Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 6.8e-37 157.1 100 100.0
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 5.6e-23 110.9 62 77.4
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.6e-22 109.4 61 78.7
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.2e-20 103.2 63 73.0
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 2.6e-20 102.1 63 71.4
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 2.6e-20 102.1 65 70.8
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 2.6e-20 102.1 100 61.0
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 3.4e-20 101.7 61 75.4
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 4.5e-20 101.3 65 72.3
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 4.5e-20 101.3 65 69.2
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 7.6e-20 100.5 65 69.2
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.7e-19 99.4 66 68.2
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.2e-19 99.0 65 67.7
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.2e-19 99.0 65 67.7
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.8e-19 98.2 65 67.7
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 3.8e-19 98.2 60 71.7
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.8e-19 98.2 63 73.0
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 4.9e-19 97.8 61 70.5
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 4.9e-19 97.8 65 66.2
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 6.4e-19 97.4 61 70.5
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.9e-18 95.9 65 66.2
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 4.2e-18 94.7 63 65.1
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 9.3e-18 93.6 66 65.2
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 9.3e-18 93.6 65 60.0
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 9.3e-18 93.6 65 60.0
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.1e-17 92.4 62 67.7
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 6.0e-17 90.9 63 61.9
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.3e-16 89.7 63 66.7
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.3e-16 89.0 61 67.2
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 3.0e-16 88.6 62 69.4
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 3.9e-16 88.2 63 63.5
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 3.9e-16 88.2 66 57.6
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 3.9e-16 88.2 67 61.2
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.9e-16 88.2 67 61.2
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 6.7e-16 87.4 50 74.0
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 8.7e-16 87.0 66 60.6
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 8.7e-16 87.0 63 57.1
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 1.5e-15 86.3 67 59.7
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.5e-15 86.3 64 64.1
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.5e-15 86.3 63 63.5
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.9e-15 85.9 61 63.9
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 2.5e-15 85.5 63 60.3
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 4.3e-15 84.7 67 59.7
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.3e-15 84.7 62 59.7
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 5.6e-15 84.3 63 61.9
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 5.6e-15 84.3 63 63.5
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 5.6e-15 84.3 62 58.1
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 5.6e-15 84.3 63 57.1
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.6e-14 82.8 63 55.6
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.8e-14 82.0 61 62.3
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.7e-14 81.6 60 58.3
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 6.2e-14 80.9 62 62.9
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.4e-13 79.7 63 55.6
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 3.1e-13 78.6 66 53.0
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 4.0e-13 78.2 67 56.7
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 5.3e-13 77.8 67 55.2
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 5.3e-13 77.8 65 53.8
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 5.3e-13 77.8 63 57.1
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 6.9e-13 77.4 61 59.0
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.2e-12 76.6 58 60.3
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 1.2e-12 76.6 62 58.1
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.0e-12 75.9 66 56.1
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 2.0e-12 75.9 63 52.4
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 3.4e-12 75.1 61 57.4
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 3.4e-12 75.1 63 55.6
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 4.5e-12 74.7 60 61.7
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 4.5e-12 74.7 61 57.4
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 7.6e-12 73.9 61 55.7
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 1.0e-11 73.6 63 55.6
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.0e-11 73.6 68 48.5
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 1.3e-11 73.2 63 58.7
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 1.7e-11 72.8 64 50.0
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.7e-11 72.8 64 50.0
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.7e-11 72.8 64 56.2
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.2e-11 72.4 64 51.6
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 3.8e-11 71.6 61 62.3
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 6.5e-11 70.9 64 50.0
