Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017331 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-48 195.7 95 100.0
CSS0000038 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-32 141.0 75 89.3
SHI52580 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-24 114.4 53 96.2
SHI53128 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-24 114.4 53 96.2
CSS0042530 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.1e-23 111.3 53 94.3
CSS0017873 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.5e-20 100.9 53 83.0
CSS0047274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-19 99.0 51 84.3
CSS0044856 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-19 98.6 53 81.1
CSS0017329 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-19 98.2 53 79.2
CSS0014778 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-18 95.1 53 79.2
CSS0027637 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.8e-18 93.6 51 80.4
Nn1g02421 Nelumbo nucifera HOM05D000002 ORTHO05D000001 8.8e-18 93.6 50 80.0
CSS0024481 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-17 92.0 48 81.2
Nn5g30083 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.6e-17 92.0 53 79.2
Nn5g28050 Nelumbo nucifera HOM05D000002 ORTHO05D000001 9.8e-17 90.1 43 90.7
Hma1.2p1_0171F.1_g075850 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.7e-16 89.4 48 79.2
RcHm_v2.0_Chr7g0237911 Rosa chinensis HOM05D000002 ORTHO05D000001 3.7e-16 88.2 53 71.7
RcHm_v2.0_Chr1g0330731 Rosa chinensis HOM05D000002 ORTHO05D000001 4.8e-16 87.8 53 71.7
CSS0045643 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.3e-16 87.4 44 84.1
CSS0039281 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.3e-16 87.0 45 84.4
Sopen01g009120 Solanum pennellii HOM05D000002 ORTHO05D000001 8.3e-16 87.0 52 69.2
CSS0005068 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-15 85.9 42 88.1
Sopen03g025100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-15 85.9 52 69.2
CSS0019043 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-15 85.1 45 82.2
Hma1.2p1_0010F.1_g006990 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.1e-15 84.7 46 80.4
Rhsim13G0212300 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.1e-15 84.7 41 87.8
CSS0045479 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.4e-15 84.3 45 82.2
Lalb_Chr23g0274091 Lupinus albus HOM05D000002 ORTHO05D000001 7.0e-15 84.0 46 76.1
Hma1.2p1_0176F.1_g077340 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-14 83.2 54 72.2
Hma1.2p1_0414F.1_g147800 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-14 83.2 48 77.1
Hma1.2p1_0774F.1_g216290 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-14 83.2 53 69.8
Hma1.2p1_2049F.1_g312480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-14 83.2 54 72.2
Nn2g14659 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.2e-14 83.2 53 67.9
QL11p047249 Quercus lobata HOM05D000002 ORTHO05D000001 1.2e-14 83.2 53 69.8
RcHm_v2.0_Chr2g0154461 Rosa chinensis HOM05D000002 ORTHO05D000001 1.2e-14 83.2 53 69.8
RcHm_v2.0_Chr7g0198271 Rosa chinensis HOM05D000002 ORTHO05D000001 1.2e-14 83.2 53 69.8
Atru.chr4.1540 Acer truncatum HOM05D000002 ORTHO05D000001 1.6e-14 82.8 53 67.9
QL09p034601 Quercus lobata HOM05D000002 ORTHO05D000001 1.6e-14 82.8 53 69.8
Hma1.2p1_0184F.1_g081330 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.0e-14 82.4 53 69.8
Nn1g06976 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.0e-14 82.4 50 68.0
Rhsim09G0033700 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.7e-14 82.0 92 45.7
Sopen01g017420 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 82.0 53 67.9
Sopen05g010210 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 82.0 49 71.4
Sopen05g010950 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 82.0 53 67.9
Sopen05g018370 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 82.0 53 67.9
Sopen06g017010 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 82.0 53 67.9
Sopen10g016240 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 82.0 49 71.4
Sopen10g031560 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 82.0 49 71.4
Sopen11g010630 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 82.0 49 71.4
CSS0012950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.5e-14 81.6 42 85.7
Hma1.2p1_0774F.1_g216320 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.5e-14 81.6 53 67.9
Sopen10g021260 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-14 81.6 52 65.4
CSS0040082 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.5e-14 81.3 42 85.7
Nn1g06669 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.5e-14 81.3 48 75.0
Hma1.2p1_0774F.1_g216300 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.9e-14 80.9 53 67.9
Hma1.2p1_1498F.1_g287120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.9e-14 80.9 53 69.8
Hma1.2p1_1768F.1_g301590 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.9e-14 80.9 42 81.0
MD01G1101100 Malus domestica HOM05D000002 ORTHO05D000001 5.9e-14 80.9 49 71.4
