Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 9.8e-65 250.0 126 100.0
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 1.2e-46 189.9 132 75.0
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 1.2e-46 189.9 132 75.0
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 1.9e-44 182.6 121 79.3
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 3.3e-44 181.8 127 78.7
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 5.1e-37 157.9 137 66.4
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.1e-36 156.8 134 65.7
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 4.3e-36 154.8 137 64.2
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 4.0e-34 148.3 125 70.4
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 7.6e-33 144.1 134 64.9
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 2.9e-32 142.1 123 65.9
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 6.4e-32 141.0 134 63.4
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 1.4e-31 139.8 130 62.3
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 2.4e-31 139.0 145 55.2
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 4.1e-31 138.3 142 57.7
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 4.1e-31 138.3 129 63.6
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 7.1e-31 137.5 133 60.9
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 7.1e-31 137.5 133 60.9
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 1.2e-30 136.7 140 55.7
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.6e-30 136.3 130 60.8
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 2.1e-30 136.0 127 59.1
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 2.1e-30 136.0 124 62.1
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 4.6e-30 134.8 133 61.7
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 1.0e-29 133.7 143 55.2
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.3e-29 133.3 130 60.0
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 1.3e-29 133.3 143 57.3
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.7e-29 132.9 130 60.0
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.3e-29 132.5 130 59.2
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 3.6e-27 125.2 131 56.5
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.4e-26 123.2 131 57.3
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 1.8e-26 122.9 139 52.5
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 2.4e-26 122.5 141 52.5
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 4.0e-26 121.7 135 54.8
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 6.8e-26 120.9 136 55.1
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 2.6e-25 119.0 138 53.6
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 3.4e-25 118.6 128 57.8
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 4.4e-25 118.2 133 53.4
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 2.9e-24 115.5 129 51.9
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 2.9e-24 115.5 140 55.7
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 4.9e-24 114.8 133 54.9
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 1.9e-23 112.8 138 50.0
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 3.2e-23 112.1 139 53.2
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 5.4e-23 111.3 115 57.4
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 5.4e-23 111.3 112 56.2
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 7.1e-23 110.9 127 51.2
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 2.1e-22 109.4 123 52.8
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 2.7e-22 109.0 112 56.2
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 3.5e-22 108.6 136 50.7
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 6.0e-22 107.8 123 51.2
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 6.0e-22 107.8 129 52.7
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 7.8e-22 107.5 123 49.6
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 1.0e-21 107.1 129 52.7
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.3e-21 106.7 123 50.4
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 1.3e-21 106.7 123 51.2
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 3.9e-21 105.1 140 49.3
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 6.6e-21 104.4 138 52.2
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 8.7e-21 104.0 115 51.3
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 4.3e-20 101.7 112 50.0
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 7.3e-20 100.9 123 48.8
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 9.6e-20 100.5 128 45.3
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 1.3e-19 100.1 131 48.1
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 4.8e-19 98.2 122 47.5
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 4.8e-19 98.2 122 47.5
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 8.1e-19 97.4 124 46.8
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 1.4e-18 96.7 132 44.7
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 3.1e-18 95.5 124 51.6
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 9.0e-18 94.0 132 46.2
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 9.0e-18 94.0 115 48.7
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 9.0e-18 94.0 115 48.7
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 1.5e-17 93.2 120 47.5
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 2.0e-17 92.8 128 49.2
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 2.6e-17 92.4 115 52.2
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 7.6e-17 90.9 120 45.8
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 7.6e-17 90.9 132 43.9
