Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017405 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 3.8e-185 651.4 330 100.0
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 4.3e-27 126.3 82 81.7
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 7.3e-27 125.6 80 81.2
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 9.5e-27 125.2 71 87.3
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 2.1e-26 124.0 69 91.3
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 2.1e-26 124.0 69 91.3
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 2.8e-26 123.6 69 91.3
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 4.7e-26 122.9 69 89.9
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 4.7e-26 122.9 77 81.8
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 6.2e-26 122.5 71 87.3
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 6.2e-26 122.5 69 88.4
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 6.2e-26 122.5 69 89.9
Cpa.g.sc166.17 Carica papaya HOM05D006050 ORTHO05D007457 1.1e-25 121.7 69 91.3
Cpa.g.sc166.18 Carica papaya HOM05D006050 ORTHO05D007457 1.1e-25 121.7 69 91.3
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 1.1e-25 121.7 69 88.4
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.1e-25 121.7 69 88.4
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 1.1e-25 121.7 69 88.4
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 1.1e-25 121.7 71 88.7
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 1.1e-25 121.7 69 89.9
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 1.4e-25 121.3 122 60.7
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 1.8e-25 120.9 71 85.9
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 1.8e-25 120.9 80 76.2
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 1.8e-25 120.9 78 79.5
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 1.8e-25 120.9 69 88.4
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 2.3e-25 120.6 78 78.2
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 3.1e-25 120.2 71 85.9
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 3.1e-25 120.2 73 86.3
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 4.0e-25 119.8 116 62.1
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 5.2e-25 119.4 69 87.0
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 5.2e-25 119.4 79 79.7
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 8.9e-25 118.6 80 76.2
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 8.9e-25 118.6 77 79.2
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 1.2e-24 118.2 80 75.0
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 1.2e-24 118.2 105 65.7
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 1.5e-24 117.9 77 79.2
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 2.0e-24 117.5 69 84.1
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 2.0e-24 117.5 69 87.0
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 2.0e-24 117.5 77 77.9
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 2.0e-24 117.5 77 77.9
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 2.0e-24 117.5 116 58.6
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 2.6e-24 117.1 122 55.7
Lalb_Chr18g0055531 Lupinus albus HOM05D006050 ORTHO05D007457 2.6e-24 117.1 73 79.5
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 3.4e-24 116.7 73 83.6
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 3.4e-24 116.7 73 83.6
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 3.4e-24 116.7 69 84.1
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 3.4e-24 116.7 78 75.6
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 4.4e-24 116.3 73 80.8
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 4.4e-24 116.3 80 77.5
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 7.5e-24 115.5 77 76.6
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.3e-23 114.8 122 54.9
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 1.3e-23 114.8 99 63.6
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 1.7e-23 114.4 122 55.7
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 1.7e-23 114.4 78 74.4
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 1.7e-23 114.4 73 80.8
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 2.2e-23 114.0 71 80.3
