Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017076 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.5e-36 154.8 74 100.0
CSS0034716 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D112718 3.4e-33 144.4 74 93.2
CSS0009047 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D109769 5.8e-33 143.7 74 94.6
CSS0002514 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D109754 2.2e-32 141.7 74 93.2
CSS0016115 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D111458 6.4e-32 140.2 74 91.9
CSS0004459 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D110053 3.0e-29 131.3 74 83.8
CSS0040962 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000689 2.0e-17 92.0 70 61.4
CSS0001511 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.3e-16 89.4 84 52.4
CSS0013605 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D009868 2.4e-15 85.1 84 51.2
CSS0017784 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.4e-15 85.1 84 50.0
CSS0017310 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 4.2e-15 84.3 84 51.2
CSS0012313 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D009868 5.4e-15 84.0 84 51.2
CSS0009187 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 7.1e-15 83.6 84 51.2
CSS0024661 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 9.3e-15 83.2 84 48.8
CSS0046978 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.6e-14 82.4 84 50.0
CSS0002283 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.1e-14 82.0 84 47.6
Rhsim04G0061400 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.1e-12 76.3 83 45.8
vmacro09303 Vaccinium macrocarpon HOM05D000038 ORTHO05D000689 2.5e-12 75.1 83 44.6
TWI18G0179 Tripterygium wilfordii HOM05D000038 ORTHO05D000689 7.4e-12 73.6 83 44.6
vmacro09304 Vaccinium macrocarpon HOM05D000038 ORTHO05D000689 1.3e-11 72.8 82 43.9
vmacro09301 Vaccinium macrocarpon HOM05D000038 ORTHO05D000689 2.8e-11 71.6 83 43.4
DCAR_012969 Daucus carota HOM05D000038 ORTHO05D000689 4.8e-11 70.9 83 41.0
CSS0022261 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 8.1e-11 70.1 82 47.6
Rhsim04G0060500 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.1e-10 69.7 84 42.9
CSS0006040 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.8e-10 68.9 82 41.5
CSS0008527 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.8e-10 68.9 82 41.5
Rhsim04G0059200 Rhododendron simsii HOM05D000013 ORTHO05D000689 1.8e-10 68.9 84 42.9
Rhsim04G0060400 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.8e-10 68.9 84 42.9
RhsimUnG0197300 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.8e-10 68.9 84 42.9
RhsimUnG0131800 Rhododendron simsii HOM05D000038 ORTHO05D000689 2.4e-10 68.6 84 42.9
CANSAT64G2175 Cannabis sativa HOM05D000038 ORTHO05D000689 3.1e-10 68.2 83 43.4
Rhsim04G0061000 Rhododendron simsii HOM05D000038 ORTHO05D000689 3.1e-10 68.2 84 41.7
CSS0018809 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 4.0e-10 67.8 83 42.2
Rhsim04G0061200 Rhododendron simsii HOM05D000038 ORTHO05D000689 5.3e-10 67.4 84 42.9
