Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017232 Camellia sinensis var. sinensis HOM05D006626 ORTHO05D007352 5.3e-173 610.9 307 100.0
vmacro20144 Vaccinium macrocarpon HOM05D006626 ORTHO05D007352 5.2e-120 434.9 316 75.0
Lj2A96T66 Lonicera japonica HOM05D006626 ORTHO05D007352 1.7e-118 429.9 310 75.8
Actinidia26461 Actinidia chinensis HOM05D006626 ORTHO05D007352 3.5e-116 422.2 310 75.8
GSVIVG01034185001 Vitis vinifera HOM05D006626 ORTHO05D007352 7.3e-114 414.5 312 71.5
TAR623G1666 Trochodendron aralioides HOM05D006626 ORTHO05D007352 1.1e-112 410.6 310 70.3
Nn2g10382 Nelumbo nucifera HOM05D006626 ORTHO05D007352 1.3e-107 393.7 308 68.2
Rhsim05G0191600 Rhododendron simsii HOM05D006626 ORTHO05D007352 1.1e-104 384.0 301 73.1
CiPaw.09G191700 Carya illinoinensis HOM05D006626 ORTHO05D007352 3.8e-102 375.6 314 67.2
QL07p048128 Quercus lobata HOM05D006626 ORTHO05D007352 1.9e-101 373.2 318 64.8
PGSC0003DMG400008843 Solanum tuberosum HOM05D006626 ORTHO05D007352 7.1e-101 371.3 324 64.8
Sopen09g005420 Solanum pennellii HOM05D006626 ORTHO05D007352 6.6e-99 364.8 324 64.2
Solyc09g010710.4 Solanum lycopersicum HOM05D006626 ORTHO05D007352 8.7e-99 364.4 324 65.1
Atru.chr8.1962 Acer truncatum HOM05D006626 ORTHO05D007352 4.3e-98 362.1 310 66.1
Cc06_g02710 Coffea canephora HOM05D006626 ORTHO05D007352 7.3e-98 361.3 318 65.1
COL.COLO4_14816 Corchorus olitorius HOM05D006626 ORTHO05D007352 1.6e-97 360.1 317 64.7
CANSAT35G0626 Cannabis sativa HOM05D006626 ORTHO05D007352 3.6e-97 359.0 318 65.4
MD12G1140400 Malus domestica HOM05D006626 ORTHO05D007352 8.1e-97 357.8 320 63.4
Duzib093G0902 Durio zibethinus HOM05D006626 ORTHO05D007352 1.4e-96 357.1 311 66.2
PGR004G1893 Punica granatum HOM05D006626 ORTHO05D007352 4.0e-96 355.5 311 63.0
Gohir.A09G156700 Gossypium hirsutum HOM05D006626 ORTHO05D007352 5.3e-96 355.1 319 64.9
Ciclev10012389m.g Citrus clementina HOM05D006626 ORTHO05D007352 6.9e-96 354.8 314 64.0
MD04G1127200 Malus domestica HOM05D006626 ORTHO05D007352 6.9e-96 354.8 317 62.5
Thecc.05G040800 Theobroma cacao HOM05D006626 ORTHO05D007352 2.6e-95 352.8 304 64.5
Gohir.D09G152000 Gossypium hirsutum HOM05D006626 ORTHO05D007352 1.7e-94 350.1 318 64.2
Gorai.006G173400 Gossypium raimondii HOM05D006626 ORTHO05D007352 4.2e-93 345.5 314 63.7
TWI74G0730 Tripterygium wilfordii HOM05D006626 ORTHO05D007352 1.6e-92 343.6 306 65.0
Glyma.08G358600 Glycine max HOM05D006626 ORTHO05D007352 4.6e-92 342.0 307 63.5
Phvul.008G100000 Phaseolus vulgaris HOM05D006626 ORTHO05D007352 1.0e-91 340.9 310 61.0
MSTRG.19088 Avicennia marina HOM05D006626 ORTHO05D007352 1.1e-90 337.4 315 61.3