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 2.2e-23 114.0 122 54.1
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 2.2e-23 114.0 81 74.1
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 3.7e-23 113.2 71 80.3
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 4.9e-23 112.8 69 81.2
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 4.9e-23 112.8 69 81.2
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 4.9e-23 112.8 69 82.6
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 4.9e-23 112.8 69 79.7
ATR0044G011 Amborella trichopoda HOM05D006050 ORTHO05D007457 6.4e-23 112.5 69 81.2
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 6.4e-23 112.5 77 75.3
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 6.4e-23 112.5 69 81.2
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 8.3e-23 112.1 69 78.3
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 8.3e-23 112.1 71 80.3
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 8.3e-23 112.1 69 79.7
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 1.1e-22 111.7 69 81.2
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 1.1e-22 111.7 99 62.6
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 1.4e-22 111.3 122 53.3
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 1.9e-22 110.9 69 81.2
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 1.9e-22 110.9 69 81.2
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 1.9e-22 110.9 69 81.2
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 1.9e-22 110.9 77 72.7
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 1.9e-22 110.9 73 75.3
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 3.2e-22 110.2 69 81.2
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 4.1e-22 109.8 69 79.7
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 4.1e-22 109.8 69 79.7
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 5.4e-22 109.4 122 54.1
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 5.4e-22 109.4 73 75.3
Aa31LG6G960 Aethionema arabicum HOM05D006050 ORTHO05D007457 7.1e-22 109.0 77 71.4
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 7.1e-22 109.0 78 70.5
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 1.2e-21 108.2 71 74.6
Rhsim01G0194900 Rhododendron simsii HOM05D007230 ORTHO05D004756 1.6e-21 107.8 94 55.3
Rhsim11G0068500 Rhododendron simsii HOM05D007230 ORTHO05D004756 2.1e-21 107.5 94 54.3
Mapoly0001s0010 Marchantia polymorpha HOM05D006050 ORTHO05D007457 3.5e-21 106.7 69 75.4
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 4.6e-21 106.3 69 76.8
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 4.6e-21 106.3 73 72.6
Rhsim04G0054200 Rhododendron simsii HOM05D007230 ORTHO05D004756 6.0e-21 105.9 90 55.6
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 7.8e-21 105.5 71 70.4
Rhsim04G0107400 Rhododendron simsii HOM05D007230 ORTHO05D004756 7.8e-21 105.5 90 54.4
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 1.0e-20 105.1 62 82.3
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 1.0e-20 105.1 99 63.6
Rhsim07G0087400 Rhododendron simsii HOM05D007230 ORTHO05D004756 1.3e-20 104.8 94 53.2
TWI73G0803 Tripterygium wilfordii HOM05D007230 ORTHO05D004756 1.7e-20 104.4 92 54.3
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 3.0e-20 103.6 71 73.2
HPP92_008747 Vanilla planifolia HOM05D006050 ORTHO05D007457 8.6e-20 102.1 75 68.0
Rhsim12G0049700 Rhododendron simsii HOM05D007230 ORTHO05D004756 1.1e-19 101.7 93 53.8
AUR62030212 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.2e-18 98.2 78 65.4
MELO3C031197.2 Cucumis melo HOM05D007230 ORTHO05D004756 2.1e-18 97.4 93 51.6
MELO3C032792.2 Cucumis melo HOM05D007230 ORTHO05D004756 1.1e-17 95.1 95 48.4
MELO3C029660.2 Cucumis melo HOM05D007230 ORTHO05D004756 2.3e-17 94.0 131 43.5
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 3.1e-17 93.6 61 72.1
MELO3C029711.2 Cucumis melo HOM05D007230 ORTHO05D004756 5.2e-17 92.8 93 49.5
MELO3C029643.2 Cucumis melo HOM05D007230 ORTHO05D004756 1.2e-16 91.7 92 50.0
MELO3C033490.2 Cucumis melo HOM05D007230 ORTHO05D004756 1.2e-16 91.7 100 50.0
MELO3C031511.2 Cucumis melo HOM05D007230 ORTHO05D004756 1.5e-16 91.3 93 49.5