RhsimUnG0113300 Rhododendron simsii HOM05D000013 ORTHO05D000689 6.9e-10 67.0 84 41.7
Hma1.2p1_1090F.1_g255780 Hydrangea macrophylla HOM05D000038 ORTHO05D000689 9.0e-10 66.6 83 42.2
CSS0022758 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.2e-09 66.2 82 40.2
Rhsim04G0060200 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.2e-09 66.2 84 41.7
Actinidia39295 Actinidia chinensis HOM05D000038 ORTHO05D000689 1.5e-09 65.9 83 38.6
CSS0028873 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.5e-09 65.9 83 39.8
CSS0039385 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.5e-09 65.9 82 39.0
DCAR_019201 Daucus carota HOM05D000038 ORTHO05D000689 1.5e-09 65.9 83 41.0
Lj3g0007077 Lotus japonicus HOM05D000038 ORTHO05D000689 2.0e-09 65.5 83 42.2
CSS0025699 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.6e-09 65.1 83 39.8
CSS0050341 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.6e-09 65.1 83 39.8
TWI75G1104 Tripterygium wilfordii HOM05D000038 ORTHO05D000689 2.6e-09 65.1 83 41.0
TWI75G1852 Tripterygium wilfordii HOM05D000038 ORTHO05D000689 2.6e-09 65.1 83 41.0
CSS0030882 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 3.4e-09 64.7 83 39.8
Sc21g0002150 Simmondsia chinensis HOM05D000038 ORTHO05D000689 3.4e-09 64.7 83 37.3
CSS0007750 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 7.6e-09 63.5 83 38.6
CSS0028738 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 7.6e-09 63.5 83 38.6
Manes.13G076800 Manihot esculenta HOM05D000038 ORTHO05D000689 1.0e-08 63.2 83 41.0
Phvul.005G110400 Phaseolus vulgaris HOM05D000038 ORTHO05D000689 1.0e-08 63.2 83 38.6
QL08p036241 Quercus lobata HOM05D000038 ORTHO05D000689 1.0e-08 63.2 83 39.8
arahy.Tifrunner.gnm1.ann1.AUSP9T Arachis hypogaea HOM05D000038 ORTHO05D000689 1.3e-08 62.8 83 39.8
CSS0028698 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.3e-08 62.8 84 42.9
TAR626G0246 Trochodendron aralioides HOM05D000038 ORTHO05D000689 1.3e-08 62.8 84 41.7
Aqoxy5G03337 Aquilegia oxysepala HOM05D000038 ORTHO05D000689 1.7e-08 62.4 83 39.8
Eucgr.E00508 Eucalyptus grandis HOM05D000038 ORTHO05D000689 1.7e-08 62.4 83 41.0
Eucgr.A01752 Eucalyptus grandis HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 38.6
HanXRQChr15g0479451 Helianthus annuus HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 38.6
Nitab4.5_0000945g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 37.3
CiPaw.03G166900 Carya illinoinensis HOM05D000038 ORTHO05D000689 6.5e-08 60.5 83 39.8
CiPaw.03G167200 Carya illinoinensis HOM05D000038 ORTHO05D000689 6.5e-08 60.5 83 39.8
Nitab4.5_0010290g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000689 6.5e-08 60.5 83 36.1
THA.LOC104798387 Tarenaya hassleriana HOM05D000038 ORTHO05D000689 6.5e-08 60.5 83 39.8
Aqoxy5G03338 Aquilegia oxysepala HOM05D000038 ORTHO05D000689 8.4e-08 60.1 83 38.6
CAN.G640.28 Capsicum annuum HOM05D000038 ORTHO05D000689 8.4e-08 60.1 83 34.9
Eucgr.A01762 Eucalyptus grandis HOM05D000038 ORTHO05D000689 8.4e-08 60.1 83 39.8
