Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017170 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.8e-31 138.7 73 100.0
Rhsim03G0214200 Rhododendron simsii HOM05D006482 ORTHO05D008149 2.2e-24 115.2 73 76.7
TAR374G1512 Trochodendron aralioides HOM05D006482 ORTHO05D008149 4.1e-23 110.9 73 79.5
GSVIVG01038627001 Vitis vinifera HOM05D006482 ORTHO05D008149 4.1e-23 110.9 73 78.1
MD01G1227400 Malus domestica HOM05D006482 ORTHO05D008149 2.7e-22 108.2 73 76.7
PGR142G0199 Punica granatum HOM05D006482 ORTHO05D008149 5.9e-22 107.1 73 74.0
RcHm_v2.0_Chr1g0382671 Rosa chinensis HOM05D006482 ORTHO05D008149 2.9e-21 104.8 73 74.0
Nn3g18841 Nelumbo nucifera HOM05D006482 ORTHO05D008149 3.8e-21 104.4 73 76.7
Prupe.2G317400 Prunus persica HOM05D006482 ORTHO05D008149 3.8e-21 104.4 73 72.6
CANSAT21G0227 Cannabis sativa HOM05D006482 ORTHO05D008149 5.0e-21 104.0 73 74.0
QL05p036199 Quercus lobata HOM05D006482 ORTHO05D008149 6.6e-21 103.6 72 75.0
FvH4_7g32700 Fragaria vesca HOM05D006482 ORTHO05D008149 8.6e-21 103.2 73 72.6
FAN01G3112 Fragaria x ananassa HOM05D006482 ORTHO05D008149 8.6e-21 103.2 73 72.6
FAN03G2872 Fragaria x ananassa HOM05D006482 ORTHO05D008149 8.6e-21 103.2 73 72.6
PSO063G1999 Papaver somniferum HOM05D006482 ORTHO05D008149 8.6e-21 103.2 73 72.6
vmacro06428 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 8.6e-21 103.2 73 71.2
Nitab4.5_0008141g0050 Nicotiana tabacum HOM05D006482 ORTHO05D008149 1.5e-20 102.4 72 72.2
Manes.01G041500 Manihot esculenta HOM05D006482 ORTHO05D008149 3.3e-20 101.3 73 71.2
arahy.Tifrunner.gnm1.ann1.ZIU4UI Arachis hypogaea HOM05D006482 ORTHO05D008149 4.2e-20 100.9 73 71.2
Dinv18742 Davidia involucrata HOM05D006482 ORTHO05D008149 5.5e-20 100.5 66 77.3
Dinv29224 Davidia involucrata HOM05D006482 ORTHO05D008149 5.5e-20 100.5 65 75.4
TWI39G0373 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 5.5e-20 100.5 73 69.9
TAR629G1047 Trochodendron aralioides HOM05D006482 ORTHO05D008149 5.5e-20 100.5 73 72.6
arahy.Tifrunner.gnm1.ann1.CVH3M3 Arachis hypogaea HOM05D006482 ORTHO05D008149 7.2e-20 100.1 73 71.2
Atru.chr12.2369 Acer truncatum HOM05D006482 ORTHO05D008149 1.6e-19 99.0 73 71.2
Lj1g0026941 Lotus japonicus HOM05D006482 ORTHO05D008149 1.6e-19 99.0 73 69.9
Oeu010737.1 Olea europaea HOM05D006482 ORTHO05D008149 1.6e-19 99.0 73 67.1
Actinidia27284 Actinidia chinensis HOM05D000567 ORTHO05D000767 2.1e-19 98.6 73 71.2
PGSC0003DMG400012236 Solanum tuberosum HOM05D006482 ORTHO05D008149 2.8e-19 98.2 73 69.9
Eucgr.K00422 Eucalyptus grandis HOM05D006482 ORTHO05D008149 3.6e-19 97.8 73 71.2