Nn1g04729 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.9e-14 80.9 48 72.9
Nn1g08060 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.9e-14 80.9 51 74.5
QL03p066067 Quercus lobata HOM05D000002 ORTHO05D000001 5.9e-14 80.9 52 67.3
CSS0040283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.7e-14 80.5 42 81.0
CSS0019125 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-13 80.1 49 79.6
RhsimUnG0229000 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.0e-13 80.1 41 82.9
Sopen01g013490 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-13 80.1 52 63.5
CSS0001792 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-13 79.7 48 72.9
CSS0013769 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-13 79.3 55 65.5
CSS0015841 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-13 79.3 48 70.8
CSS0046072 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-13 79.3 48 70.8
Ciclev10013956m.g Citrus clementina HOM05D000002 ORTHO05D000001 1.7e-13 79.3 48 72.9
Manes.10G112229 Manihot esculenta HOM05D000002 ORTHO05D000001 1.7e-13 79.3 53 66.0
Nn2g12419 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.7e-13 79.3 47 74.5
Nn6g34560 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.7e-13 79.3 47 74.5
Nn6g34561 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.7e-13 79.3 47 74.5
Atru.chr4.75 Acer truncatum HOM05D000002 ORTHO05D000001 2.3e-13 79.0 55 65.5
Hma1.2p1_1719F.1_g299230 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.3e-13 79.0 42 78.6
RcHm_v2.0_Chr4g0409151 Rosa chinensis HOM05D000002 ORTHO05D000001 2.3e-13 79.0 51 64.7
Sopen11g022020 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-13 79.0 53 66.0
CSS0050078 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-13 78.6 48 70.8
Rhsim03G0172600 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.9e-13 78.6 47 72.3
RhsimUnG0178000 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.9e-13 78.6 47 72.3
RhsimUnG0182300 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.9e-13 78.6 47 72.3
Sopen05g007860 Solanum pennellii HOM05D000002 ORTHO05D000001 3.8e-13 78.2 53 66.0
Nn2g13324 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.0e-13 77.8 48 68.8
Nn4g26285 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.0e-13 77.8 47 72.3
Atru.chr10.1094 Acer truncatum HOM05D000002 ORTHO05D000001 6.5e-13 77.4 45 71.1
CSS0020765 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-13 77.4 45 73.3
CANSAT01G2627 Cannabis sativa HOM05D000002 ORTHO05D000001 6.5e-13 77.4 48 68.8
Rhsim01G0080600 Rhododendron simsii HOM05D000002 ORTHO05D000001 8.6e-13 77.0 47 70.2
Rhsim02G0093500 Rhododendron simsii HOM05D000002 ORTHO05D000001 8.6e-13 77.0 47 70.2
Sopen07g005890 Solanum pennellii HOM05D000002 ORTHO05D000001 8.6e-13 77.0 46 71.7
Sopen11g010290 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-12 76.3 48 66.7
FvH4_1g02351 Fragaria vesca HOM05D000002 ORTHO05D000001 1.9e-12 75.9 47 70.2
Nn1g07710 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.9e-12 75.9 47 70.2
Nn4g26209 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.9e-12 75.9 48 72.9
Sopen01g013480 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-12 75.9 41 78.0
Sopen03g020180 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-12 75.5 53 66.0
TWI56G1078 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 2.5e-12 75.5 43 76.7
EL10Ac8g19578 Beta vulgaris HOM05D000002 ORTHO05D000001 3.2e-12 75.1 47 66.0
CSS0010947 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-12 75.1 55 60.0
Lalb_Chr02g0155271 Lupinus albus HOM05D000002 ORTHO05D000001 4.2e-12 74.7 51 60.8
PSO541G3208 Papaver somniferum HOM05D000002 ORTHO05D000001 4.2e-12 74.7 45 73.3
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.2e-12 74.7 43 74.4
FvH4_6g43841 Fragaria vesca HOM05D000002 ORTHO05D000001 5.5e-12 74.3 43 72.1
CSS0016567 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-11 73.2 47 63.8
Cpa.g.sc138.15 Carica papaya HOM05D000002 ORTHO05D000001 1.2e-11 73.2 45 68.9
Nn4g24384 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.2e-11 73.2 47 68.1
CSS0041440 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-11 72.8 48 66.7
Psat4g115640 Pisum sativum HOM05D000002 ORTHO05D000001 1.6e-11 72.8 48 62.5
VMungo1309G0289 Vigna mungo HOM05D002892 ORTHO05D003224 1.6e-11 72.8 54 57.4
Psat1g213360 Pisum sativum HOM05D000002 ORTHO05D000001 2.1e-11 72.4 48 60.4
CSS0046044 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.8e-11 72.0 41 70.7
CSS0002244 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.7e-11 71.2 43 67.4
Nn2g10460 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.7e-11 71.2 45 73.3
Nn2g15368 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.7e-11 71.2 35 85.7
Psat1g044880 Pisum sativum HOM05D008069 ORTHO05D010454 6.1e-11 70.9 44 65.9
Nn3g21197 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.0e-10 70.1 40 75.0
EL10Ac6g13816 Beta vulgaris HOM05D000002 ORTHO05D000001 1.4e-10 69.7 49 61.2
CSS0021106 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-10 69.7 31 93.5
