Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017282 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D022146 7.5e-57 224.2 164 100.0
vmacro15761 Vaccinium macrocarpon HOM05D000827 ORTHO05D001576 3.0e-29 132.5 96 76.0
Actinidia11887 Actinidia chinensis HOM05D000827 ORTHO05D001576 3.3e-28 129.0 95 82.1
Actinidia39271 Actinidia chinensis HOM05D000827 ORTHO05D001576 1.6e-27 126.7 95 74.7
Dinv07406 Davidia involucrata HOM05D000827 ORTHO05D001576 1.1e-26 124.0 99 70.7
Hma1.2p1_0657F.1_g197130 Hydrangea macrophylla HOM05D000827 ORTHO05D001576 1.8e-26 123.2 104 68.3
Prupe.4G010100 Prunus persica HOM05D000827 ORTHO05D001576 1.8e-26 123.2 106 66.0
Duzib192G1053 Durio zibethinus HOM05D000827 ORTHO05D001576 4.0e-26 122.1 89 70.8
TAR627G0441 Trochodendron aralioides HOM05D000827 ORTHO05D001576 4.0e-26 122.1 100 67.0
TAR627G1209 Trochodendron aralioides HOM05D000827 ORTHO05D001576 4.0e-26 122.1 100 67.0
Duzib235G0579 Durio zibethinus HOM05D000827 ORTHO05D001576 3.4e-25 119.0 99 64.6
Haze_06935 Corylus avellana HOM05D000827 ORTHO05D001576 5.8e-25 118.2 103 74.8
GSVIVG01003340001 Vitis vinifera HOM05D000827 ORTHO05D001576 7.5e-25 117.9 99 66.7
Haze_06928 Corylus avellana HOM05D000827 ORTHO05D001576 9.9e-25 117.5 105 72.4
Dinv13968 Davidia involucrata HOM05D000827 ORTHO05D001576 9.9e-25 117.5 89 73.0
GSVIVG01003333001 Vitis vinifera HOM05D000827 ORTHO05D001576 9.9e-25 117.5 99 65.7
Ciclev10015752m.g Citrus clementina HOM05D000827 ORTHO05D001576 1.7e-24 116.7 109 68.8
Duzib160G0265 Durio zibethinus HOM05D000827 ORTHO05D001576 3.7e-24 115.5 98 65.3
Gohir.D06G216400 Gossypium hirsutum HOM05D000827 ORTHO05D001576 6.4e-24 114.8 89 68.5
Cfa000097 Carpinus fangiana HOM05D000827 ORTHO05D001576 8.3e-24 114.4 109 69.7
Gorai.010G249800 Gossypium raimondii HOM05D000827 ORTHO05D001576 8.3e-24 114.4 89 68.5
Rhsim02G0099300 Rhododendron simsii HOM05D000827 ORTHO05D001576 1.1e-23 114.0 87 71.3
Thecc.06G233700 Theobroma cacao HOM05D000827 ORTHO05D001576 1.1e-23 114.0 90 68.9
Gohir.A06G205100 Gossypium hirsutum HOM05D000827 ORTHO05D001576 1.4e-23 113.6 89 68.5
TAR626G0283 Trochodendron aralioides HOM05D000827 ORTHO05D001576 3.2e-23 112.5 100 64.0
Nn1g07395 Nelumbo nucifera HOM05D000827 ORTHO05D001576 5.4e-23 111.7 86 69.8
CiPaw.10G078100 Carya illinoinensis HOM05D000827 ORTHO05D001576 1.6e-22 110.2 102 62.7
MD05G1358100 Malus domestica HOM05D000827 ORTHO05D001576 2.1e-22 109.8 109 59.6
Sabra06G0008800 Salix brachista HOM05D000827 ORTHO05D001576 2.1e-22 109.8 119 57.1
