Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017117 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1417.9 791 100.0
CSS0049410 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1412.5 791 99.7
CSS0022979 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1383.6 791 98.0
CSS0024724 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1314.7 791 90.6
CSS0004912 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1283.1 791 85.3
CSS0041949 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 1.1e-206 724.2 369 95.9
CSS0031977 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112456 3.1e-140 503.4 407 84.3
CSS0043274 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D111155 3.1e-140 503.4 407 84.3
CSS0018317 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D110529 2.0e-139 500.7 407 84.0
CSS0031809 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D108891 9.0e-132 475.3 407 75.9
CSS0042992 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D111024 3.5e-128 463.4 407 78.9
CSS0026356 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112650 9.2e-44 183.0 583 30.2
CSS0014082 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112965 2.4e-36 158.3 596 30.5
Solyc05g010817.1 Solanum lycopersicum HOM05D008778 ORTHO05D003639 4.4e-22 110.9 247 29.6
Sopen00g002430 Solanum pennellii HOM05D008778 ORTHO05D003639 5.8e-22 110.5 275 29.1
Sopen00g007290 Solanum pennellii HOM05D008778 ORTHO05D003639 5.8e-22 110.5 275 29.1
Peaxi162Scf00820g00117 Petunia axillaris HOM05D008778 ORTHO05D003639 9.3e-20 103.2 230 27.8
Sopen09g003880 Solanum pennellii HOM05D008778 ORTHO05D003639 3.5e-19 101.3 232 31.0
Peaxi162Scf00820g00119 Petunia axillaris HOM05D008778 ORTHO05D003639 1.7e-18 99.0 234 28.2
CSS0044889 Camellia sinensis var. sinensis HOM05D008778 ORTHO05D003639 5.6e-17 94.0 233 32.6
FvH4_3g26742 Fragaria vesca HOM05D016656 ORTHO05D003639 7.4e-17 93.6 234 30.8
Nitab4.5_0000663g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 2.1e-16 92.0 234 29.5
Nitab4.5_0001698g0060 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.1e-15 89.7 351 25.9
Peaxi162Scf00169g01112 Petunia axillaris HOM05D008778 ORTHO05D003639 1.1e-15 89.7 232 30.2
Nitab4.5_0000663g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 5.3e-15 87.4 233 29.2
Nitab4.5_0001698g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 5.3e-15 87.4 350 24.6
Nitab4.5_0001698g0040 Nicotiana tabacum HOM05D008778 ORTHO05D003639 9.0e-15 86.7 237 28.3
RcHm_v2.0_Chr5g0049171 Rosa chinensis HOM05D016656 ORTHO05D003639 2.0e-14 85.5 234 29.5
QL01p013702 Quercus lobata HOM05D009149 ORTHO05D003639 5.8e-14 84.0 347 24.5
FvH4_5g16044 Fragaria vesca HOM05D060084 ORTHO05D046536 1.3e-13 82.8 246 27.2
PGSC0003DMG400002681 Solanum tuberosum HOM05D008778 ORTHO05D003639 2.4e-12 78.6 380 23.7
Sabra13G0012400 Salix brachista HOM05D020966 ORTHO05D010251 1.2e-11 76.3 250 28.0
Sopen09g003890 Solanum pennellii HOM05D000006 ORTHO05D000001 2.1e-11 75.5 368 24.5
RcHm_v2.0_Chr2g0138191 Rosa chinensis HOM05D008702 ORTHO05D003639 3.0e-10 71.6 246 28.5
FAN25G0588 Fragaria x ananassa HOM05D016656 ORTHO05D003639 3.9e-10 71.2 177 30.5
RcHm_v2.0_Chr1g0321631 Rosa chinensis HOM05D008702 ORTHO05D003639 6.7e-10 70.5 245 26.5
RcHm_v2.0_Chr2g0116581 Rosa chinensis HOM05D008702 ORTHO05D003639 1.5e-09 69.3 245 26.9
RcHm_v2.0_Chr2g0142701 Rosa chinensis HOM05D008702 ORTHO05D003639 1.9e-09 68.9 245 27.3
Cc00_g19240 Coffea canephora HOM05D009149 ORTHO05D003639 5.6e-09 67.4 225 27.6
Nitab4.5_0007634g0020 Nicotiana tabacum HOM05D008778 ORTHO05D003639 9.6e-09 66.6 167 28.1
RcHm_v2.0_Chr2g0121071 Rosa chinensis HOM05D008702 ORTHO05D003639 1.3e-08 66.2 355 25.4
RcHm_v2.0_Chr7g0194611 Rosa chinensis HOM05D009149 ORTHO05D003639 2.8e-08 65.1 246 26.4
RcHm_v2.0_Chr2g0152981 Rosa chinensis HOM05D008702 ORTHO05D003639 4.8e-08 64.3 353 24.1
Nitab4.5_0006587g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 6.2e-08 63.9 137 24.8
FAN19G0432 Fragaria x ananassa HOM05D016497 ORTHO05D019154 8.1e-08 63.5 172 29.1
RcHm_v2.0_Chr1g0320431 Rosa chinensis HOM05D008702 ORTHO05D003639 4.0e-07 61.2 187 27.3
Peaxi162Scf00820g00045 Petunia axillaris HOM05D008778 ORTHO05D003639 6.9e-07 60.5 237 27.0
CSS0044261 Camellia sinensis var. sinensis HOM05D013673 ORTHO05D015012 2.0e-06 58.9 239 25.9
vmacro21029 Vaccinium macrocarpon HOM05D001320 ORTHO05D002136 4.5e-06 57.8 155 26.5
Dinv06719 Davidia involucrata HOM05D039347 ORTHO05D025265 5.8e-06 57.4 132 28.8


User provided reference genes

Program Settings