Peaxi162Scf00165g01519 Petunia axillaris HOM05D006626 ORTHO05D007352 1.1e-90 337.4 316 63.6
Migut.J00335 Erythranthe guttata HOM05D006626 ORTHO05D007352 3.3e-90 335.9 313 62.0
Medtr7g060340 Medicago truncatula HOM05D006626 ORTHO05D007352 1.3e-89 334.0 323 60.4
Sed0005156 Sechium edule HOM05D006626 ORTHO05D007352 1.8e-88 330.1 310 60.6
Aqoxy4G02911 Aquilegia oxysepala HOM05D006626 ORTHO05D007352 4.0e-88 328.9 322 59.9
Manes.09G089800 Manihot esculenta HOM05D006626 ORTHO05D007352 6.9e-88 328.2 313 61.7
FvH4_6g13970 Fragaria vesca HOM05D006626 ORTHO05D007352 1.5e-87 327.0 301 61.5
Ca_11335_v3 Cicer arietinum L. HOM05D006626 ORTHO05D007352 5.8e-87 325.1 308 59.4
FAN14G0594 Fragaria x ananassa HOM05D006626 ORTHO05D007352 5.8e-87 325.1 301 61.5
MELO3C009261.2 Cucumis melo HOM05D006626 ORTHO05D007352 7.6e-87 324.7 308 60.7
PSO339G0986 Papaver somniferum HOM05D006626 ORTHO05D007352 1.3e-86 323.9 342 57.0
FAN02G1739 Fragaria x ananassa HOM05D006626 ORTHO05D007352 1.7e-86 323.6 301 61.1
RcHm_v2.0_Chr3g0466791 Rosa chinensis HOM05D006626 ORTHO05D007352 2.2e-86 323.2 301 61.1
CsaV3_3G034930 Cucumis sativus L. HOM05D006626 ORTHO05D007352 3.8e-86 322.4 308 58.4
arahy.Tifrunner.gnm1.ann1.BMK4YH Arachis hypogaea HOM05D006626 ORTHO05D007352 1.4e-85 320.5 327 57.5
Lj1g0010963 Lotus japonicus HOM05D006626 ORTHO05D007352 1.4e-85 320.5 339 54.9
Nitab4.5_0003552g0020 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.4e-85 320.5 309 60.5
arahy.Tifrunner.gnm1.ann1.DD5A1S Arachis hypogaea HOM05D006626 ORTHO05D007352 1.9e-85 320.1 327 57.5
Lalb_Chr19g0125411 Lupinus albus HOM05D006626 ORTHO05D007352 1.9e-85 320.1 306 60.1
Sc20g0004680 Simmondsia chinensis HOM05D006626 ORTHO05D007352 1.9e-85 320.1 312 57.7
MBI14_g37824_MAGBIO Magnolia biondii HOM05D006626 ORTHO05D007352 2.4e-85 319.7 312 57.7
SGA_v2.0_scaffold126G33791 Striga asiatica HOM05D006626 ORTHO05D007352 2.4e-85 319.7 308 57.5
PSO384G0023 Papaver somniferum HOM05D006626 ORTHO05D007352 4.2e-85 318.9 338 56.5
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.1e-84 316.6 326 59.5
Oeu049236.1 Olea europaea HOM05D006626 ORTHO05D007352 3.5e-84 315.8 306 63.1
CDE09G1242 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 6.0e-84 315.1 293 59.4
CAN.G326.19 Capsicum annuum HOM05D006626 ORTHO05D007352 7.9e-84 314.7 278 64.4
VMungo1383G0921 Vigna mungo HOM05D006626 ORTHO05D007352 7.9e-84 314.7 292 61.3
FAN05G2294 Fragaria x ananassa HOM05D006626 ORTHO05D007352 3.0e-83 312.8 301 59.1
FAN09G4835 Fragaria x ananassa HOM05D006626 ORTHO05D007352 3.0e-83 312.8 301 59.1
Nitab4.5_0005449g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 6.7e-83 311.6 308 59.4