Eucgr.A01764 Eucalyptus grandis HOM05D000038 ORTHO05D000689 8.4e-08 60.1 83 39.8
Eucgr.A01765 Eucalyptus grandis HOM05D000038 ORTHO05D000689 8.4e-08 60.1 83 39.8
Sc12g0002650 Simmondsia chinensis HOM05D000038 ORTHO05D000689 8.4e-08 60.1 83 38.6
TAR627G0471 Trochodendron aralioides HOM05D000038 ORTHO05D000689 8.4e-08 60.1 83 39.8
arahy.Tifrunner.gnm1.ann1.D2YYPY Arachis hypogaea HOM05D000038 ORTHO05D000689 1.1e-07 59.7 83 37.3
arahy.Tifrunner.gnm1.ann1.M23BVA Arachis hypogaea HOM05D000038 ORTHO05D000689 1.1e-07 59.7 83 37.3
Ciclev10014281m.g Citrus clementina HOM05D000038 ORTHO05D000689 1.1e-07 59.7 83 37.3
Eucgr.E00499 Eucalyptus grandis HOM05D000038 ORTHO05D000689 1.1e-07 59.7 83 38.6
Glyma.12G104100 Glycine max HOM05D000038 ORTHO05D000689 1.1e-07 59.7 83 38.6
Sopen07g026780 Solanum pennellii HOM05D000038 ORTHO05D000689 1.1e-07 59.7 83 33.7
Duzib132G0772 Durio zibethinus HOM05D000038 ORTHO05D000689 1.4e-07 59.3 83 37.3
Glyma.06G300600 Glycine max HOM05D000038 ORTHO05D000689 1.4e-07 59.3 83 38.6
Lj3g0010627 Lotus japonicus HOM05D000038 ORTHO05D000689 1.4e-07 59.3 83 37.3
Nn1g03819 Nelumbo nucifera HOM05D000038 ORTHO05D000689 1.4e-07 59.3 83 37.3
CiPaw.04G121500 Carya illinoinensis HOM05D000038 ORTHO05D000689 1.9e-07 58.9 83 37.3
Eucgr.K00400 Eucalyptus grandis HOM05D000038 ORTHO05D000689 1.9e-07 58.9 83 38.6
Gorai.008G151000 Gossypium raimondii HOM05D000038 ORTHO05D000689 1.9e-07 58.9 91 40.7
Potri.013G121000 Populus trichocarpa HOM05D000038 ORTHO05D000689 1.9e-07 58.9 84 39.3
Potri.013G149500 Populus trichocarpa HOM05D000038 ORTHO05D000689 1.9e-07 58.9 84 39.3
Solyc07g053220.2 Solanum lycopersicum HOM05D000038 ORTHO05D000689 1.9e-07 58.9 83 33.7
VMungo1080G1064 Vigna mungo HOM05D000038 ORTHO05D000689 1.9e-07 58.9 83 37.3
Ca_01552_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 2.5e-07 58.5 83 37.3
RcHm_v2.0_Chr2g0161191 Rosa chinensis HOM05D000038 ORTHO05D000689 2.5e-07 58.5 85 42.4
PGSC0003DMG400042814 Solanum tuberosum HOM05D000038 ORTHO05D000689 2.5e-07 58.5 83 33.7
MSTRG.13298 Avicennia marina HOM05D000038 ORTHO05D000689 3.2e-07 58.2 83 39.8
MSTRG.14046 Avicennia marina HOM05D000038 ORTHO05D000689 3.2e-07 58.2 83 39.8
Ca_08325_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 3.2e-07 58.2 83 38.6
Haze_13038 Corylus avellana HOM05D000013 ORTHO05D000689 3.2e-07 58.2 83 39.8
PSO541G1496 Papaver somniferum HOM05D000038 ORTHO05D000689 3.2e-07 58.2 84 34.5
PSO675G5754 Papaver somniferum HOM05D000038 ORTHO05D000689 3.2e-07 58.2 84 34.5
PSO675G9226 Papaver somniferum HOM05D000038 ORTHO05D000689 3.2e-07 58.2 84 34.5
Peaxi162Scf00007g00185 Petunia axillaris HOM05D000038 ORTHO05D000689 3.2e-07 58.2 83 34.9
Potri.019G119200 Populus trichocarpa HOM05D000038 ORTHO05D000689 3.2e-07 58.2 84 39.3
EL10Ac6g14776 Beta vulgaris HOM05D000038 ORTHO05D000689 4.2e-07 57.8 83 33.7
Haze_13033 Corylus avellana HOM05D000038 ORTHO05D000689 4.2e-07 57.8 83 38.6
Eucgr.A01759 Eucalyptus grandis HOM05D000038 ORTHO05D000689 4.2e-07 57.8 83 38.6