TWI38G1318 Tripterygium wilfordii HOM05D000827 ORTHO05D001576 2.7e-22 109.4 114 63.2
TAR629G3131 Trochodendron aralioides HOM05D000827 ORTHO05D001576 2.7e-22 109.4 96 63.5
FAN21G1683 Fragaria x ananassa HOM05D000827 ORTHO05D001576 3.5e-22 109.0 93 66.7
Sc05g0009600 Simmondsia chinensis HOM05D000827 ORTHO05D001576 4.6e-22 108.6 109 64.2
FAN25G2911 Fragaria x ananassa HOM05D000827 ORTHO05D001576 7.8e-22 107.8 93 65.6
CANSAT56G2793 Cannabis sativa HOM05D000827 ORTHO05D001576 1.0e-21 107.5 106 59.4
CiPaw.09G102600 Carya illinoinensis HOM05D000827 ORTHO05D001576 1.0e-21 107.5 91 63.7
FvH4_3g00950 Fragaria vesca HOM05D000827 ORTHO05D001576 2.3e-21 106.3 113 65.5
Manes.09G076605 Manihot esculenta HOM05D000827 ORTHO05D001576 2.3e-21 106.3 121 58.7
Potri.016G013400 Populus trichocarpa HOM05D000827 ORTHO05D001576 2.3e-21 106.3 123 56.1
MD10G1332000 Malus domestica HOM05D000827 ORTHO05D001576 3.0e-21 105.9 80 72.5
Phvul.003G083900 Phaseolus vulgaris HOM05D000827 ORTHO05D001576 3.0e-21 105.9 98 63.3
Potri.006G010700 Populus trichocarpa HOM05D000827 ORTHO05D001576 3.0e-21 105.9 119 56.3
RcHm_v2.0_Chr5g0001471 Rosa chinensis HOM05D000827 ORTHO05D001576 3.0e-21 105.9 111 65.8
Sabra16G0002000 Salix brachista HOM05D000827 ORTHO05D001576 6.6e-21 104.8 122 54.9
Sabra16G0016000 Salix brachista HOM05D000827 ORTHO05D001576 6.6e-21 104.8 122 54.9
Glyma.07G265400 Glycine max HOM05D000827 ORTHO05D001576 8.6e-21 104.4 98 60.2
Gohir.D10G009000 Gossypium hirsutum HOM05D000827 ORTHO05D001576 1.1e-20 104.0 100 64.0
Gorai.011G009800 Gossypium raimondii HOM05D000827 ORTHO05D001576 1.1e-20 104.0 100 64.0
Cpa.g.sc75.114 Carica papaya HOM05D000827 ORTHO05D001576 1.5e-20 103.6 136 52.2
Glyma.17G008600 Glycine max HOM05D000827 ORTHO05D001576 1.5e-20 103.6 98 60.2
TWI63G0892 Tripterygium wilfordii HOM05D000827 ORTHO05D001576 1.5e-20 103.6 108 63.9
MSTRG.7167 Avicennia marina HOM05D000827 ORTHO05D001576 3.3e-20 102.4 104 58.7
Gohir.A10G009300 Gossypium hirsutum HOM05D000827 ORTHO05D001576 3.3e-20 102.4 100 63.0
QL05p069625 Quercus lobata HOM05D000827 ORTHO05D001576 3.3e-20 102.4 95 70.5
VMungo1215G2936 Vigna mungo HOM05D000827 ORTHO05D001576 7.3e-20 101.3 100 57.0
Oeu016819.1 Olea europaea HOM05D000827 ORTHO05D001576 8.1e-19 97.8 87 62.1
Atru.chr1.2445 Acer truncatum HOM05D000827 ORTHO05D001576 1.1e-18 97.4 121 57.9
Migut.M01398 Erythranthe guttata HOM05D000827 ORTHO05D001576 1.1e-18 97.4 94 60.6
