Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 5.1e-174 614.4 323 100.0
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.4e-171 606.3 323 98.5
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 5.5e-144 514.6 322 84.2
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 9.3e-144 513.8 322 82.6
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.3e-142 509.2 325 81.5
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 5.1e-142 508.1 323 79.3
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 4.0e-139 498.4 321 81.6
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 9.0e-139 497.3 321 81.3
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 1.0e-137 493.8 320 75.3
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.2e-135 486.9 322 75.5
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 1.0e-134 483.8 333 78.1
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 1.8e-134 483.0 322 74.5
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 3.9e-134 481.9 323 74.9
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 2.8e-132 475.7 324 79.3
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 3.7e-132 475.3 323 73.7
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 6.3e-132 474.6 322 75.8
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 6.3e-132 474.6 324 76.2
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 2.4e-131 472.6 323 73.4
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 4.1e-131 471.9 323 73.7
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 9.0e-131 470.7 325 72.3
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 1.2e-130 470.3 331 71.6
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.5e-130 469.9 320 73.4
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 1.5e-130 469.9 322 73.3
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 7.6e-130 467.6 320 73.8
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 1.3e-129 466.8 320 73.1
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 2.2e-129 466.1 321 71.7
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 3.8e-129 465.3 320 71.2
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 5.0e-129 464.9 320 70.9
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 6.5e-129 464.5 322 76.7
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 1.4e-128 463.4 327 70.3
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 1.4e-128 463.4 320 72.5
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 1.4e-128 463.4 348 69.0
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 1.4e-128 463.4 322 72.4
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 1.9e-128 463.0 324 71.3
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 2.5e-128 462.6 323 69.0
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 2.5e-128 462.6 320 71.9
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 4.2e-128 461.8 325 71.1
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 4.2e-128 461.8 328 73.2
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 9.3e-128 460.7 321 69.8
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 1.2e-127 460.3 360 64.2
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 1.6e-127 459.9 322 69.3
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.7e-127 459.1 327 73.7
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 3.6e-127 458.8 321 70.4
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 3.9e-126 455.3 320 71.9
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 5.1e-126 454.9 321 70.4
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 8.7e-126 454.1 321 69.8
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 8.7e-126 454.1 317 70.3
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.1e-125 453.8 320 70.3
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 3.3e-125 452.2 323 71.5
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 4.3e-125 451.8 327 74.6
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 5.7e-125 451.4 324 69.8
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 7.4e-125 451.1 326 70.6
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 9.7e-125 450.7 321 69.8
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.3e-124 450.3 283 75.6
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 1.3e-124 450.3 321 68.8
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 2.2e-124 449.5 321 72.9
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 2.8e-124 449.1 324 73.1
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 3.7e-124 448.7 321 67.3
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 4.8e-124 448.4 322 69.3
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 6.3e-124 448.0 322 71.4
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 8.2e-124 447.6 322 75.5
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 8.2e-124 447.6 323 69.3
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 1.4e-123 446.8 348 68.1
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 2.4e-123 446.0 322 68.6
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 2.4e-123 446.0 324 71.6
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 3.1e-123 445.7 321 67.9
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 6.9e-123 444.5 322 69.6
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 1.2e-122 443.7 322 68.6
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 5.9e-122 441.4 321 67.6
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 5.9e-122 441.4 325 68.6
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 7.7e-122 441.0 322 68.6
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 7.7e-122 441.0 325 68.9
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 1.3e-121 440.3 322 73.0
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 1.3e-121 440.3 323 72.8
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.7e-121 439.9 325 69.2
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.7e-121 439.9 325 69.2
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.7e-121 439.9 323 69.3
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 2.2e-121 439.5 318 70.8
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 2.2e-121 439.5 318 70.8
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 2.9e-121 439.1 323 69.0
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 2.9e-121 439.1 327 67.3
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 5.0e-121 438.3 326 69.0
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 6.5e-121 438.0 328 68.9
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 1.1e-120 437.2 287 74.2
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 2.5e-120 436.0 330 68.8
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.2e-120 435.6 326 68.7
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 5.5e-120 434.9 323 69.7
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 5.5e-120 434.9 324 68.5
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 1.2e-119 433.7 327 70.6
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.6e-119 433.3 324 68.2
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 2.1e-119 433.0 327 71.6
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 2.1e-119 433.0 327 70.9
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 1.4e-118 430.3 322 67.7
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.8e-118 429.9 328 71.0
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 1.8e-118 429.9 329 67.2
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 2.3e-118 429.5 330 67.6
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 7.4e-117 424.5 321 66.0
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 1.1e-112 410.6 325 63.4
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 1.9e-112 409.8 498 48.2
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 8.8e-110 401.0 262 72.5
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 1.3e-108 397.1 289 69.2
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 2.4e-107 392.9 286 67.1
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 2.0e-106 389.8 313 64.9
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 2.0e-106 389.8 265 69.8
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 1.7e-105 386.7 262 72.9
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 8.0e-103 377.9 325 60.6
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 6.7e-102 374.8 383 52.0
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 8.6e-89 331.3 202 79.7
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 4.0e-86 322.4 190 81.6
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 1.5e-85 320.5 183 85.8
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 7.5e-85 318.2 268 55.6
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 1.0e-81 307.8 168 89.3
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 6.6e-81 305.1 170 87.6
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 1.5e-80 303.9 176 84.7
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 4.3e-80 302.4 259 56.0
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 2.1e-79 300.1 175 82.9
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 4.6e-66 255.8 203 61.1
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.4e-59 233.4 184 64.7
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 4.3e-56 222.6 216 58.8
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 3.6e-55 219.5 123 88.6
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 8.7e-49 198.4 163 55.8
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.3e-48 196.1 121 80.2
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.2e-45 188.0 121 76.9
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 4.4e-45 186.0 120 73.3
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.2e-42 177.9 115 75.7
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 4.0e-38 162.9 151 62.9
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.4e-37 159.8 121 70.2
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.6e-34 149.4 95 78.9
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 1.8e-22 110.9 73 72.6
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 4.8e-15 86.3 124 40.3
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 1.0e-12 78.6 161 33.5
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 1.3e-12 78.2 55 67.3
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 5.0e-12 76.3 148 35.1
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 1.0e-09 68.6 174 26.4
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.4e-09 68.2 145 35.2
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 1.3e-07 61.6 151 31.1
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.7e-07 61.2 52 63.5
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 3.7e-07 60.1 146 30.1
Pp3c12_8840 Physcomitrium patens HOM05D005825 ORTHO05D006483 1.8e-06 57.8 244 26.2
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 5.3e-06 56.2 148 28.4


User provided reference genes

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