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 8.4e-11 70.5 60 60.0
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.9e-10 69.3 62 54.8
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 1.9e-10 69.3 63 49.2
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 1.9e-10 69.3 63 49.2
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 1.9e-10 69.3 63 49.2
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 1.9e-10 69.3 63 49.2
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 1.9e-10 69.3 63 49.2
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 4.2e-10 68.2 63 54.0
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 4.2e-10 68.2 60 58.3
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 5.5e-10 67.8 62 50.0
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 5.5e-10 67.8 65 50.8
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 7.1e-10 67.4 64 46.9
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 7.1e-10 67.4 64 46.9
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 7.1e-10 67.4 64 46.9
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 7.1e-10 67.4 65 55.4
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 7.1e-10 67.4 70 50.0
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 9.3e-10 67.0 62 50.0
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 9.3e-10 67.0 63 54.0
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.6e-09 66.2 66 47.0
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 1.6e-09 66.2 63 54.0
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 1.6e-09 66.2 63 52.4
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 1.6e-09 66.2 63 52.4
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 2.1e-09 65.9 62 50.0
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.1e-09 65.9 64 48.4
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 2.7e-09 65.5 63 49.2
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 2.7e-09 65.5 66 45.5
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.5e-09 65.1 66 45.5
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 3.5e-09 65.1 63 54.0
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 3.5e-09 65.1 63 46.0
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 3.5e-09 65.1 63 54.0
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 3.5e-09 65.1 64 46.9
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 3.5e-09 65.1 63 54.0
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 3.5e-09 65.1 63 46.0
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 4.6e-09 64.7 51 56.9
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 4.6e-09 64.7 63 54.0
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 6.0e-09 64.3 61 49.2
ClCG10G013400 Citrullus lanatus HOM05D004137 ORTHO05D004804 6.0e-09 64.3 62 56.5
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 6.0e-09 64.3 67 47.8
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 1.0e-08 63.5 61 49.2
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.0e-08 63.5 66 43.9
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 1.3e-08 63.2 63 49.2
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 1.3e-08 63.2 60 56.7
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 1.3e-08 63.2 60 56.7
MELO3C026884.2 Cucumis melo HOM05D004137 ORTHO05D004804 1.3e-08 63.2 60 51.7
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 1.8e-08 62.8 66 47.0
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 1.8e-08 62.8 63 49.2
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 1.8e-08 62.8 63 46.0
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 1.8e-08 62.8 66 47.0
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 1.8e-08 62.8 63 46.0
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.3e-08 62.4 63 49.2
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 2.3e-08 62.4 56 51.8
Prupe.7G004500 Prunus persica HOM05D004137 ORTHO05D004804 2.3e-08 62.4 60 56.7
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 3.0e-08 62.0 63 52.4
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 3.9e-08 61.6 63 46.0
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 3.9e-08 61.6 63 46.0
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 3.9e-08 61.6 63 46.0
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 6.7e-08 60.8 59 47.5
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-07 60.1 63 52.4
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 1.9e-07 59.3 102 35.3
BcaC05g29894 Brassica carinata HOM05D004137 ORTHO05D004804 2.5e-07 58.9 58 50.0
BolC5t34968H Brassica oleracea HOM05D004137 ORTHO05D004804 2.5e-07 58.9 58 50.0
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 4.3e-07 58.2 66 39.4
BcaC05g30244 Brassica carinata HOM05D004137 ORTHO05D004804 4.3e-07 58.2 58 50.0
BcaC05g30291 Brassica carinata HOM05D004137 ORTHO05D004804 4.3e-07 58.2 58 50.0
A05p43490 Brassica napus HOM05D004137 ORTHO05D004804 4.3e-07 58.2 58 50.0
BraA05t23089Z Brassica rapa HOM05D004137 ORTHO05D004804 4.3e-07 58.2 58 50.0
Carub.0003s0313 Capsella rubella HOM05D004137 ORTHO05D004804 5.7e-07 57.8 58 48.3
CiPaw.09G002200 Carya illinoinensis HOM05D004137 ORTHO05D004804 5.7e-07 57.8 53 52.8
Sed0004008 Sechium edule HOM05D004137 ORTHO05D004804 5.7e-07 57.8 60 46.7
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 5.7e-07 57.8 64 48.4
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 7.4e-07 57.4 58 48.3
Medtr7g085660 Medicago truncatula HOM05D004137 ORTHO05D004804 1.3e-06 56.6 66 47.0
FvH4_4g27600 Fragaria vesca HOM05D004137 ORTHO05D004804 1.6e-06 56.2 48 58.3
BcaB02g10824 Brassica carinata HOM05D004137 ORTHO05D004804 2.8e-06 55.5 64 45.3


User provided reference genes

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