COL.COLO4_31888 Corchorus olitorius HOM05D000827 ORTHO05D001576 1.4e-18 97.1 62 79.0
Solyc11g012290.2 Solanum lycopersicum HOM05D000827 ORTHO05D001576 1.4e-18 97.1 89 62.9
Oeu009392.1 Olea europaea HOM05D000827 ORTHO05D001576 1.8e-18 96.7 86 62.8
THA.LOC104813595 Tarenaya hassleriana HOM05D000827 ORTHO05D001576 1.8e-18 96.7 112 53.6
PGSC0003DMG400013280 Solanum tuberosum HOM05D000827 ORTHO05D001576 2.4e-18 96.3 89 61.8
THA.LOC104812994 Tarenaya hassleriana HOM05D000827 ORTHO05D001576 2.4e-18 96.3 115 53.9
arahy.Tifrunner.gnm1.ann1.0HJ3TW Arachis hypogaea HOM05D000827 ORTHO05D001576 5.2e-18 95.1 60 78.3
arahy.Tifrunner.gnm1.ann1.PC5DAD Arachis hypogaea HOM05D000827 ORTHO05D001576 5.2e-18 95.1 60 78.3
Sopen11g007070 Solanum pennellii HOM05D000827 ORTHO05D001576 5.2e-18 95.1 89 61.8
Manes.08G070900 Manihot esculenta HOM05D000827 ORTHO05D001576 6.8e-18 94.7 124 50.8
PGR042G2655 Punica granatum HOM05D000827 ORTHO05D001576 6.8e-18 94.7 102 55.9
SalBow8G2601 Salvia bowleyana HOM05D000827 ORTHO05D001576 6.8e-18 94.7 94 59.6
BraA03t14415Z Brassica rapa HOM05D000827 ORTHO05D001576 2.0e-17 93.2 114 51.8
CDE06G0687 Ceratophyllum demersum HOM05D000827 ORTHO05D001576 2.0e-17 93.2 87 59.8
Thhalv10025487m.g Eutrema salsugineum HOM05D000827 ORTHO05D001576 3.4e-17 92.4 122 48.4
BcaB03g11728 Brassica carinata HOM05D000827 ORTHO05D001576 4.4e-17 92.0 119 49.6
BcaNung02498 Brassica carinata HOM05D000827 ORTHO05D001576 1.3e-16 90.5 123 49.6
Lj4g0007136 Lotus japonicus HOM05D000827 ORTHO05D001576 1.3e-16 90.5 56 78.6
C07p51820 Brassica napus HOM05D000827 ORTHO05D001576 2.2e-16 89.7 122 49.2
BolC7t45684H Brassica oleracea HOM05D000827 ORTHO05D001576 2.2e-16 89.7 122 49.2
C03p84120 Brassica napus HOM05D000827 ORTHO05D001576 2.9e-16 89.4 105 52.4
A03p53490 Brassica napus HOM05D000827 ORTHO05D001576 3.8e-16 89.0 60 75.0
Nitab4.5_0000143g0210 Nicotiana tabacum HOM05D000827 ORTHO05D001576 3.8e-16 89.0 55 81.8
SGA_v2.0_scaffold4G01873 Striga asiatica HOM05D000827 ORTHO05D001576 3.8e-16 89.0 96 52.1
THA.LOC104806331 Tarenaya hassleriana HOM05D000827 ORTHO05D001576 3.8e-16 89.0 108 50.9
CARHR229270 Cardamine hirsuta HOM05D000827 ORTHO05D001576 4.9e-16 88.6 63 71.4
Sp7g20490 Schrenkiella parvula HOM05D000827 ORTHO05D001576 4.9e-16 88.6 122 49.2
AL7G31250 Arabidopsis lyrata HOM05D000827 ORTHO05D001576 1.1e-15 87.4 122 43.4
CDE04G0498 Ceratophyllum demersum HOM05D000827 ORTHO05D001576 1.1e-15 87.4 94 55.3
Actinidia00107 Actinidia chinensis HOM05D000827 ORTHO05D001576 1.9e-15 86.7 97 50.5
