Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.9e-73 277.3 151 100.0
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.9e-70 269.2 151 98.7
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.5e-64 249.6 151 93.4
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 4.6e-53 211.5 147 79.6
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.1e-51 206.8 147 78.9
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.1e-51 206.8 147 78.9
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 4.3e-51 204.9 147 79.6
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 4.3e-51 204.9 147 79.6
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 5.6e-51 204.5 149 77.9
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 9.6e-51 203.8 149 77.9
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 2.1e-50 202.6 151 77.5
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 2.1e-50 202.6 151 77.5
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 3.7e-50 201.8 147 78.2
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 6.9e-49 197.6 147 72.8
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 9.0e-49 197.2 144 74.3
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.4e-48 195.3 147 72.1
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 3.4e-48 195.3 147 73.5
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 4.5e-48 194.9 147 74.1
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 5.8e-48 194.5 146 72.6
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 3.8e-47 191.8 147 72.1
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 8.4e-47 190.7 147 72.1
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 1.9e-46 189.5 147 70.1
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 2.5e-46 189.1 147 74.8
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.5e-46 189.1 147 72.8
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 5.5e-46 188.0 147 70.1
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.2e-45 186.8 147 72.8
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.6e-45 186.4 147 69.4
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.6e-45 186.4 147 69.4
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 1.0e-44 183.7 147 70.1
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.0e-44 183.7 180 60.0
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 1.0e-44 183.7 147 69.4
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 5.1e-44 181.4 147 70.7
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 6.7e-44 181.0 147 66.7
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.9e-43 179.5 147 68.0
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.9e-43 179.5 147 68.0
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 7.4e-43 177.6 147 70.7
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 9.6e-43 177.2 147 70.1
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 9.6e-43 177.2 147 68.7
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 1.3e-42 176.8 147 67.3
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 2.1e-42 176.0 149 67.1
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.1e-42 176.0 146 65.8
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.7e-42 175.3 151 72.8
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 3.7e-42 175.3 147 67.3
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 4.8e-42 174.9 147 68.0
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 4.8e-42 174.9 146 69.2
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 6.3e-42 174.5 151 69.5
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 8.2e-42 174.1 147 67.3
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 8.2e-42 174.1 147 71.4
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 8.2e-42 174.1 146 67.8
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 1.1e-41 173.7 147 66.7
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.1e-41 173.7 147 66.7
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 1.4e-41 173.3 147 68.7
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 1.4e-41 173.3 147 67.3
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.4e-41 173.3 147 70.7
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 4.1e-41 171.8 147 67.3
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 4.1e-41 171.8 147 67.3
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 4.1e-41 171.8 147 66.0
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 4.1e-41 171.8 147 66.7
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 4.1e-41 171.8 147 65.3
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 4.1e-41 171.8 145 69.0
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 4.1e-41 171.8 147 66.0
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 4.1e-41 171.8 147 66.0
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 5.3e-41 171.4 145 64.8
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 5.3e-41 171.4 144 66.7
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 6.9e-41 171.0 147 69.4
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 9.0e-41 170.6 144 65.3
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 9.0e-41 170.6 147 67.3
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 9.0e-41 170.6 147 64.6
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 1.2e-40 170.2 147 62.6
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 1.2e-40 170.2 147 64.6
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.2e-40 170.2 135 71.1
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 1.5e-40 169.9 147 65.3
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 2.0e-40 169.5 147 67.3
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 3.4e-40 168.7 147 66.0
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 3.4e-40 168.7 147 61.2
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 3.4e-40 168.7 147 63.9
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 4.5e-40 168.3 147 66.0
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 5.9e-40 167.9 149 62.4
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 5.9e-40 167.9 147 63.3
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 1.3e-39 166.8 147 66.0
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 1.7e-39 166.4 147 65.3
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 3.8e-39 165.2 134 67.9
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 5.0e-39 164.9 147 63.3
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.9e-38 162.9 145 63.4
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 1.9e-38 162.9 147 66.0
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 2.5e-38 162.5 150 64.0
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 3.2e-38 162.2 146 64.4
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 4.2e-38 161.8 147 66.0
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.2e-38 161.8 147 66.0
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 5.5e-38 161.4 147 64.6
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 5.5e-38 161.4 147 58.5
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 7.2e-38 161.0 147 63.9
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 7.2e-38 161.0 147 62.6
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 9.3e-38 160.6 147 66.0
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.6e-37 159.8 147 64.6
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.6e-37 159.8 145 61.4
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.6e-37 159.8 145 61.4
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 2.7e-37 159.1 147 62.6
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 4.6e-37 158.3 147 62.6
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 4.6e-37 158.3 147 66.0
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 7.9e-37 157.5 141 67.4
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 7.9e-37 157.5 147 62.6
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.0e-36 157.1 144 61.8
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.3e-36 156.8 147 64.6
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 2.3e-36 156.0 147 63.9
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 3.0e-36 155.6 147 61.9
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 5.1e-36 154.8 147 59.9
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.1e-35 153.7 147 61.2
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 1.5e-35 153.3 147 61.2
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.9e-35 152.9 144 61.8
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 7.4e-35 151.0 145 60.7
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 9.7e-35 150.6 144 61.1
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 2.8e-34 149.1 126 66.7
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 4.8e-34 148.3 144 59.0
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 6.3e-34 147.9 147 59.2
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 6.3e-34 147.9 147 58.5
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 8.2e-34 147.5 147 62.6
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 8.2e-34 147.5 142 59.2
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 1.1e-33 147.1 142 59.9
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 3.1e-33 145.6 145 58.6
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.2e-32 143.7 147 58.5
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.5e-32 143.3 144 58.3
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 7.7e-32 141.0 144 59.0
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 6.5e-31 137.9 147 57.1
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 1.4e-30 136.7 140 58.6
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 5.1e-28 128.3 143 55.2
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 2.8e-26 122.5 88 70.5
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 5.3e-25 118.2 108 63.9
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 5.5e-22 108.2 156 44.2
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 7.2e-22 107.8 97 59.8
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.6e-21 106.7 81 70.4
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 7.9e-21 104.4 144 52.1
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.3e-20 102.8 126 55.6
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.8e-17 93.2 114 48.2
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 1.8e-17 93.2 81 66.7
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 1.2e-13 80.5 140 38.6
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 6.1e-13 78.2 60 73.3
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 3.0e-12 75.9 136 37.5
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.7e-12 74.7 97 49.5
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.7e-08 62.8 40 75.0


User provided reference genes

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