Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017005 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 2.8e-46 188.3 102 100.0
CSS0001542 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 6.1e-33 144.1 112 75.9
Actinidia05847 Actinidia chinensis HOM05D007302 ORTHO05D009191 2.3e-32 142.1 116 73.3
CSS0004707 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 6.8e-32 140.6 112 75.0
Manes.10G151800 Manihot esculenta HOM05D007302 ORTHO05D009191 1.5e-31 139.4 114 70.2
vmacro13612 Vaccinium macrocarpon HOM05D007302 ORTHO05D009191 3.4e-31 138.3 114 71.1
Actinidia31711 Actinidia chinensis HOM05D007302 ORTHO05D009191 2.2e-30 135.6 116 68.1
FAN06G3306 Fragaria x ananassa HOM05D007302 ORTHO05D009191 2.2e-30 135.6 107 72.0
FAN10G3108 Fragaria x ananassa HOM05D007302 ORTHO05D009191 2.2e-30 135.6 107 72.0
Actinidia25680 Actinidia chinensis HOM05D007302 ORTHO05D009191 3.7e-30 134.8 112 69.6
Prupe.2G003100 Prunus persica HOM05D007302 ORTHO05D009191 4.8e-30 134.4 110 70.0
SGA_v2.0_scaffold95G28773 Striga asiatica HOM05D007302 ORTHO05D009191 4.8e-30 134.4 99 72.7
CSS0014571 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 6.3e-30 134.0 97 78.4
TAR369G0332 Trochodendron aralioides HOM05D007302 ORTHO05D009191 6.3e-30 134.0 114 67.5
TAR369G0850 Trochodendron aralioides HOM05D007302 ORTHO05D009191 6.3e-30 134.0 114 67.5
TWI09G1618 Tripterygium wilfordii HOM05D007302 ORTHO05D009191 8.3e-30 133.7 114 67.5
MD07G1001600 Malus domestica HOM05D007302 ORTHO05D009191 1.1e-29 133.3 114 66.7
FAN03G0504 Fragaria x ananassa HOM05D007302 ORTHO05D009191 1.4e-29 132.9 111 68.5
Cfa010688 Carpinus fangiana HOM05D007302 ORTHO05D009191 4.1e-29 131.3 114 67.5
Haze_03286 Corylus avellana HOM05D007302 ORTHO05D009191 4.1e-29 131.3 114 67.5
Rhsim07G0050000 Rhododendron simsii HOM05D007302 ORTHO05D009191 7.0e-29 130.6 113 67.3
DCAR_015712 Daucus carota HOM05D007302 ORTHO05D009191 1.6e-28 129.4 117 66.7
Cc02_g26960 Coffea canephora HOM05D007302 ORTHO05D009191 2.0e-28 129.0 114 67.5
Psat1g127480 Pisum sativum HOM05D007302 ORTHO05D009191 2.7e-28 128.6 110 67.3
GSVIVG01001360001 Vitis vinifera HOM05D007302 ORTHO05D009191 2.7e-28 128.6 104 70.2
Ciclev10033063m.g Citrus clementina HOM05D007302 ORTHO05D009191 3.5e-28 128.3 111 66.7
MELO3C023508.2 Cucumis melo HOM05D007302 ORTHO05D009191 3.5e-28 128.3 110 65.5
CsaV3_7G031460 Cucumis sativus L. HOM05D007302 ORTHO05D009191 3.5e-28 128.3 107 66.4
QL04p001433 Quercus lobata HOM05D007302 ORTHO05D009191 4.5e-28 127.9 113 65.5
QL04p001298 Quercus lobata HOM05D007302 ORTHO05D009191 5.9e-28 127.5 109 67.0
Ca_02882_v3 Cicer arietinum L. HOM05D007302 ORTHO05D009191 1.0e-27 126.7 110 66.4