Psat5g083840 Pisum sativum HOM05D007230 ORTHO05D004756 9.9e-16 88.6 93 47.3
CSS0041454 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 2.2e-15 87.4 92 47.8
Rhsim05G0139800 Rhododendron simsii HOM05D007230 ORTHO05D004756 3.7e-15 86.7 78 51.3
MELO3C029746.2 Cucumis melo HOM05D007230 ORTHO05D004756 4.9e-15 86.3 74 56.8
Psat1g026880 Pisum sativum HOM05D007230 ORTHO05D004756 4.9e-15 86.3 93 47.3
Psat0ss2585g0560 Pisum sativum HOM05D007230 ORTHO05D004756 6.4e-15 85.9 93 46.2
Psat2g117040 Pisum sativum HOM05D007230 ORTHO05D004756 8.4e-15 85.5 93 46.2
MELO3C030889.2 Cucumis melo HOM05D007230 ORTHO05D004756 1.1e-14 85.1 83 53.0
Psat7g056280 Pisum sativum HOM05D007230 ORTHO05D004756 1.1e-14 85.1 93 46.2
MELO3C032600.2 Cucumis melo HOM05D007230 ORTHO05D004756 1.4e-14 84.7 82 48.8
MELO3C030315.2 Cucumis melo HOM05D007230 ORTHO05D004756 4.1e-14 83.2 97 43.3
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 9.2e-14 82.0 68 61.8
MELO3C029164.2 Cucumis melo HOM05D007230 ORTHO05D004756 2.1e-13 80.9 73 54.8
Psat0ss1196g0040 Pisum sativum HOM05D007230 ORTHO05D004756 2.1e-13 80.9 93 46.2
PSO063G2775 Papaver somniferum HOM05D006050 ORTHO05D007457 3.5e-13 80.1 45 84.4
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 3.5e-13 80.1 47 91.5
Psat0s1792g0040 Pisum sativum HOM05D000659 ORTHO05D000505 1.0e-12 78.6 93 44.1
Rhsim12G0018900 Rhododendron simsii HOM05D007230 ORTHO05D004756 2.3e-12 77.4 71 52.1
MCO07G478 Micromonas commoda HOM05D006050 ORTHO05D007457 6.6e-12 75.9 84 52.4
Rhsim10G0179600 Rhododendron simsii HOM05D007230 ORTHO05D004756 1.1e-11 75.1 69 52.2
Psat5g096800 Pisum sativum HOM05D007230 ORTHO05D004756 3.3e-11 73.6 81 45.7
QL08p048522 Quercus lobata HOM05D000002 ORTHO05D000001 3.3e-11 73.6 89 43.8
MELO3C029851.2 Cucumis melo HOM05D007230 ORTHO05D004756 5.6e-11 72.8 73 49.3
QL02p069342 Quercus lobata HOM05D000002 ORTHO05D000001 9.6e-11 72.0 89 42.7
QL04p097278 Quercus lobata HOM05D000002 ORTHO05D000001 9.6e-11 72.0 87 42.5
QL11p016059 Quercus lobata HOM05D000002 ORTHO05D000001 1.2e-10 71.6 87 42.5
MELO3C031996.2 Cucumis melo HOM05D007230 ORTHO05D004756 8.1e-10 68.9 115 33.9
QL10p052423 Quercus lobata HOM05D000002 ORTHO05D000001 1.4e-09 68.2 87 41.4
CSS0042171 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 6.8e-09 65.9 65 52.3
PSO170G1977 Papaver somniferum HOM05D000002 ORTHO05D000001 8.9e-09 65.5 91 39.6
CSS0046979 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 1.5e-08 64.7 71 49.3
CSS0018761 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 2.0e-08 64.3 65 50.8
MELO3C033487.2 Cucumis melo HOM05D007230 ORTHO05D004756 3.4e-08 63.5 96 36.5
CSS0009610 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 5.8e-08 62.8 71 46.5
CSS0001150 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 9.9e-08 62.0 65 50.8
SHI30625 Sapria himalayana HOM05D007230 ORTHO05D004756 9.9e-08 62.0 80 41.2
CSS0025354 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 1.3e-07 61.6 65 49.2
CSS0002016 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 2.2e-07 60.8 65 49.2
MELO3C030814.2 Cucumis melo HOM05D007230 ORTHO05D004756 2.2e-07 60.8 66 48.5
CSS0047666 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 3.8e-07 60.1 65 50.8
PSO832G0254 Papaver somniferum HOM05D007230 ORTHO05D004756 3.8e-07 60.1 89 37.1
MELO3C033139.2 Cucumis melo HOM05D007230 ORTHO05D004756 6.4e-07 59.3 94 33.0
PSO675G0495 Papaver somniferum HOM05D007230 ORTHO05D004756 6.4e-07 59.3 95 36.8
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 6.4e-07 59.3 64 60.9
CSS0035882 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 8.4e-07 58.9 65 47.7
PSO478G2157 Papaver somniferum HOM05D007230 ORTHO05D004756 1.1e-06 58.5 94 35.1
CSS0024569 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 1.9e-06 57.8 70 48.6
CSS0042753 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 1.9e-06 57.8 70 48.6
CSS0043112 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 1.9e-06 57.8 70 48.6
PSO339G5468 Papaver somniferum HOM05D007230 ORTHO05D004756 1.9e-06 57.8 91 33.0
CSS0016168 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 4.2e-06 56.6 70 47.1
CSS0009938 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 5.4e-06 56.2 63 49.2


User provided reference genes

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