Thecc.03G206900 Theobroma cacao HOM05D006482 ORTHO05D008149 3.6e-19 97.8 73 68.5
Nitab4.5_0002720g0020 Nicotiana tabacum HOM05D006482 ORTHO05D008149 6.1e-19 97.1 70 70.0
Potri.012G022900 Populus trichocarpa HOM05D006482 ORTHO05D008149 6.1e-19 97.1 73 67.1
Potri.015G006500 Populus trichocarpa HOM05D006482 ORTHO05D008149 6.1e-19 97.1 73 67.1
Glyma.04G230700 Glycine max HOM05D006482 ORTHO05D008149 1.0e-18 96.3 73 65.8
Lalb_Chr23g0271851 Lupinus albus HOM05D006482 ORTHO05D008149 1.0e-18 96.3 73 68.5
EL10Ac3g05199 Beta vulgaris HOM05D006482 ORTHO05D008149 1.4e-18 95.9 73 69.9
CSS0001288 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.4e-18 95.9 73 69.9
Lsat_1_v5_gn_6_10060 Lactuca sativa HOM05D006482 ORTHO05D008149 1.4e-18 95.9 73 69.9
Phvul.009G047100 Phaseolus vulgaris HOM05D006482 ORTHO05D008149 1.4e-18 95.9 73 67.1
CiPaw.05G203100 Carya illinoinensis HOM05D006482 ORTHO05D008149 1.8e-18 95.5 73 68.5
ECA233G2670 Erigeron canadensis HOM05D006482 ORTHO05D008149 1.8e-18 95.5 73 68.5
Hma1.2p1_0456F.1_g156710 Hydrangea macrophylla HOM05D006482 ORTHO05D008149 1.8e-18 95.5 73 71.2
Sabra15G0004500 Salix brachista HOM05D006482 ORTHO05D008149 1.8e-18 95.5 73 65.8
TWI14G0741 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 2.3e-18 95.1 68 69.1
Gohir.A08G103900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 4.0e-18 94.4 73 68.5
Sopen08g031390 Solanum pennellii HOM05D006482 ORTHO05D008149 5.2e-18 94.0 73 65.8
COL.COLO4_14353 Corchorus olitorius HOM05D006482 ORTHO05D008149 6.8e-18 93.6 73 65.8
Psat5g073480 Pisum sativum HOM05D006482 ORTHO05D008149 6.8e-18 93.6 73 65.8
Solyc08g083200.3 Solanum lycopersicum HOM05D006482 ORTHO05D008149 6.8e-18 93.6 73 65.8
Duzib205G0332 Durio zibethinus HOM05D006482 ORTHO05D008149 8.9e-18 93.2 73 67.1
HanXRQChr07g0192381 Helianthus annuus HOM05D006482 ORTHO05D008149 8.9e-18 93.2 73 67.1
Lalb_Chr11g0067291 Lupinus albus HOM05D006482 ORTHO05D008149 8.9e-18 93.2 72 65.3
Gohir.D08G115300 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.2e-17 92.8 73 67.1
Gorai.004G124200 Gossypium raimondii HOM05D006482 ORTHO05D008149 1.2e-17 92.8 73 67.1
MD07G1297700 Malus domestica HOM05D006482 ORTHO05D008149 1.2e-17 92.8 99 55.6
Hund21041 Selenicereus undatus HOM05D006482 ORTHO05D008149 1.2e-17 92.8 77 67.5
CSS0049934 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.5e-17 92.4 73 68.5
Ah.13g070630 Amaranthus hybridus HOM05D006482 ORTHO05D008149 2.0e-17 92.0 74 67.6
Ciclev10023193m.g Citrus clementina HOM05D006482 ORTHO05D008149 2.0e-17 92.0 73 67.1
Migut.E00300 Erythranthe guttata HOM05D006482 ORTHO05D008149 2.0e-17 92.0 74 68.9