MBI08_g23101_MAGBIO Magnolia biondii HOM05D007302 ORTHO05D009191 1.3e-27 126.3 107 68.2
Potri.001G230100 Populus trichocarpa HOM05D007302 ORTHO05D009191 1.7e-27 125.9 111 62.2
Thhalv10001676m.g Eutrema salsugineum HOM05D007302 ORTHO05D009191 2.3e-27 125.6 106 67.0
Sed0011752 Sechium edule HOM05D007302 ORTHO05D009191 2.3e-27 125.6 107 64.5
Sp4g26420 Schrenkiella parvula HOM05D007302 ORTHO05D009191 2.9e-27 125.2 103 68.0
MSTRG.28098 Avicennia marina HOM05D007302 ORTHO05D009191 3.8e-27 124.8 110 63.6
RcHm_v2.0_Chr1g0313291 Rosa chinensis HOM05D007302 ORTHO05D009191 3.8e-27 124.8 111 67.6
Cpa.g.sc189.6 Carica papaya HOM05D007302 ORTHO05D009191 5.0e-27 124.4 114 63.2
Medtr2g061420 Medicago truncatula HOM05D007302 ORTHO05D009191 5.0e-27 124.4 110 65.5
TPR.G16161 Trifolium pratense HOM05D007302 ORTHO05D009191 5.0e-27 124.4 109 66.1
ClCG09G003750 Citrullus lanatus HOM05D007302 ORTHO05D009191 6.5e-27 124.0 115 61.7
Atru.chr11.2701 Acer truncatum HOM05D007302 ORTHO05D009191 8.6e-27 123.6 113 66.4
PGSC0003DMG400028766 Solanum tuberosum HOM05D007302 ORTHO05D009191 8.6e-27 123.6 114 66.7
Sopen10g014540 Solanum pennellii HOM05D007302 ORTHO05D009191 1.1e-26 123.2 103 68.0
Aa31LG1G25940 Aethionema arabicum HOM05D007302 ORTHO05D009191 1.5e-26 122.9 102 67.6
CANSAT11G0176 Cannabis sativa HOM05D007302 ORTHO05D009191 1.9e-26 122.5 107 65.4
Gohir.D08G037201 Gossypium hirsutum HOM05D007302 ORTHO05D009191 2.5e-26 122.1 113 63.7
Gorai.004G035200 Gossypium raimondii HOM05D007302 ORTHO05D009191 2.5e-26 122.1 113 63.7
Lsat_1_v5_gn_1_87261 Lactuca sativa HOM05D007302 ORTHO05D009191 2.5e-26 122.1 110 68.2
AL4G43340 Arabidopsis lyrata HOM05D007302 ORTHO05D009191 3.3e-26 121.7 113 61.9
arahy.Tifrunner.gnm1.ann1.5U19IL Arachis hypogaea HOM05D007302 ORTHO05D009191 3.3e-26 121.7 107 63.6
Migut.N01659 Erythranthe guttata HOM05D007302 ORTHO05D009191 3.3e-26 121.7 110 60.9
Migut.O00474 Erythranthe guttata HOM05D007302 ORTHO05D009191 3.3e-26 121.7 110 60.9
Glyma.15G268700 Glycine max HOM05D007302 ORTHO05D009191 4.2e-26 121.3 114 62.3
arahy.Tifrunner.gnm1.ann1.Z7X15P Arachis hypogaea HOM05D007302 ORTHO05D009191 5.5e-26 120.9 112 60.7
CARHR139520 Cardamine hirsuta HOM05D007302 ORTHO05D009191 5.5e-26 120.9 103 66.0
ECA248G3756 Erigeron canadensis HOM05D007302 ORTHO05D009191 5.5e-26 120.9 104 68.3
Nn2g15684 Nelumbo nucifera HOM05D007302 ORTHO05D009191 7.2e-26 120.6 104 66.3
VMungo1080G0568 Vigna mungo HOM05D007302 ORTHO05D009191 7.2e-26 120.6 114 60.5
Carub.0004s2694 Capsella rubella HOM05D007302 ORTHO05D009191 1.2e-25 119.8 108 63.9