HanXRQChr04g0124851 Helianthus annuus HOM05D006626 ORTHO05D007352 8.1e-81 304.7 305 57.4
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 1.7e-78 297.0 304 60.2
Ah.08g212230 Amaranthus hybridus HOM05D006626 ORTHO05D007352 6.5e-78 295.0 311 55.6
THA.LOC104816277 Tarenaya hassleriana HOM05D006626 ORTHO05D007352 8.4e-78 294.7 324 55.9
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.9e-77 293.5 286 59.8
CARHR083840 Cardamine hirsuta HOM05D006626 ORTHO05D007352 4.2e-77 292.4 309 57.3
AT3G09430 Arabidopsis thaliana HOM05D006626 ORTHO05D007352 1.6e-76 290.4 308 56.5
Aa31LG3G1920 Aethionema arabicum HOM05D006626 ORTHO05D007352 7.9e-76 288.1 318 55.0
Thhalv10021243m.g Eutrema salsugineum HOM05D006626 ORTHO05D007352 7.9e-76 288.1 301 56.5
Peaxi162Scf00710g00212 Petunia axillaris HOM05D006626 ORTHO05D007352 7.9e-76 288.1 309 56.6
AL3G20610 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 1.0e-75 287.7 302 57.6
Carub.0003s0853 Capsella rubella HOM05D006626 ORTHO05D007352 1.3e-75 287.3 303 57.1
Aa31sc277G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 1.8e-75 287.0 311 55.3
ECA236G0397 Erigeron canadensis HOM05D006626 ORTHO05D007352 3.9e-75 285.8 309 54.7
Sp3g07800 Schrenkiella parvula HOM05D006626 ORTHO05D007352 7.4e-74 281.6 310 55.5
ATR0559G191 Amborella trichopoda HOM05D006626 ORTHO05D007352 4.8e-73 278.9 299 53.5
SHI12668 Sapria himalayana HOM05D006626 ORTHO05D007352 1.1e-72 277.7 300 54.0
BolC5t34508H Brassica oleracea HOM05D006626 ORTHO05D007352 4.5e-71 272.3 357 49.0
Lsat_1_v5_gn_8_82780 Lactuca sativa HOM05D006626 ORTHO05D007352 1.3e-70 270.8 325 52.9
Potri.006G084500 Populus trichocarpa HOM05D006626 ORTHO05D007352 3.8e-70 269.2 296 57.4
Dinv35614 Davidia involucrata HOM05D006626 ORTHO05D007352 3.2e-69 266.2 213 71.8
BraA05t22736Z Brassica rapa HOM05D006626 ORTHO05D007352 2.7e-68 263.1 305 54.1
A05p39550 Brassica napus HOM05D006626 ORTHO05D007352 6.1e-68 261.9 349 49.6
BcaC05g29673 Brassica carinata HOM05D006626 ORTHO05D007352 1.8e-67 260.4 362 48.1
C05p58580 Brassica napus HOM05D006626 ORTHO05D007352 3.3e-66 256.1 399 43.9
EL10Ac7g17297 Beta vulgaris HOM05D006626 ORTHO05D007352 4.3e-66 255.8 297 51.9
ClCG10G021100 Citrullus lanatus HOM05D006626 ORTHO05D007352 3.8e-62 242.7 308 49.7
Prupe.6G253700 Prunus persica HOM05D006626 ORTHO05D007352 4.2e-61 239.2 263 58.2
Eucgr.K03142 Eucalyptus grandis HOM05D006626 ORTHO05D007352 7.2e-61 238.4 128 88.3
AUR62040984 Chenopodium quinoa HOM05D006626 ORTHO05D007352 1.6e-52 210.7 109 86.2
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 6.7e-51 205.3 109 87.2
HPP92_012592 Vanilla planifolia HOM05D006626 ORTHO05D007352 2.0e-50 203.8 111 82.9