AT4G22360 Arabidopsis thaliana HOM05D000827 ORTHO05D001576 2.4e-15 86.3 63 66.7
Carub.0007s1894 Capsella rubella HOM05D000827 ORTHO05D001576 2.4e-15 86.3 56 73.2
CAN.G1186.42 Capsicum annuum HOM05D000827 ORTHO05D001576 3.2e-15 85.9 86 66.3
Oeu007168.3 Olea europaea HOM05D000827 ORTHO05D001576 5.4e-15 85.1 91 57.1
BolC3t20691H Brassica oleracea HOM05D000827 ORTHO05D001576 1.2e-14 84.0 96 53.1
BcaC01g00773 Brassica carinata HOM05D000827 ORTHO05D001576 2.1e-14 83.2 61 68.9
Rhsim06G0225300 Rhododendron simsii HOM05D000827 ORTHO05D001576 3.5e-14 82.4 91 50.5
GSVIVG01037751001 Vitis vinifera HOM05D000827 ORTHO05D001576 4.6e-14 82.0 100 56.0
A08p15670 Brassica napus HOM05D000827 ORTHO05D001576 7.8e-14 81.3 59 67.8
C01p16630 Brassica napus HOM05D000827 ORTHO05D001576 7.8e-14 81.3 79 55.7
BraA08t33547Z Brassica rapa HOM05D000827 ORTHO05D001576 7.8e-14 81.3 59 67.8
Lsat_1_v5_gn_4_62081 Lactuca sativa HOM05D000827 ORTHO05D001576 7.8e-14 81.3 91 56.0
BolC1t01610H Brassica oleracea HOM05D000827 ORTHO05D001576 1.3e-13 80.5 60 66.7
BraA01t01317Z Brassica rapa HOM05D000827 ORTHO05D001576 2.3e-13 79.7 107 47.7
Lsat_1_v5_gn_0_26921 Lactuca sativa HOM05D000827 ORTHO05D001576 2.3e-13 79.7 91 64.8
Actinidia05051 Actinidia chinensis HOM05D000827 ORTHO05D001576 3.9e-13 79.0 94 56.4
Aqoxy1G04064 Aquilegia oxysepala HOM05D000827 ORTHO05D001576 3.9e-13 79.0 84 59.5
DCAR_022598 Daucus carota HOM05D000827 ORTHO05D001576 5.1e-13 78.6 90 52.2
HanXRQChr01g0006761 Helianthus annuus HOM05D000827 ORTHO05D001576 5.1e-13 78.6 118 49.2
A01p13720 Brassica napus HOM05D000827 ORTHO05D001576 6.6e-13 78.2 107 46.7
Aa31LG6G4460 Aethionema arabicum HOM05D000827 ORTHO05D001576 1.5e-12 77.0 74 56.8
HPP92_015775 Vanilla planifolia HOM05D000827 ORTHO05D001576 3.3e-12 75.9 56 66.1
Hma1.2p1_1199F.1_g266370 Hydrangea macrophylla HOM05D000827 ORTHO05D001576 4.3e-12 75.5 94 58.5
Glyma.08G324000 Glycine max HOM05D000827 ORTHO05D001576 5.6e-12 75.1 86 46.5
Cc05_g14490 Coffea canephora HOM05D000827 ORTHO05D001576 9.6e-12 74.3 98 45.9
Hma1.2p1_0036F.1_g022970 Hydrangea macrophylla HOM05D000827 ORTHO05D001576 9.6e-12 74.3 104 47.1
CSS0043352 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001576 1.2e-11 73.9 95 57.9
RcHm_v2.0_Chr5g0056201 Rosa chinensis HOM05D000827 ORTHO05D001576 1.6e-11 73.6 89 57.3
CSS0028661 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001576 3.6e-11 72.4 123 46.3
Cfa020258 Carpinus fangiana HOM05D000827 ORTHO05D001576 1.1e-10 70.9 96 42.7