Eucgr.L01774 Eucalyptus grandis HOM05D000038 ORTHO05D000689 4.2e-07 57.8 83 38.6
HanXRQChr01g0019951 Helianthus annuus HOM05D000038 ORTHO05D000689 4.2e-07 57.8 65 40.0
HanXRQChr15g0479471 Helianthus annuus HOM05D000038 ORTHO05D000689 4.2e-07 57.8 83 34.9
Nn1g06833 Nelumbo nucifera HOM05D000038 ORTHO05D000689 4.2e-07 57.8 83 36.1
PSO541G6007 Papaver somniferum HOM05D000038 ORTHO05D000689 4.2e-07 57.8 84 34.5
PGR042G0040 Punica granatum HOM05D000038 ORTHO05D000689 4.2e-07 57.8 83 36.1
AUR62033724 Chenopodium quinoa HOM05D000038 ORTHO05D000689 5.5e-07 57.4 83 36.1
Cc05_g05720 Coffea canephora HOM05D000038 ORTHO05D000689 5.5e-07 57.4 83 37.3
Haze_13035 Corylus avellana HOM05D000038 ORTHO05D000689 5.5e-07 57.4 83 39.8
Eucgr.A01755 Eucalyptus grandis HOM05D000038 ORTHO05D000689 5.5e-07 57.4 83 38.6
Eucgr.E00507 Eucalyptus grandis HOM05D000038 ORTHO05D000689 5.5e-07 57.4 81 38.3
Eucgr.F02500 Eucalyptus grandis HOM05D000038 ORTHO05D000689 5.5e-07 57.4 83 38.6
Glyma.13G303400 Glycine max HOM05D000038 ORTHO05D000689 5.5e-07 57.4 82 39.0
Medtr2g089360 Medicago truncatula HOM05D000038 ORTHO05D000689 5.5e-07 57.4 83 37.3
Psat5g267480 Pisum sativum HOM05D000038 ORTHO05D000689 5.5e-07 57.4 83 39.8
PGR042G1332 Punica granatum HOM05D000038 ORTHO05D000689 5.5e-07 57.4 83 36.1
AT2G19130 Arabidopsis thaliana HOM05D000038 ORTHO05D000689 7.1e-07 57.0 84 38.1
Carub.0003s3336 Capsella rubella HOM05D000038 ORTHO05D000689 7.1e-07 57.0 85 37.6
ClCG02G001430 Citrullus lanatus HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 39.8
Ciclev10014278m.g Citrus clementina HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 36.1
CsaV3_7G004020 Cucumis sativus L. HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 37.3
Lj3g0022501 Lotus japonicus HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 38.6
Thecc.02G167400 Theobroma cacao HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 37.3
CARHR215810 Cardamine hirsuta HOM05D000038 ORTHO05D000689 9.3e-07 56.6 84 38.1
Ciclev10018024m.g Citrus clementina HOM05D000038 ORTHO05D000689 9.3e-07 56.6 87 34.5
FAN05G5313 Fragaria x ananassa HOM05D000038 ORTHO05D000689 9.3e-07 56.6 85 40.0
FAN09G0976 Fragaria x ananassa HOM05D000038 ORTHO05D000689 9.3e-07 56.6 85 40.0
Medtr0280s0040 Medicago truncatula HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 38.6
Oeu059071.3 Olea europaea HOM05D000013 ORTHO05D000689 9.3e-07 56.6 83 37.3
Phvul.011G109100 Phaseolus vulgaris HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 37.3
Psat7g202800 Pisum sativum HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 38.6
PGR042G0775 Punica granatum HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 33.7
TAR627G0198 Trochodendron aralioides HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 37.3
ATR1132G126 Amborella trichopoda HOM05D000013 ORTHO05D000689 1.2e-06 56.2 83 39.8
Cpa.g.sc34.57 Carica papaya HOM05D000038 ORTHO05D000689 1.2e-06 56.2 83 37.3
CiPaw.03G167100 Carya illinoinensis HOM05D000038 ORTHO05D000689 1.2e-06 56.2 83 38.6