Os07g0695700 Oryza sativa ssp. japonica HOM05D006626 ORTHO05D007352 4.4e-50 202.6 291 45.4
Zm00001eb105220 Zea mays HOM05D006626 ORTHO05D007352 3.7e-49 199.5 301 44.9
Mapoly0001s0170 Marchantia polymorpha HOM05D006626 ORTHO05D007352 7.0e-48 195.3 155 65.8
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.5e-45 186.8 98 89.8
AUR62042106 Chenopodium quinoa HOM05D006626 ORTHO05D007352 7.2e-45 185.3 98 85.7
AagrBONN_evm.TU.Sc2ySwM_362.1793 Anthoceros agrestis HOM05D006626 ORTHO05D007352 2.3e-43 180.3 127 65.4
QL01p055053 Quercus lobata HOM05D006626 ORTHO05D007352 5.2e-43 179.1 98 84.7
Hund12078 Selenicereus undatus HOM05D006626 ORTHO05D007352 6.3e-41 172.2 94 81.9
QL93p0107_0195 Quercus lobata HOM05D006626 ORTHO05D007352 1.1e-40 171.4 130 71.5
CBR_g84850 Chara braunii HOM05D006626 ORTHO05D007352 1.2e-39 167.9 138 60.1
Psat3g141480 Pisum sativum HOM05D006626 ORTHO05D007352 3.2e-37 159.8 213 49.8
Atru.chr11.672 Acer truncatum HOM05D006626 ORTHO05D007352 1.2e-36 157.9 98 78.6
Cpa.g.sc188.15 Carica papaya HOM05D006626 ORTHO05D007352 1.2e-36 157.9 234 50.4
Haze_20773 Corylus avellana HOM05D003752 ORTHO05D004537 1.6e-36 157.5 247 43.7
SEGI_14743 Sequoiadendron giganteum HOM05D006626 ORTHO05D007352 4.7e-36 156.0 98 73.5
Nitab4.5_0027058g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.0e-31 140.6 207 50.7
AL614U10010 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 4.9e-25 119.4 214 44.4
AUR62042107 Chenopodium quinoa HOM05D006626 ORTHO05D007352 4.3e-21 106.3 194 43.3
CDE02G2228 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 4.7e-20 102.8 129 45.7
AUR62040983 Chenopodium quinoa HOM05D006626 ORTHO05D007352 8.3e-17 92.0 194 39.7
MD05G1218700 Malus domestica HOM05D006626 ORTHO05D007352 3.2e-16 90.1 108 55.6
MD16G1182100 Malus domestica HOM05D006626 ORTHO05D007352 3.2e-16 90.1 108 55.6
MD02G1131100 Malus domestica HOM05D006626 ORTHO05D007352 5.4e-16 89.4 108 55.6
MD15G1437500 Malus domestica HOM05D006626 ORTHO05D007352 7.0e-16 89.0 108 54.6
Aa31sc161G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 5.9e-15 85.9 207 38.6
SGA_v2.0_scaffold18G08259 Striga asiatica HOM05D006626 ORTHO05D007352 3.9e-14 83.2 82 56.1
QL01p053860 Quercus lobata HOM05D006626 ORTHO05D007352 1.2e-12 78.2 41 87.8
arahy.Tifrunner.gnm1.ann1.9RDP1W Arachis hypogaea HOM05D003961 ORTHO05D007352 1.2e-10 71.6 113 45.1
TAR633G2221 Trochodendron aralioides HOM05D006626 ORTHO05D007352 2.2e-09 67.4 44 70.5
arahy.Tifrunner.gnm1.ann1.MM579M Arachis hypogaea HOM05D001890 ORTHO05D003442 4.1e-08 63.2 114 40.4


User provided reference genes

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