Medtr3g092270 Medicago truncatula HOM05D006482 ORTHO05D008149 2.0e-17 92.0 66 69.7
CiPaw.06G042200 Carya illinoinensis HOM05D006482 ORTHO05D008149 2.6e-17 91.7 73 63.0
Peaxi162Scf00074g00224 Petunia axillaris HOM05D006482 ORTHO05D008149 4.4e-17 90.9 73 67.1
TPR.G14847 Trifolium pratense HOM05D006482 ORTHO05D008149 5.7e-17 90.5 65 67.7
Glyma.04G154600 Glycine max HOM05D006482 ORTHO05D008149 9.8e-17 89.7 69 65.2
Sed0025475 Sechium edule HOM05D006482 ORTHO05D008149 9.8e-17 89.7 73 63.0
Aa31LG3G9780 Aethionema arabicum HOM05D006482 ORTHO05D008149 1.7e-16 89.0 73 63.0
Gorai.008G265700 Gossypium raimondii HOM05D006482 ORTHO05D008149 2.2e-16 88.6 73 64.4
Hund09702 Selenicereus undatus HOM05D006482 ORTHO05D008149 2.8e-16 88.2 73 61.6
A03p15030 Brassica napus HOM05D006482 ORTHO05D008149 3.7e-16 87.8 64 68.8
BraA03t10797Z Brassica rapa HOM05D006482 ORTHO05D008149 3.7e-16 87.8 64 68.8
AL8G28600 Arabidopsis lyrata HOM05D006482 ORTHO05D008149 4.9e-16 87.4 73 61.6
Carub.0008s1398 Capsella rubella HOM05D006482 ORTHO05D008149 4.9e-16 87.4 73 61.6
CsaV3_5G000030 Cucumis sativus L. HOM05D006482 ORTHO05D008149 4.9e-16 87.4 73 63.0
Sc13g0010170 Simmondsia chinensis HOM05D006482 ORTHO05D008149 4.9e-16 87.4 73 61.6
CSS0015195 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 6.3e-16 87.0 73 68.5
MELO3C005924.2 Cucumis melo HOM05D006482 ORTHO05D008149 8.3e-16 86.7 73 61.6
C03p17520 Brassica napus HOM05D006482 ORTHO05D008149 1.1e-15 86.3 64 67.2
BolC3t14165H Brassica oleracea HOM05D006482 ORTHO05D008149 1.1e-15 86.3 64 67.2
ClCG01G000130 Citrullus lanatus HOM05D006482 ORTHO05D008149 1.1e-15 86.3 73 58.9
Thhalv10015198m.g Eutrema salsugineum HOM05D006482 ORTHO05D008149 1.1e-15 86.3 73 60.3
Sp6g15770 Schrenkiella parvula HOM05D006482 ORTHO05D008149 1.1e-15 86.3 73 60.3
AT5G53650 Arabidopsis thaliana HOM05D006482 ORTHO05D008149 1.4e-15 85.9 73 60.3
SalBow3G2365 Salvia bowleyana HOM05D006482 ORTHO05D008149 1.4e-15 85.9 74 64.9
BcaC01g06263 Brassica carinata HOM05D006482 ORTHO05D008149 1.8e-15 85.5 64 67.2
Sc19g0000660 Simmondsia chinensis HOM05D006482 ORTHO05D008149 1.8e-15 85.5 63 69.8
THA.LOC109117152 Tarenaya hassleriana HOM05D006482 ORTHO05D008149 1.8e-15 85.5 69 65.2
CARHR266810 Cardamine hirsuta HOM05D006482 ORTHO05D008149 2.4e-15 85.1 73 58.9
BcaB01g04252 Brassica carinata HOM05D006482 ORTHO05D008149 3.2e-15 84.7 64 65.6
CDE09G1364 Ceratophyllum demersum HOM05D001294 ORTHO05D001178 4.1e-15 84.3 69 62.3
Cc08_g16820 Coffea canephora HOM05D006482 ORTHO05D008149 5.4e-15 84.0 71 63.4
