Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 3495.7 1849 100.0
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 2551.5 1763 76.2
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 2402.1 1892 69.5
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 2321.2 1736 71.6
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2258.8 1926 65.1
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2238.8 1905 64.3
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 2224.1 1932 63.5
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2195.6 1907 63.0
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2161.7 1899 62.5
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 2132.8 1905 63.0
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 2118.2 1888 62.2
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 2095.1 1905 61.0
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 2090.5 1904 61.2
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 2062.3 1938 60.5
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 2045.8 1923 58.7
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 2036.9 1905 60.6
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 2035.8 1770 63.3
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 2021.9 1911 60.0
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 2014.6 1902 57.9
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 2011.9 1906 60.0
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 2011.1 1909 60.3
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 2004.6 1886 60.3
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 2003.8 1887 60.5
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1995.3 1731 62.8
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 1986.1 1905 58.8
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1986.1 1905 58.7
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1978.0 1905 58.5
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1977.6 1905 57.3
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1973.7 1905 58.6
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1963.7 1897 58.3
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 1956.8 1911 57.6
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1953.3 1908 58.0
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1948.7 1979 56.4
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 1942.9 1899 58.2
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1940.2 1904 56.7
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1939.1 1906 56.8
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 1906.7 1907 57.2
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 1902.5 1906 55.8
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 1900.2 1908 55.6
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1899.0 1901 57.3
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 1898.2 1909 56.2
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 1895.9 1901 58.0
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1894.8 1934 56.2
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1879.8 1912 55.8
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 1877.1 1923 55.7
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 1869.7 1908 55.2
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 1867.8 1910 54.6
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 1859.7 1929 55.4
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 1848.9 1909 55.5
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 1848.6 1902 55.5
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 1844.3 1900 55.4
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 1839.7 1905 55.4
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 1837.8 1906 54.5
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 1833.5 1903 55.0
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 1824.3 1906 55.3
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 1810.4 1903 54.6
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1792.7 1901 54.7
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1790.8 1901 55.6
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1764.2 1678 59.0
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1760.7 1806 54.7
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1718.7 1916 53.2
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 1688.7 1895 52.9
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1660.6 1891 51.3
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1642.1 1882 51.7
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 1632.5 1901 50.3
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1617.1 1983 49.4
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1524.2 1756 51.6
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1521.1 1901 48.7
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1493.0 1906 49.2
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1484.2 1920 47.6
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1457.2 1706 51.2
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1448.0 1967 45.8
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1437.2 1704 51.2
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1410.6 1702 50.4
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1395.6 1568 52.2
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1264.6 1265 53.9
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1242.6 1709 42.8
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1191.4 1523 44.6
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1187.2 1024 65.4
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1119.8 1149 55.0
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 0.0e+00 1113.2 1306 48.8
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 0.0e+00 1087.0 1028 57.3
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1085.5 894 66.4
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 2.7e-304 1049.7 1131 55.1
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 1.2e-296 1024.2 2012 37.8
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 9.1e-268 928.3 1378 41.2
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 9.4e-265 918.3 846 58.7
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 1.6e-256 891.0 1981 34.8
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 1.7e-250 870.9 1667 35.0
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 2.2e-205 721.1 1440 34.0
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 2.6e-182 644.4 692 53.0
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.2e-173 614.8 326 96.9
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 2.5e-153 548.1 726 45.6
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 1.3e-133 482.6 339 73.5
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 3.8e-133 481.1 341 76.5
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 4.4e-129 467.6 564 54.3
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 4.5e-126 457.6 2176 25.7
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 3.2e-124 451.4 335 65.4
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.2e-86 326.6 246 73.2
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 6.2e-75 287.7 233 64.4
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 1.5e-73 283.1 347 57.3
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 1.3e-69 270.0 380 52.6
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.8e-67 262.3 133 99.2
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 9.9e-65 253.8 231 58.4
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 1.9e-63 249.6 306 55.6
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 9.0e-50 204.1 176 66.5
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 6.5e-48 198.0 170 64.7
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 1.3e-45 190.3 202 49.5
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 7.4e-44 184.5 217 57.6
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 1.1e-42 180.6 214 51.4
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 9.7e-36 157.5 128 71.1
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 2.9e-32 146.0 339 43.1
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 9.7e-28 131.0 130 55.4
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 3.7e-27 129.0 136 52.2
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 1.1e-26 127.5 130 56.2
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 2.9e-24 119.4 203 39.9
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.5e-23 117.1 368 41.3
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 8.0e-22 111.3 85 67.1
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 5.3e-18 98.6 65 72.3
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 2.0e-17 96.7 187 41.2
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 7.7e-17 94.7 82 84.1
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 6.1e-14 85.1 78 55.1
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 4.0e-13 82.4 105 41.9
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 5.2e-13 82.0 146 35.6
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 1.3e-11 77.4 66 57.6
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 2.4e-10 73.2 88 51.1
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 2.4e-10 73.2 88 51.1
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 9.1e-10 71.2 54 63.0
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 2.0e-09 70.1 49 79.6
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 3.5e-09 69.3 48 68.8
Gohir.D06G038000 Gossypium hirsutum HOM05D004910 ORTHO05D030909 8.0e-06 58.2 43 67.4


User provided reference genes

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