Peaxi162Scf00352g00212 Petunia axillaris HOM05D000827 ORTHO05D001576 2.4e-10 69.7 49 69.4
Phvul.006G049900 Phaseolus vulgaris HOM05D000827 ORTHO05D001576 2.4e-10 69.7 91 44.0
CSS0043851 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001576 3.1e-10 69.3 95 54.7
Migut.H01782 Erythranthe guttata HOM05D000827 ORTHO05D001576 3.1e-10 69.3 87 46.0
CiPaw.11G196600 Carya illinoinensis HOM05D000827 ORTHO05D001576 6.9e-10 68.2 91 42.9
FAN16G2407 Fragaria x ananassa HOM05D000827 ORTHO05D001576 1.5e-09 67.0 89 47.2
FAN21G2074 Fragaria x ananassa HOM05D000827 ORTHO05D001576 2.0e-09 66.6 89 47.2
FvH4_3g30330 Fragaria vesca HOM05D000827 ORTHO05D001576 2.6e-09 66.2 89 47.2
Sed0004279 Sechium edule HOM05D000827 ORTHO05D001576 2.6e-09 66.2 96 45.8
Oeu005978.1 Olea europaea HOM05D000827 ORTHO05D001576 5.8e-09 65.1 101 40.6
DCAR_016641 Daucus carota HOM05D000827 ORTHO05D001576 7.6e-09 64.7 81 46.9
FAN11G1151 Fragaria x ananassa HOM05D000827 ORTHO05D001576 9.9e-09 64.3 89 46.1
Lj1C1240G4 Lonicera japonica HOM05D000827 ORTHO05D001576 9.9e-09 64.3 44 72.7
Lj6g0021250 Lotus japonicus HOM05D000827 ORTHO05D001576 9.9e-09 64.3 91 50.5
Ca_14775_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001576 1.3e-08 63.9 101 44.6
Lj1A883T37 Lonicera japonica HOM05D000827 ORTHO05D001576 1.3e-08 63.9 99 42.4
Peaxi162Scf00235g00814 Petunia axillaris HOM05D000827 ORTHO05D001576 1.3e-08 63.9 89 41.6
EL10Ac4g07640 Beta vulgaris HOM05D000827 ORTHO05D001576 2.2e-08 63.2 63 47.6
PSO675G1846 Papaver somniferum HOM05D000827 ORTHO05D001576 2.2e-08 63.2 111 45.0
AUR62015922 Chenopodium quinoa HOM05D000827 ORTHO05D001576 2.9e-08 62.8 61 47.5
MD03G1190700 Malus domestica HOM05D000827 ORTHO05D001576 2.9e-08 62.8 98 48.0
HanXRQChr16g0516611 Helianthus annuus HOM05D000827 ORTHO05D001576 3.8e-08 62.4 63 54.0
Haze_09762 Corylus avellana HOM05D000827 ORTHO05D001576 4.9e-08 62.0 70 50.0
PGR031G0456 Punica granatum HOM05D000827 ORTHO05D001576 4.9e-08 62.0 119 37.8
ClCG09G020920 Citrullus lanatus HOM05D000827 ORTHO05D001576 6.4e-08 61.6 103 43.7
CsaV3_7G018820 Cucumis sativus L. HOM05D000827 ORTHO05D001576 6.4e-08 61.6 102 44.1
Lalb_Chr20g0116171 Lupinus albus HOM05D000827 ORTHO05D001576 6.4e-08 61.6 101 44.6
PSO541G3395 Papaver somniferum HOM05D000827 ORTHO05D001576 6.4e-08 61.6 55 54.5
Rhsim04G0015800 Rhododendron simsii HOM05D000827 ORTHO05D001576 6.4e-08 61.6 56 55.4
MELO3C013104.2 Cucumis melo HOM05D000827 ORTHO05D001576 8.4e-08 61.2 103 43.7
