Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017033 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.8e-116 422.5 206 100.0
CSS0011133 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 7.6e-107 390.6 204 93.1
CSS0039890 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.5e-102 376.3 204 91.2
CSS0004377 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 5.8e-99 364.4 198 89.4
CSS0036794 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 8.1e-93 344.0 189 88.9
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 4.5e-75 285.0 189 73.0
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 7.9e-72 274.2 183 70.5
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 1.1e-70 270.4 185 70.3
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 4.8e-69 265.0 186 67.7
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 2.4e-68 262.7 196 66.8
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 9.1e-68 260.8 181 70.2
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 1.5e-67 260.0 192 67.7
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 1.0e-66 257.3 195 63.1
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 2.9e-66 255.8 173 70.5
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 2.5e-65 252.7 194 63.9
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 4.6e-64 248.4 180 67.8
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 6.1e-64 248.1 194 62.4
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 1.8e-63 246.5 192 62.5
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 2.3e-63 246.1 194 60.3
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 1.1e-62 243.8 186 65.1
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 1.1e-62 243.8 184 64.1
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 3.3e-62 242.3 180 64.4
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 4.4e-62 241.9 179 66.5
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 1.3e-61 240.4 185 63.8
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 3.7e-61 238.8 190 64.7
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 4.8e-61 238.4 189 60.3
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.4e-60 236.9 178 62.9
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 3.1e-60 235.7 184 63.6
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 4.1e-60 235.3 189 63.0
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 1.2e-59 233.8 190 60.5
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 2.0e-59 233.0 178 64.0
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 2.0e-59 233.0 192 60.4
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 2.0e-59 233.0 178 62.9
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 2.6e-59 232.6 190 60.0
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 1.3e-58 230.3 176 64.2
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 1.3e-58 230.3 183 61.2
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 1.3e-58 230.3 181 62.4
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 1.7e-58 229.9 179 64.2
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 1.7e-58 229.9 190 62.1
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 2.2e-58 229.6 184 60.9
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.9e-58 229.2 189 61.9
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.8e-58 228.8 191 60.7
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 5.0e-58 228.4 190 59.5
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 1.1e-57 227.3 182 59.3
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.5e-57 226.1 189 61.4
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 7.2e-57 224.6 177 61.6
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 4.7e-56 221.9 196 58.2
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 7.9e-56 221.1 199 56.3
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.0e-55 220.7 194 55.7
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.4e-55 220.3 194 55.7
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.4e-55 220.3 194 55.7
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 3.9e-55 218.8 193 59.6
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 5.2e-55 218.4 189 59.3
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 6.7e-55 218.0 177 58.8
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 1.5e-54 216.9 190 57.4
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 1.5e-54 216.9 176 60.2
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 2.0e-54 216.5 186 58.1
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 4.4e-54 215.3 196 55.6
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 2.2e-53 213.0 191 58.1