Gohir.A12G246900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 5.4e-15 84.0 73 60.3
A02p10930 Brassica napus HOM05D006482 ORTHO05D008149 7.0e-15 83.6 66 63.6
CSS0018303 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.2e-14 82.8 46 91.3
Duzib068G1219 Durio zibethinus HOM05D006482 ORTHO05D008149 1.2e-14 82.8 88 55.7
BraA02t06158Z Brassica rapa HOM05D006482 ORTHO05D008149 2.0e-14 82.0 64 64.1
CSS0007382 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 2.0e-14 82.0 66 72.7
Glyma.06G134500 Glycine max HOM05D006482 ORTHO05D008149 2.0e-14 82.0 73 58.9
BcaB05g22064 Brassica carinata HOM05D006482 ORTHO05D008149 2.7e-14 81.6 64 64.1
BcaC03g14399 Brassica carinata HOM05D006482 ORTHO05D008149 7.8e-14 80.1 64 62.5
C02p18140 Brassica napus HOM05D006482 ORTHO05D008149 7.8e-14 80.1 64 62.5
BolC2t07944H Brassica oleracea HOM05D006482 ORTHO05D008149 7.8e-14 80.1 64 62.5
unitig_699.g19497 Utricularia gibba HOM05D006482 ORTHO05D008149 1.0e-13 79.7 70 58.6
AUR62035606 Chenopodium quinoa HOM05D006482 ORTHO05D008149 2.3e-13 78.6 96 51.0
SEGI_31465 Sequoiadendron giganteum HOM05D006482 ORTHO05D008149 2.9e-13 78.2 65 63.1
Sed0001965 Sechium edule HOM05D006482 ORTHO05D008149 6.6e-13 77.0 66 59.1
Duzib084G1447 Durio zibethinus HOM05D006482 ORTHO05D008149 7.3e-12 73.6 63 60.3
QL09p007382 Quercus lobata HOM05D006482 ORTHO05D008149 1.6e-11 72.4 142 38.0
Gohir.D12G247600 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.4e-10 69.3 73 56.2
Eucgr.E02459 Eucalyptus grandis HOM05D006482 ORTHO05D008149 4.0e-10 67.8 55 61.8
Sabra12G0010900 Salix brachista HOM05D006482 ORTHO05D008149 5.2e-10 67.4 132 35.6
Os05g0535700 Oryza sativa ssp. japonica HOM05D006482 ORTHO05D008149 6.8e-10 67.0 72 50.0
vmacro13845 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 6.8e-10 67.0 45 73.3
FAN17G0467 Fragaria x ananassa HOM05D006482 ORTHO05D008149 1.2e-09 66.2 43 72.1
HPP92_020659 Vanilla planifolia HOM05D001695 ORTHO05D002735 1.2e-09 66.2 76 50.0
Haze_00279 Corylus avellana HOM05D006482 ORTHO05D008149 1.5e-09 65.9 41 78.0
AUR62006020 Chenopodium quinoa HOM05D006482 ORTHO05D008149 2.0e-09 65.5 42 73.8
CDE11G0870 Ceratophyllum demersum HOM05D006482 ORTHO05D008149 3.4e-09 64.7 103 42.7
ATR0579G147 Amborella trichopoda HOM05D006482 ORTHO05D008149 1.7e-08 62.4 42 66.7
Rhsim07G0077300 Rhododendron simsii HOM05D006482 ORTHO05D008149 2.9e-08 61.6 42 71.4
DCAR_006554 Daucus carota HOM05D006482 ORTHO05D008149 7.0e-07 57.0 41 68.3
FvH4_4g29090 Fragaria vesca HOM05D000768 ORTHO05D046510 6.0e-06 53.9 48 60.4


User provided reference genes

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