-70 272.3 259 63.7
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 7.9e-68 263.5 180 75.6
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 2.8e-65 255.0 144 87.5
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 3.8e-62 244.6 186 69.4
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 6.0e-52 210.7 152 72.4
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 3.9e-51 208.0 130 83.8
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 1.1e-45 189.9 118 83.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 9.3e-45 186.8 125 76.0
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 6.5e-38 164.1 92 90.2
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 4.5e-31 141.4 86 80.2
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 4.5e-31 141.4 91 74.7
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 4.5e-31 141.4 91 74.7
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.3e-19 102.4 78 70.5
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 2.6e-18 99.0 83 63.9
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 4.4e-18 98.2 63 73.0
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 2.8e-17 95.5 81 54.3
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 4.8e-17 94.7 59 76.3
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 6.3e-17 94.4 46 84.8
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.9e-13 82.8 101 50.5
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 7.7e-07 60.8 65 50.8


User provided reference genes

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