Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017071 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 2.7e-135 485.3 248 100.0
CSS0038394 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 5.7e-125 451.1 248 96.4
CSS0036916 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 2.3e-102 375.9 225 91.6
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 4.1e-75 285.4 225 73.3
Dinv09474 Davidia involucrata HOM05D000240 ORTHO05D002608 5.8e-69 265.0 224 67.0
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 6.2e-63 245.0 225 65.3
QL07p009794 Quercus lobata HOM05D000240 ORTHO05D002608 4.4e-61 238.8 230 61.3
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 1.9e-56 223.4 230 56.5
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 6.2e-55 218.4 230 54.8
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 1.8e-54 216.9 230 57.8
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 5.8e-53 211.8 226 58.8
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 5.8e-53 211.8 226 58.8
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 1.7e-52 210.3 225 57.3
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 2.9e-52 209.5 230 53.5
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 3.8e-52 209.1 227 58.1
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 5.4e-51 205.3 228 58.3
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 1.6e-50 203.8 226 55.8
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 1.6e-50 203.8 222 58.1
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 2.1e-50 203.4 226 55.3
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 3.5e-50 202.6 217 56.7
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 7.8e-50 201.4 226 54.9
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 1.3e-49 200.7 221 54.3
ClCG10G016160 Citrullus lanatus HOM05D000240 ORTHO05D002608 3.0e-49 199.5 227 54.2
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 5.1e-49 198.7 220 56.8
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 1.6e-47 193.7 220 56.8
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.6e-47 193.7 220 56.8
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 3.6e-47 192.6 231 51.1
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 4.8e-47 192.2 228 53.1
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 4.8e-47 192.2 220 56.4
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 5.3e-46 188.7 217 53.9
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 9.0e-46 188.0 228 51.8
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 2.6e-45 186.4 207 55.6
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 3.4e-45 186.0 225 53.8
Atru.chr12.1237 Acer truncatum HOM05D000240 ORTHO05D002608 4.5e-45 185.7 217 52.5
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 9.9e-45 184.5 222 51.4
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 2.2e-44 183.3 243 47.7
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 6.4e-44 181.8 206 55.3
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.4e-43 180.6 218 54.1
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 3.2e-43 179.5 220 52.7
Lalb_Chr21g0316681 Lupinus albus HOM05D000240 ORTHO05D002608 7.1e-43 178.3 223 52.5
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 9.3e-43 177.9 220 52.3
Lj2A398T48 Lonicera japonica HOM05D000240 ORTHO05D002608 1.2e-42 177.6 195 57.4
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 2.7e-42 176.4 220 51.8
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 3.5e-42 176.0 220 50.5
MSTRG.6373 Avicennia marina HOM05D000240 ORTHO05D002608 7.9e-42 174.9 220 50.5
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 1.8e-41 173.7 227 48.5
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 4.3e-40 169.1 221 49.8
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 7.4e-40 168.3 202 52.5
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 1.3e-39 167.5 226 47.8
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 4.8e-39 165.6 226 47.8
Cc00_g02390 Coffea canephora HOM05D000240 ORTHO05D002608 1.8e-38 163.7 192 55.7
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 2.4e-38 163.3 229 48.0
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 2.4e-38 163.3 234 47.0
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 1.2e-37 161.0 219 46.6
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 1.5e-37 160.6 234 46.2
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 2.0e-37 160.2 234 46.6
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 3.4e-37 159.5 234 46.2
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 1.3e-36 157.5 223 46.6
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 2.2e-36 156.8 220 50.0
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 2.9e-36 156.4 227 48.0
Aqoxy1G00453 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 8.4e-36 154.8 227 44.5
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea HOM05D000240 ORTHO05D002608 3.2e-35 152.9 218 46.8
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 7.1e-35 151.8 226 44.7
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 7.1e-35 151.8 223 45.7
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 1.2e-34 151.0 222 46.8
Oeu059363.3 Olea europaea HOM05D000240 ORTHO05D002608 2.7e-34 149.8 199 51.8
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea HOM05D000240 ORTHO05D002608 2.3e-33 146.7 218 45.0
VMungo0647G0305 Vigna mungo HOM05D000240 ORTHO05D002608 2.3e-33 146.7 197 46.7
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 6.7e-33 145.2 230 45.7
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 8.7e-33 144.8 242 43.8
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 7.4e-32 141.7 208 43.3
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 2.8e-31 139.8 229 42.4
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 3.7e-31 139.4 226 46.5
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 6.2e-31 138.7 205 45.9
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 3.4e-29 132.9 208 41.8
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 2.9e-28 129.8 225 40.4
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 8.4e-28 128.3 210 39.0
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 3.5e-26 122.9 241 39.8
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 5.1e-25 119.0 230 38.3
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.1e-24 117.9 117 59.8
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 2.5e-24 116.7 192 43.2
Ca_12048_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 5.7e-24 115.5 210 41.0
ATR0580G186 Amborella trichopoda HOM05D000240 ORTHO05D002608 2.4e-22 110.2 215 39.5
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 6.9e-22 108.6 204 40.2
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 4.2e-19 99.4 179 41.9
Psat6g089440 Pisum sativum HOM05D000240 ORTHO05D002608 3.0e-17 93.2 226 31.9
HPP92_010739 Vanilla planifolia HOM05D000240 ORTHO05D002608 6.7e-17 92.0 173 39.3
Peaxi162Scf01010g00017 Petunia axillaris HOM05D000240 ORTHO05D002608 2.5e-16 90.1 143 45.5
BraA10t45353Z Brassica rapa HOM05D000240 ORTHO05D002608 5.7e-16 89.0 185 37.3
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 7.4e-16 88.6 89 57.3
MD12G1093000 Malus domestica HOM05D000240 ORTHO05D002608 2.8e-15 86.7 103 55.3
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 1.1e-14 84.7 225 36.9
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 1.1e-14 84.7 226 31.0
Zm00001eb313020 Zea mays HOM05D000240 ORTHO05D002608 1.4e-14 84.3 206 33.5
MBI14_g46138_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D016689 5.3e-14 82.4 73 60.3
Ciclev10006521m.g Citrus clementina HOM05D000240 ORTHO05D002608 1.4e-11 74.3 68 57.4
Ciclev10004865m.g Citrus clementina HOM05D000240 ORTHO05D002608 1.9e-11 73.9 66 57.6
SGA_v2.0_scaffold57G20198 Striga asiatica HOM05D000240 ORTHO05D002608 1.0e-09 68.2 142 38.7
Cpa.g.sc5.185 Carica papaya HOM05D000240 ORTHO05D002608 8.8e-09 65.1 68 52.9
MD12G1093100 Malus domestica HOM05D000240 ORTHO05D002608 1.1e-08 64.7 68 50.0
SEGI_22073 Sequoiadendron giganteum HOM05D000240 ORTHO05D002608 1.1e-08 64.7 166 33.1
FAN25G3688 Fragaria x ananassa HOM05D000240 ORTHO05D002608 7.4e-08 62.0 58 60.3
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 2.2e-07 60.5 67 50.7
AL4G43360 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 2.8e-07 60.1 94 43.6


User provided reference genes

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