Oeu005502.1 Olea europaea HOM05D000827 ORTHO05D001576 8.4e-08 61.2 101 39.6
QL08p008344 Quercus lobata HOM05D000827 ORTHO05D001576 8.4e-08 61.2 111 45.0
MSTRG.13005 Avicennia marina HOM05D000827 ORTHO05D001576 1.1e-07 60.8 90 42.2
Hund01936 Selenicereus undatus HOM05D000827 ORTHO05D001576 1.1e-07 60.8 55 50.9
vmacro09679 Vaccinium macrocarpon HOM05D000827 ORTHO05D001576 1.1e-07 60.8 91 51.6
AUR62024751 Chenopodium quinoa HOM05D000827 ORTHO05D001576 1.4e-07 60.5 61 45.9
VMungo0540G1308 Vigna mungo HOM05D000827 ORTHO05D001576 1.4e-07 60.5 91 41.8
Zm00001eb433030 Zea mays HOM05D000827 ORTHO05D022146 1.9e-07 60.1 96 43.8
Psat5g172520 Pisum sativum HOM05D000827 ORTHO05D001576 2.4e-07 59.7 106 33.0
Sed0026310 Sechium edule HOM05D000827 ORTHO05D001576 3.2e-07 59.3 98 46.9
MSTRG.6970 Avicennia marina HOM05D000827 ORTHO05D001576 4.2e-07 58.9 87 40.2
Hund23157 Selenicereus undatus HOM05D000827 ORTHO05D001576 4.2e-07 58.9 55 49.1
Hund23170 Selenicereus undatus HOM05D000827 ORTHO05D001576 4.2e-07 58.9 55 49.1
ECA248G3303 Erigeron canadensis HOM05D000827 ORTHO05D001576 5.4e-07 58.5 54 57.4
SGA_v2.0_scaffold8G04384 Striga asiatica HOM05D000827 ORTHO05D001576 5.4e-07 58.5 94 42.6
CANSAT21G1963 Cannabis sativa HOM05D000827 ORTHO05D001576 7.1e-07 58.2 95 40.0
CANSAT56G2789 Cannabis sativa HOM05D000827 ORTHO05D001576 7.1e-07 58.2 95 40.0
Prupe.4G228000 Prunus persica HOM05D000827 ORTHO05D001576 7.1e-07 58.2 106 46.2
MD11G1207400 Malus domestica HOM05D000827 ORTHO05D001576 9.3e-07 57.8 102 44.1
Zm00001eb220450 Zea mays HOM05D000827 ORTHO05D022146 9.3e-07 57.8 67 53.7
Nitab4.5_0004362g0050 Nicotiana tabacum HOM05D000827 ORTHO05D001576 1.2e-06 57.4 63 46.0
Zm00001eb067200 Zea mays HOM05D000827 ORTHO05D001576 1.2e-06 57.4 65 55.4
Ah.06g181580 Amaranthus hybridus HOM05D000827 ORTHO05D001576 1.6e-06 57.0 55 47.3
Atru.chr2.3583 Acer truncatum HOM05D000827 ORTHO05D001576 3.5e-06 55.8 93 40.9
Zm00001eb046320 Zea mays HOM05D000827 ORTHO05D022146 4.6e-06 55.5 76 48.7
Migut.M01695 Erythranthe guttata HOM05D000827 ORTHO05D001576 6.0e-06 55.1 102 38.2
Nn2g13593 Nelumbo nucifera HOM05D000827 ORTHO05D022146 6.0e-06 55.1 33 81.8
Sc03g0008170 Simmondsia chinensis HOM05D000827 ORTHO05D001576 6.0e-06 55.1 59 45.8
Nitab4.5_0001160g0110 Nicotiana tabacum HOM05D000827 ORTHO05D001576 7.8e-06 54.7 63 44.4
TPR.G23595 Trifolium pratense HOM05D000827 ORTHO05D001576 7.8e-06 54.7 57 43.9


User provided reference genes

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