Ca_01553_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 1.2e-06 56.2 83 37.3
Prupe.3G227500 Prunus persica HOM05D000038 ORTHO05D000689 1.2e-06 56.2 84 39.3
ATR1132G110 Amborella trichopoda HOM05D000038 ORTHO05D000689 1.6e-06 55.8 83 41.0
ECA236G3353 Erigeron canadensis HOM05D000038 ORTHO05D000689 1.6e-06 55.8 83 36.1
MBI02_g01123_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D009868 1.6e-06 55.8 83 38.6
Sabra19G0119800 Salix brachista HOM05D000038 ORTHO05D009868 1.6e-06 55.8 101 37.6
Sabra19G0134200 Salix brachista HOM05D000038 ORTHO05D009868 1.6e-06 55.8 101 37.6
Haze_13031 Corylus avellana HOM05D000013 ORTHO05D000689 2.1e-06 55.5 83 36.1
Haze_13034 Corylus avellana HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 38.6
HanXRQChr17g0542531 Helianthus annuus HOM05D000038 ORTHO05D000689 2.1e-06 55.5 82 34.1
HanXRQChr17g0542571 Helianthus annuus HOM05D000038 ORTHO05D000689 2.1e-06 55.5 82 34.1
MBI02_g01122_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 38.6
VMungo1127G0525 Vigna mungo HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 36.1
Zm00001eb119590 Zea mays HOM05D000038 ORTHO05D009868 2.1e-06 55.5 83 36.1
Ah.01g015240 Amaranthus hybridus HOM05D000038 ORTHO05D000689 2.7e-06 55.1 83 36.1
AL3G52790 Arabidopsis lyrata HOM05D000038 ORTHO05D000689 2.7e-06 55.1 84 36.9
Ca_01551_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 2.7e-06 55.1 83 38.6
RcHm_v2.0_Chr2g0161171 Rosa chinensis HOM05D000038 ORTHO05D000689 2.7e-06 55.1 85 42.4
TPR.G30082 Trifolium pratense HOM05D000038 ORTHO05D000689 2.7e-06 55.1 83 37.3
HPP92_012370 Vanilla planifolia HOM05D000038 ORTHO05D000689 2.7e-06 55.1 83 33.7
Lsat_1_v5_gn_3_42080 Lactuca sativa HOM05D000038 ORTHO05D000689 3.5e-06 54.7 82 35.4
MBI02_g01125_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000689 3.5e-06 54.7 83 38.6
Duzib052G0031 Durio zibethinus HOM05D000038 ORTHO05D000689 4.6e-06 54.3 83 36.1
Psat7g202960 Pisum sativum HOM05D000038 ORTHO05D000689 4.6e-06 54.3 83 36.1
Sabra19G0120000 Salix brachista HOM05D000038 ORTHO05D000689 4.6e-06 54.3 84 38.1
Sabra19G0134000 Salix brachista HOM05D000038 ORTHO05D000689 4.6e-06 54.3 84 38.1
CANSAT64G2052 Cannabis sativa HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 34.9
Eucgr.A01757 Eucalyptus grandis HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 38.6
HanXRQChr17g0559701 Helianthus annuus HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 33.7
MBI02_g01119_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 38.6
MELO3C018777.2 Cucumis melo HOM05D000038 ORTHO05D000689 7.9e-06 53.5 83 36.1
Lsat_1_v5_gn_3_33741 Lactuca sativa HOM05D000038 ORTHO05D000689 7.9e-06 53.5 83 33.7
Lj3g0020922 Lotus japonicus HOM05D000038 ORTHO05D000689 7.9e-06 53.5 83 36.1
Medtr2g089440 Medicago truncatula HOM05D000038 ORTHO05D000689 7.9e-06 53.5 83 33.7
TPR.G18064 Trifolium pratense HOM05D000038 ORTHO05D000689 7.9e-06 53.5 83 36.1


User provided reference genes

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