Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.3e-173 611.3 321 100.0
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.0e-171 604.7 321 98.8
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.9e-81 306.2 316 61.4
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 6.5e-81 305.1 300 58.3
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.6e-79 300.4 315 60.3
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 3.7e-68 262.7 273 54.9
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.1e-64 251.1 309 49.2
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 3.3e-64 249.6 314 48.1
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 4.0e-62 242.7 321 51.4
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.5e-61 240.7 315 50.2
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.0e-61 240.4 315 50.2
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 7.5e-61 238.4 301 50.8
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 2.8e-60 236.5 314 47.5
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 6.3e-60 235.3 317 45.4
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 8.3e-60 235.0 307 44.3
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.1e-59 234.6 323 50.2
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 7.0e-59 231.9 307 43.3
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 9.2e-59 231.5 316 44.6
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 2.9e-57 226.5 323 44.3
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 5.0e-57 225.7 313 43.1
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 6.6e-57 225.3 310 44.8
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 1.9e-56 223.8 349 44.4
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.9e-56 223.8 313 43.8
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 7.3e-56 221.9 316 50.3
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 8.0e-55 218.4 316 44.6
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.4e-54 217.6 317 45.4
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 4.0e-54 216.1 343 44.6
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 5.2e-54 215.7 233 51.5
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 6.8e-54 215.3 309 42.4
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.2e-53 214.5 319 46.1
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 1.2e-53 214.5 323 46.4
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.2e-53 214.5 297 50.2
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.5e-53 214.2 319 42.9
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.0e-53 213.8 306 49.3
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.6e-53 213.4 316 47.5
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.8e-53 212.2 327 47.4
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 7.5e-53 211.8 316 47.2
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.7e-52 209.5 321 47.7
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 7.0e-51 205.3 322 45.3
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 7.0e-51 205.3 326 44.8
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 2.7e-50 203.4 336 43.8
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.0e-49 201.4 319 40.1
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.3e-49 201.1 311 42.4
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 3.0e-49 199.9 323 39.0
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 3.9e-49 199.5 319 44.8
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 6.6e-49 198.7 312 42.0
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 8.6e-49 198.4 312 45.8
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.1e-48 198.0 308 45.5
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.6e-47 193.0 273 42.9
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 1.1e-46 191.4 297 39.4
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 2.3e-46 190.3 320 39.7
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 8.9e-46 188.3 333 44.1
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 8.9e-46 188.3 333 41.7
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.2e-44 183.7 312 40.4
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.9e-44 183.3 295 46.1
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 4.1e-43 179.5 316 44.6
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 3.5e-42 176.4 341 36.1
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 6.0e-42 175.6 332 41.0
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 5.1e-41 172.6 304 43.1
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.1e-40 171.4 309 38.2
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 1.5e-40 171.0 303 43.6
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.5e-40 171.0 302 37.7
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 2.5e-40 170.2 300 41.7
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 3.3e-40 169.9 315 40.0
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 5.6e-40 169.1 317 37.2
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 9.5e-40 168.3 307 43.6
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.6e-39 167.5 308 42.2
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.1e-39 167.2 288 41.0
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.8e-39 166.8 288 39.2
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 3.6e-39 166.4 310 38.1
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 8.1e-39 165.2 321 40.8
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 4.0e-38 162.9 326 34.4
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 6.8e-38 162.2 207 47.8
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.5e-37 161.0 323 34.4
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 2.0e-37 160.6 321 35.5
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.3e-36 157.9 325 34.2
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 1.7e-36 157.5 313 41.2
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.2e-36 157.1 326 39.3
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 3.7e-36 156.4 314 38.5
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.7e-36 156.4 305 38.4
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 1.4e-35 154.5 305 38.7
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 7.1e-35 152.1 324 39.5
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 9.2e-35 151.8 309 39.8
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 9.2e-35 151.8 309 39.8
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.6e-34 151.0 309 40.5
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 2.7e-34 150.2 316 40.8
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 2.7e-34 150.2 323 37.5
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 3.5e-34 149.8 309 38.5
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 4.6e-34 149.4 309 38.8
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 4.6e-34 149.4 309 38.8
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 4.6e-34 149.4 304 34.9
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 1.3e-33 147.9 332 38.6
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.3e-33 147.9 297 35.0
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 3.9e-33 146.4 333 37.5
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 8.6e-33 145.2 316 36.7
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 8.6e-33 145.2 304 34.9
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.5e-32 144.4 297 34.7
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 5.6e-32 142.5 302 36.4
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 7.3e-32 142.1 316 37.3
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 9.6e-32 141.7 279 38.0
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.6e-31 141.0 278 42.4
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 2.1e-31 140.6 338 37.9
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 2.1e-31 140.6 335 37.3
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 2.1e-31 140.6 269 38.3
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 2.1e-31 140.6 304 38.2
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 8.1e-31 138.7 335 37.0
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.4e-30 137.9 318 36.8
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 6.8e-30 135.6 314 32.5
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.2e-29 134.8 310 35.5
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.6e-29 133.7 316 39.2
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 4.4e-29 132.9 291 41.6
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 2.2e-28 130.6 322 35.7
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 2.9e-28 130.2 300 37.0
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 3.8e-28 129.8 334 35.6
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 3.8e-28 129.8 304 31.9
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 8.4e-28 128.6 266 40.6
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.6e-26 124.4 295 36.3
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 1.3e-25 121.3 295 34.9
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.9e-25 119.8 301 33.9
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 3.9e-25 119.8 306 37.3
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 8.7e-25 118.6 297 36.4
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 9.6e-24 115.2 284 39.4
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 1.3e-23 114.8 295 32.5
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 2.8e-23 113.6 295 36.9
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 2.8e-23 113.6 292 37.7
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 4.8e-23 112.8 160 41.2
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 6.2e-23 112.5 315 33.0
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 1.4e-22 111.3 252 40.9
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.8e-22 110.9 296 37.5
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 5.3e-22 109.4 315 31.1
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 6.9e-22 109.0 316 29.4
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 3.4e-21 106.7 298 32.9
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 3.4e-21 106.7 189 37.0
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 5.8e-21 105.9 199 41.2
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.3e-20 104.8 320 29.4
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.7e-20 104.4 296 32.8
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 2.9e-20 103.6 288 36.1
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 2.9e-20 103.6 288 36.1
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 3.8e-20 103.2 288 36.1
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 2.4e-19 100.5 289 32.5
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 9.3e-19 98.6 294 30.3
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.6e-18 97.8 187 35.8
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 3.0e-17 93.6 287 33.8
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 1.9e-16 90.9 312 31.1
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 2.1e-15 87.4 275 38.2
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 1.8e-14 84.3 238 35.3
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 4.5e-13 79.7 267 35.2
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.6e-13 79.0 205 34.1
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 1.3e-12 78.2 130 37.7
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.3e-12 78.2 165 35.2
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.2e-12 77.4 171 36.8
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 1.9e-11 74.3 286 30.8
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 3.2e-11 73.6 162 34.6
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 5.4e-11 72.8 188 30.9
unitig_26.g10255 Utricularia gibba HOM05D004679 ORTHO05D005524 1.1e-06 58.5 155 28.4


User provided reference genes

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