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.7e-53 212.2 196 55.6
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 3.7e-53 212.2 176 60.8
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 4.8e-53 211.8 188 56.4
TAR633G0743 Trochodendron aralioides HOM05D003827 ORTHO05D004518 6.3e-53 211.5 187 54.5
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 4.1e-52 208.8 189 58.7
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 7.0e-52 208.0 176 61.4
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 1.2e-51 207.2 173 60.1
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.6e-51 206.8 176 60.2
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.6e-51 206.8 175 60.0
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 3.5e-51 205.7 178 59.6
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 4.5e-51 205.3 192 53.6
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 5.0e-50 201.8 176 59.1
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 6.5e-50 201.4 181 55.2
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 8.5e-50 201.1 178 54.5
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.5e-49 200.3 181 56.4
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.5e-49 200.3 181 56.4
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 4.2e-49 198.7 184 56.5
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 4.2e-49 198.7 184 56.5
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 7.2e-49 198.0 180 55.6
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 4.7e-48 195.3 180 53.9
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 6.1e-48 194.9 193 52.3
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 6.1e-48 194.9 186 54.3
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 1.0e-47 194.1 197 51.3
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 1.8e-47 193.4 191 53.4
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 3.0e-47 192.6 191 51.8
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 5.2e-47 191.8 191 53.4
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 5.2e-47 191.8 192 54.2
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 6.7e-47 191.4 186 52.7
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 1.2e-46 190.7 189 52.9
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 2.6e-46 189.5 186 51.6
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 2.6e-46 189.5 198 50.0
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 5.7e-46 188.3 194 55.2
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 5.7e-46 188.3 195 48.2
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 1.7e-45 186.8 202 49.0
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 3.7e-45 185.7 188 50.0
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 4.8e-45 185.3 200 52.0
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 8.2e-45 184.5 187 51.3
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 8.2e-45 184.5 187 51.3
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 1.4e-44 183.7 198 48.5
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 3.1e-44 182.6 187 52.4
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 5.3e-44 181.8 198 49.0
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 9.1e-44 181.0 184 50.5
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 4.5e-43 178.7 196 47.4
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 7.7e-43 177.9 188 52.7
TPR.G39105 Trifolium pratense HOM05D003827 ORTHO05D004518 1.3e-42 177.2 199 48.2
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 3.8e-42 175.6 199 45.7
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 5.0e-42 175.3 201 45.3
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 1.5e-41 173.7 194 48.5
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 1.9e-41 173.3 173 48.6
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 4.2e-41 172.2 192 46.9
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 5.5e-41 171.8 191 50.3
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 7.2e-41 171.4 164 54.3
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.6e-40 170.2 182 47.3
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 2.1e-40 169.9 194 49.5
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 4.7e-40 168.7 182 48.4
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 6.1e-40 168.3 187 43.9
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 1.4e-39 167.2 178 51.7
Lalb_Chr01g0019961 Lupinus albus HOM05D003827 ORTHO05D004518 1.1e-36 157.5 177 44.6
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 3.5e-35 152.5 183 48.6
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 7.7e-35 151.4 183 45.4