Ciclev10023933m.g Citrus clementina HOM05D000002 ORTHO05D000001 1.4e-10 69.7 49 63.3
ECA246G0354 Erigeron canadensis HOM05D000230 ORTHO05D000176 1.4e-10 69.7 47 61.7
Nn1g08143 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.8e-10 69.3 31 93.5
Sopen01g011890 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-10 68.9 46 65.2
CSS0034655 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-10 68.2 31 90.3
CSS0046990 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-10 68.2 31 90.3
Nn8g40241 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.0e-10 68.2 31 90.3
CSS0013581 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.2e-10 67.8 37 73.0
ECA233G1773 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-10 67.8 50 56.0
ECA238G2859 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-10 67.8 53 49.1
Manes.09G095934 Manihot esculenta HOM05D000002 ORTHO05D000001 5.2e-10 67.8 41 70.7
ECA234G4446 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.8e-10 67.0 50 58.0
ECA240G1585 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.8e-10 67.0 48 54.2
ECA234G3833 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-09 66.6 49 53.1
Nn1g02200 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.2e-09 66.6 47 59.6
ECA246G4670 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-09 66.2 48 54.2
Nn1g04728 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.5e-09 66.2 48 64.6
ECA233G2170 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.6e-09 65.5 55 52.7
ECA247G3331 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.4e-09 65.1 48 54.2
Medtr8g465620 Medicago truncatula HOM05D000002 ORTHO05D000001 3.4e-09 65.1 44 61.4
Psat4g144840 Pisum sativum HOM05D000002 ORTHO05D000001 3.4e-09 65.1 49 51.0
EL10Ac9g20778 Beta vulgaris HOM05D000002 ORTHO05D000001 4.4e-09 64.7 42 61.9
C03p36830 Brassica napus HOM05D000002 ORTHO05D000001 4.4e-09 64.7 43 53.5
ECA232G0373 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.5e-09 63.9 48 52.1
ECA234G3983 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.5e-09 63.9 42 59.5
ECA246G0844 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.5e-09 63.9 42 57.1
ECA248G1333 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.5e-09 63.9 42 64.3
Ca_19958_v3 Cicer arietinum L. HOM05D003420 ORTHO05D003970 1.7e-08 62.8 38 65.8
Sopen01g020600 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-08 62.8 42 61.9
Sopen02g009840 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-08 62.8 42 61.9
Sopen06g007920 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-08 62.8 42 61.9
Sopen09g029100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-08 62.8 42 61.9
ECA238G0437 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-08 62.4 44 50.0
FvH4_3g12332 Fragaria vesca HOM05D000002 ORTHO05D000001 3.7e-08 61.6 54 48.1
FvH4_4g08211 Fragaria vesca HOM05D000002 ORTHO05D000001 3.7e-08 61.6 42 57.1
FvH4_4g30902 Fragaria vesca HOM05D000002 ORTHO05D000001 3.7e-08 61.6 54 48.1
Sopen12g026370 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-08 61.6 42 59.5
VMungo0331G0698 Vigna mungo HOM05D000092 ORTHO05D000042 3.7e-08 61.6 76 44.7
BolC4t26198H Brassica oleracea HOM05D000002 ORTHO05D000001 6.3e-08 60.8 42 57.1
FvH4_7g13272 Fragaria vesca HOM05D000002 ORTHO05D000001 6.3e-08 60.8 42 59.5
CSS0044932 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.3e-08 60.5 48 60.4
ECA232G4093 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.3e-08 60.5 42 52.4
ECA240G3412 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.3e-08 60.5 39 53.8
Psat5g133720 Pisum sativum HOM05D000002 ORTHO05D000001 1.1e-07 60.1 37 67.6
ECA246G0479 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-07 59.7 43 55.8
ECA248G2341 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-07 59.3 42 54.8
CSS0000424 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-07 58.9 38 65.8
ECA233G2113 Erigeron canadensis HOM05D001255 ORTHO05D001246 2.4e-07 58.9 37 56.8
Sopen01g007590 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-07 58.9 42 59.5
FvH4_3g45132 Fragaria vesca HOM05D000002 ORTHO05D000001 3.1e-07 58.5 42 54.8
Manes.13G106550 Manihot esculenta HOM05D000002 ORTHO05D000001 3.1e-07 58.5 34 73.5
ECA240G2252 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.1e-07 58.2 44 50.0
Sopen01g013110 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-07 58.2 46 56.5
MSTRG.3250 Avicennia marina HOM05D000002 ORTHO05D000001 5.4e-07 57.8 46 58.7
CSS0043384 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.0e-07 57.4 37 64.9
ECA234G4791 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.0e-07 57.4 44 50.0
Nn7g37206 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.6e-06 56.2 30 83.3
Psat2g034080 Pisum sativum HOM05D000002 ORTHO05D000001 1.6e-06 56.2 34 61.8
Psat4g042680 Pisum sativum HOM05D000002 ORTHO05D000001 4.5e-06 54.7 31 71.0
VMungo1309G0348 Vigna mungo HOM05D001894 ORTHO05D001752 4.5e-06 54.7 43 60.5


User provided reference genes

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