Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.7e-44 180.6 99 100.0
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.1e-42 174.5 99 96.0
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.0e-41 172.2 100 97.0
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 8.3e-19 97.1 94 59.6
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 5.4e-18 94.4 73 67.1
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.0e-18 94.0 94 61.7
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.2e-17 93.2 72 68.1
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 1.6e-17 92.8 75 68.0
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.6e-17 92.8 75 66.7
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.0e-17 92.4 93 57.0
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.7e-17 92.0 88 63.6
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 4.6e-17 91.3 76 65.8
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 6.0e-17 90.9 75 68.0
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 7.8e-17 90.5 88 62.5
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 7.8e-17 90.5 88 61.4
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.0e-16 90.1 94 58.5
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.0e-16 90.1 71 70.4
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.3e-16 89.7 87 62.1
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 3.0e-16 88.6 75 66.7
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 3.0e-16 88.6 95 60.0
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.9e-16 88.2 71 73.2
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 5.0e-16 87.8 91 53.8
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 5.0e-16 87.8 91 53.8
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 8.6e-16 87.0 75 65.3
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 1.1e-15 86.7 71 70.4
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.1e-15 86.7 74 64.9
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.5e-15 86.3 72 69.4
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.5e-15 86.3 75 65.3
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.5e-15 86.3 74 64.9
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.5e-15 86.3 78 61.5
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 3.3e-15 85.1 88 56.8
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 3.3e-15 85.1 83 59.0
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 3.3e-15 85.1 76 61.8
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 3.3e-15 85.1 89 56.2
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 3.3e-15 85.1 73 67.1
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 4.3e-15 84.7 67 71.6
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 4.3e-15 84.7 67 71.6
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 4.3e-15 84.7 74 66.2
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 5.6e-15 84.3 85 61.2
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 5.6e-15 84.3 70 71.4
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 5.6e-15 84.3 96 56.2
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 7.3e-15 84.0 81 58.0
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 9.5e-15 83.6 72 65.3
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 1.2e-14 83.2 77 62.3
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.2e-14 83.2 78 59.0
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.2e-14 83.2 66 71.2
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 2.1e-14 82.4 78 62.8
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 2.1e-14 82.4 72 63.9
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 2.1e-14 82.4 71 66.2
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 2.8e-14 82.0 67 62.7
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 2.8e-14 82.0 65 72.3
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.8e-14 82.0 87 60.9
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 2.8e-14 82.0 89 57.3
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.8e-14 82.0 72 63.9
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 3.6e-14 81.6 70 62.9
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 3.6e-14 81.6 79 58.2
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 3.6e-14 81.6 84 59.5
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 3.6e-14 81.6 95 56.8
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 3.6e-14 81.6 71 66.2
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 4.7e-14 81.3 73 61.6
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 4.7e-14 81.3 82 59.8
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 4.7e-14 81.3 96 56.2
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 4.7e-14 81.3 76 64.5
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.7e-14 81.3 65 70.8
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 4.7e-14 81.3 65 72.3
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 6.2e-14 80.9 74 63.5
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 6.2e-14 80.9 74 63.5
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 6.2e-14 80.9 74 63.5
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 6.2e-14 80.9 74 63.5
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 6.2e-14 80.9 74 63.5
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 6.2e-14 80.9 71 62.0
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 6.2e-14 80.9 95 54.7
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 6.2e-14 80.9 65 70.8
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 6.2e-14 80.9 65 70.8
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 8.1e-14 80.5 79 59.5
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.1e-13 80.1 76 57.9
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.1e-13 80.1 86 59.3
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 1.4e-13 79.7 75 62.7
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 1.4e-13 79.7 95 56.8
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.4e-13 79.7 72 65.3
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.4e-13 79.7 74 62.2
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 2.3e-13 79.0 74 60.8
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 2.3e-13 79.0 89 50.6
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 3.1e-13 78.6 78 55.1
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 4.0e-13 78.2 76 59.2
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 5.2e-13 77.8 82 57.3
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 5.2e-13 77.8 91 51.6
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 6.8e-13 77.4 75 64.0
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 6.8e-13 77.4 71 63.4
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 8.9e-13 77.0 72 63.9
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.2e-12 76.6 74 59.5
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-12 76.6 94 50.0
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-12 76.6 71 60.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 1.5e-12 76.3 73 60.3
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.5e-12 76.3 94 52.1
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 2.0e-12 75.9 89 55.1
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 2.0e-12 75.9 89 55.1
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.0e-12 75.9 77 59.7
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.6e-12 75.5 74 58.1
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.6e-12 75.5 73 63.0
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.4e-12 75.1 91 53.8
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 5.8e-12 74.3 60 71.7
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 5.8e-12 74.3 66 62.1
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 5.8e-12 74.3 67 65.7
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 7.5e-12 73.9 72 65.3
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 9.9e-12 73.6 86 54.7
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.3e-11 73.2 73 57.5
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.7e-11 72.8 78 59.0
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.2e-11 72.4 74 55.4
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.2e-11 72.4 91 52.7
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.2e-11 72.4 78 62.8
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.2e-11 72.4 74 58.1
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.9e-11 72.0 77 59.7
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.9e-11 72.0 77 59.7
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 3.7e-11 71.6 67 62.7
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 3.7e-11 71.6 80 55.0
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.9e-11 71.2 66 63.6
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 6.4e-11 70.9 70 54.3
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 8.3e-11 70.5 71 54.9
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 8.3e-11 70.5 65 60.0
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 8.3e-11 70.5 70 55.7
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 1.1e-10 70.1 77 54.5
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 1.1e-10 70.1 77 54.5
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.4e-10 69.7 69 59.4
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 1.9e-10 69.3 78 53.8
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.4e-10 68.9 66 65.2
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 4.1e-10 68.2 61 65.6
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 5.4e-10 67.8 70 55.7
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 7.1e-10 67.4 67 55.2
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.6e-09 66.2 74 52.7
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 2.1e-09 65.9 84 48.8
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 2.7e-09 65.5 72 52.8
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 3.5e-09 65.1 55 60.0
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.5e-09 65.1 81 51.9
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 7.8e-09 63.9 84 47.6
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 7.8e-09 63.9 66 51.5
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 1.0e-08 63.5 72 54.2
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 1.7e-08 62.8 73 56.2
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.7e-08 62.8 63 58.7
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 2.3e-08 62.4 90 43.3
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.9e-08 61.6 79 51.9
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 5.1e-08 61.2 76 46.1
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 6.6e-08 60.8 67 49.3
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 8.6e-08 60.5 72 52.8
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 8.6e-08 60.5 71 53.5
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.5e-07 59.7 64 54.7
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 1.5e-07 59.7 80 46.2
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 4.3e-07 58.2 84 42.9
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.2e-06 56.6 79 50.6
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 2.1e-06 55.8 66 51.5
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 2.8e-06 55.5 85 43.5
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 3.6e-06 55.1 79 46.8
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 8.1e-06 53.9 60 58.3


User provided reference genes

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