CDE01G0169 Ceratophyllum demersum HOM05D001264 ORTHO05D001167 3.2e-15 85.5 128 47.7
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 1.6e-14 83.2 119 43.7
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 2.1e-14 82.8 124 46.8
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 1.7e-13 79.7 123 39.0
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 1.7e-13 79.7 92 48.9
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 1.7e-13 79.7 130 39.2
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 3.0e-13 79.0 98 54.1
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 3.0e-13 79.0 111 50.5
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 3.0e-13 79.0 129 42.6
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.1e-13 78.2 133 39.1
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.5e-12 76.6 133 38.3
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 4.3e-12 75.1 107 41.1
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 4.3e-12 75.1 107 40.2
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 7.4e-12 74.3 133 37.6
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 1.3e-11 73.6 102 44.1
Migut.H01572 Erythranthe guttata HOM05D011575 ORTHO05D004912 4.8e-11 71.6 83 47.0
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 8.1e-11 70.9 92 51.1
Zm00001eb273730 Zea mays HOM05D007398 ORTHO05D004912 1.1e-10 70.5 140 41.4
ClCG03G014620 Citrullus lanatus HOM05D032147 ORTHO05D034646 3.1e-10 68.9 105 42.9
Haze_06802 Corylus avellana HOM05D061810 ORTHO05D004912 5.3e-10 68.2 86 50.0
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 5.3e-10 68.2 120 41.7
ATR0794G061 Amborella trichopoda HOM05D007398 ORTHO05D004912 6.9e-10 67.8 139 33.8
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 6.9e-10 67.8 92 45.7
Sc16g0005970 Simmondsia chinensis HOM05D007398 ORTHO05D004912 6.9e-10 67.8 132 40.9
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 6.9e-10 67.8 112 45.5
Ah.04g165930 Amaranthus hybridus HOM05D007398 ORTHO05D004912 9.0e-10 67.4 125 44.0
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 9.0e-10 67.4 123 41.5
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 1.2e-09 67.0 126 41.3
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.2e-09 67.0 126 39.7
MSTRG.7209 Avicennia marina HOM05D011575 ORTHO05D004912 1.5e-09 66.6 101 40.6
Migut.M01320 Erythranthe guttata HOM05D011575 ORTHO05D004912 1.5e-09 66.6 87 44.8
SEGI_01426 Sequoiadendron giganteum HOM05D007398 ORTHO05D004912 1.5e-09 66.6 104 45.2
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 2.6e-09 65.9 117 40.2
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 3.4e-09 65.5 104 42.3
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 4.5e-09 65.1 101 44.6
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 5.8e-09 64.7 108 40.7
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 7.6e-09 64.3 88 50.0
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 9.9e-09 63.9 126 39.7
AUR62015784 Chenopodium quinoa HOM05D007398 ORTHO05D004912 1.3e-08 63.5 111 40.5
Zm00001eb431260 Zea mays HOM05D007398 ORTHO05D004912 1.3e-08 63.5 141 34.0
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.7e-08 63.2 122 40.2
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 2.2e-08 62.8 102 39.2
SalBow8G3401 Salvia bowleyana HOM05D011575 ORTHO05D004912 2.2e-08 62.8 105 40.0
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 2.9e-08 62.4 106 41.5
Zm00001eb207520 Zea mays HOM05D067159 ORTHO05D050012 2.9e-08 62.4 84 44.0
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 3.8e-08 62.0 101 37.6
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 3.8e-08 62.0 102 38.2
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 3.8e-08 62.0 100 40.0
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 4.9e-08 61.6 121 36.4
SGA_v2.0_scaffold4G01914 Striga asiatica HOM05D011575 ORTHO05D004912 6.4e-08 61.2 84 41.7
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 8.4e-08 60.8 123 38.2
Oeu002741.1 Olea europaea HOM05D011575 ORTHO05D004912 8.4e-08 60.8 89 40.4
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 1.1e-07 60.5 123 38.2
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 1.1e-07 60.5 123 38.2
Medtr8g468960 Medicago truncatula HOM05D011727 ORTHO05D004912 1.1e-07 60.5 78 46.2
unitig_0.g942 Utricularia gibba HOM05D011575 ORTHO05D004912 1.1e-07 60.5 85 41.2
SGA_v2.0_scaffold7G03838 Striga asiatica HOM05D011575 ORTHO05D004912 1.4e-07 60.1 87 42.5
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 2.4e-07 59.3 117 39.3
VMungo0647G2151 Vigna mungo HOM05D011727 ORTHO05D004912 2.4e-07 59.3 95 41.1
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 4.2e-07 58.5 122 35.2
AUR62020433 Chenopodium quinoa HOM05D007398 ORTHO05D004912 4.2e-07 58.5 111 38.7
Zm00001eb070220 Zea mays HOM05D007398 ORTHO05D004912 4.2e-07 58.5 131 35.9
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 7.1e-07 57.8 106 40.6
unitig_744.g24521 Utricularia gibba HOM05D011575 ORTHO05D004912 7.1e-07 57.8 96 39.6
A08p20650 Brassica napus HOM05D009587 ORTHO05D004912 9.3e-07 57.4 127 39.4
Os04g0624701 Oryza sativa ssp. japonica HOM05D007398 ORTHO05D004912 1.2e-06 57.0 121 37.2
PGSC0003DMG400016451 Solanum tuberosum HOM05D011575 ORTHO05D004912 1.2e-06 57.0 97 39.2
PGSC0003DMG400016452 Solanum tuberosum HOM05D011575 ORTHO05D004912 1.6e-06 56.6 101 36.6
RcHm_v2.0_Chr5g0002951 Rosa chinensis HOM05D011727 ORTHO05D004912 4.6e-06 55.1 94 44.7
Glyma.14G163600 Glycine max HOM05D011727 ORTHO05D004912 6.0e-06 54.7 83 45.8
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 7.9e-06 54.3 95 41.1


User provided reference genes

Program Settings