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 6.5e-34 148.3 193 42.5
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 8.6e-34 147.9 170 48.8
HanXRQChr15g0466901 Helianthus annuus HOM05D003827 ORTHO05D004518 1.5e-33 147.1 196 41.8
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 9.5e-33 144.4 189 41.3
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 4.7e-32 142.1 170 47.6
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 1.0e-31 141.0 169 47.3
QL11p007191 Quercus lobata HOM05D000005 ORTHO05D000012 1.0e-31 141.0 140 52.9
Carub.0005s3005 Capsella rubella HOM05D003827 ORTHO05D004518 1.8e-31 140.2 189 42.3
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 1.8e-31 140.2 191 44.0
SHI10022 Sapria himalayana HOM05D003827 ORTHO05D004518 4.0e-31 139.0 172 44.8
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 3.4e-30 136.0 169 46.2
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 5.7e-30 135.2 189 38.6
ECA247G1386 Erigeron canadensis HOM05D003827 ORTHO05D004518 1.1e-28 131.0 194 43.3
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 1.3e-26 124.0 97 56.7
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 2.3e-26 123.2 176 40.9
Nn3g21249 Nelumbo nucifera HOM05D003827 ORTHO05D004518 1.2e-22 110.9 108 50.0
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 6.4e-21 105.1 174 42.0
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 8.3e-21 104.8 174 42.0
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 1.1e-20 104.4 174 42.0
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 1.1e-20 104.4 171 44.4
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 1.6e-19 100.5 173 41.0
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 4.6e-19 99.0 173 40.5
HPP92_020343 Vanilla planifolia HOM05D003827 ORTHO05D004518 2.2e-13 80.1 174 29.9
HPP92_024347 Vanilla planifolia HOM05D003827 ORTHO05D004518 3.7e-13 79.3 191 31.9
SEGI_41162 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 2.5e-09 66.6 196 30.1
SGA_v2.0_scaffold28G11742 Striga asiatica HOM05D001693 ORTHO05D001588 7.3e-09 65.1 193 32.1
SEGI_17249 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 1.2e-08 64.3 175 32.0
Cpa.g.sc14.190 Carica papaya HOM05D001693 ORTHO05D001588 2.8e-08 63.2 210 31.0
SalBow1G3500 Salvia bowleyana HOM05D001693 ORTHO05D001588 2.8e-08 63.2 203 31.5
SalBow1G8326 Salvia bowleyana HOM05D001693 ORTHO05D001588 3.6e-08 62.8 169 36.7
C09p61530 Brassica napus HOM05D001693 ORTHO05D001588 8.1e-08 61.6 201 31.8
BolC9t58992H Brassica oleracea HOM05D001693 ORTHO05D001588 8.1e-08 61.6 201 31.8
QL02p067404 Quercus lobata HOM05D001693 ORTHO05D001588 8.1e-08 61.6 209 29.7
HanXRQChr17g0546021 Helianthus annuus HOM05D001693 ORTHO05D001588 3.1e-07 59.7 185 27.6
ECA232G0439 Erigeron canadensis HOM05D001693 ORTHO05D001588 4.0e-07 59.3 214 31.8
BcaC03g18556 Brassica carinata HOM05D001693 ORTHO05D001588 8.9e-07 58.2 206 29.1
Zm00001eb200650 Zea mays HOM05D003827 ORTHO05D004518 8.9e-07 58.2 176 26.7
C02p07800 Brassica napus HOM05D001693 ORTHO05D001588 1.5e-06 57.4 218 27.5
PSO478G0756 Papaver somniferum HOM05D001693 ORTHO05D001588 1.5e-06 57.4 203 30.0
Hma1.2p1_0029F.1_g018050 Hydrangea macrophylla HOM05D001693 ORTHO05D001588 2.0e-06 57.0 170 32.4
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 2.0e-06 57.0 178 29.8
BraA08t34963Z Brassica rapa HOM05D001693 ORTHO05D001588 2.6e-06 56.6 203 28.6
unitig_37.g12719 Utricularia gibba HOM05D001693 ORTHO05D001588 2.6e-06 56.6 205 27.8
Lj4C120T11 Lonicera japonica HOM05D001693 ORTHO05D001588 3.4e-06 56.2 197 25.4
PSO017G6934 Papaver somniferum HOM05D001693 ORTHO05D001588 3.4e-06 56.2 204 29.4
TAR374G0252 Trochodendron aralioides HOM05D001693 ORTHO05D001588 3.4e-06 56.2 177 28.8
BolC2t06709H Brassica oleracea HOM05D001693 ORTHO05D001588 4.4e-06 55.8 217 27.6
Thhalv10018061m.g Eutrema salsugineum HOM05D001693 ORTHO05D001588 5.8e-06 55.5 225 28.4
Carub.0001s1825 Capsella rubella HOM05D001693 ORTHO05D001588 7.5e-06 55.1 210 25.7
HanXRQChr16g0522171 Helianthus annuus HOM05D001693 ORTHO05D001588 7.5e-06 55.1 192 29.7
Lsat_1_v5_gn_3_96320 Lactuca sativa HOM05D001693 ORTHO05D001588 7.5e-06 55.1 169 26.6
Atru.chr8.479 Acer truncatum HOM05D001693 ORTHO05D001588 9.9e-06 54.7 212 28.3
Aa31LG4G4480 Aethionema arabicum HOM05D001693 ORTHO05D001588 9.9e-06 54.7 218 28.4
Cc07_g04320 Coffea canephora HOM05D001693 ORTHO05D001588 9.9e-06 54.7 148 31.1
MBI19_g13319_MAGBIO Magnolia biondii HOM05D001693 ORTHO05D001588 9.9e-06 54.7 218 28.0
THA.LOC104820992 Tarenaya hassleriana HOM05D001693 ORTHO05D001588 9.9e-06 54.7 222 28.8


User provided reference genes

Program Settings