AT2G44360 Arabidopsis thaliana HOM05D007302 ORTHO05D009191 1.6e-25 119.4 112 61.6
SalBow4G1665 Salvia bowleyana HOM05D007302 ORTHO05D009191 1.6e-25 119.4 112 61.6
SalBow4G2255 Salvia bowleyana HOM05D007302 ORTHO05D009191 1.6e-25 119.4 112 61.6
Thecc.01G416400 Theobroma cacao HOM05D007302 ORTHO05D009191 1.6e-25 119.4 107 64.5
Duzib268G0295 Durio zibethinus HOM05D007302 ORTHO05D009191 2.1e-25 119.0 114 63.2
Solyc10g045350.2 Solanum lycopersicum HOM05D007302 ORTHO05D009191 2.1e-25 119.0 103 67.0
THA.LOC104817151 Tarenaya hassleriana HOM05D007302 ORTHO05D009191 2.1e-25 119.0 104 64.4
Phvul.005G041100 Phaseolus vulgaris HOM05D007302 ORTHO05D009191 2.8e-25 118.6 103 64.1
Sabra16G0137900 Salix brachista HOM05D007302 ORTHO05D009191 2.8e-25 118.6 98 65.3
A04p33280 Brassica napus HOM05D007302 ORTHO05D009191 4.7e-25 117.9 102 66.7
BraA04t18789Z Brassica rapa HOM05D007302 ORTHO05D009191 4.7e-25 117.9 102 66.7
Gohir.A08G026680 Gossypium hirsutum HOM05D007302 ORTHO05D009191 8.0e-25 117.1 105 63.8
Aqoxy1G00038 Aquilegia oxysepala HOM05D003342 ORTHO05D003861 1.0e-24 116.7 102 65.7
PSO384G4593 Papaver somniferum HOM05D007302 ORTHO05D009191 1.0e-24 116.7 114 61.4
Lj3g0023486 Lotus japonicus HOM05D007302 ORTHO05D009191 1.4e-24 116.3 110 60.9
Lj6g0025867 Lotus japonicus HOM05D007302 ORTHO05D009191 1.4e-24 116.3 110 60.9
BcaB06g29370 Brassica carinata HOM05D007302 ORTHO05D009191 1.8e-24 115.9 115 62.6
C04p70980 Brassica napus HOM05D007302 ORTHO05D009191 1.8e-24 115.9 115 62.6
BolC4t28601H Brassica oleracea HOM05D007302 ORTHO05D009191 1.8e-24 115.9 115 62.6
Eucgr.G03411 Eucalyptus grandis HOM05D007302 ORTHO05D009191 1.8e-24 115.9 103 62.1
PSO339G0269 Papaver somniferum HOM05D007302 ORTHO05D009191 4.0e-24 114.8 114 59.6
FvH4_7g00100 Fragaria vesca HOM05D007302 ORTHO05D009191 8.9e-24 113.6 92 70.7
unitig_736.g22290 Utricularia gibba HOM05D007302 ORTHO05D009191 8.9e-24 113.6 118 55.9
Lalb_Chr25g0283591 Lupinus albus HOM05D007302 ORTHO05D009191 1.2e-23 113.2 113 61.1
Peaxi162Scf00245g01315 Petunia axillaris HOM05D007302 ORTHO05D009191 1.2e-23 113.2 113 61.9
HanXRQChr15g0480631 Helianthus annuus HOM05D007302 ORTHO05D009191 2.0e-23 112.5 104 63.5
CiPaw.16G067000 Carya illinoinensis HOM05D007302 ORTHO05D009191 2.6e-23 112.1 94 68.1
Hund06578 Selenicereus undatus HOM05D007302 ORTHO05D009191 3.4e-23 111.7 114 58.8
Nn7g36009 Nelumbo nucifera HOM05D007302 ORTHO05D009191 2.2e-22 109.0 102 62.7
Sc11g0006270 Simmondsia chinensis HOM05D007302 ORTHO05D009191 3.1e-21 105.1 97 62.9
EL10Ac9g21938 Beta vulgaris HOM05D007302 ORTHO05D009191 4.1e-21 104.8 116 56.0
ATR0807G228 Amborella trichopoda HOM05D007302 ORTHO05D009191 9.2e-21 103.6 98 59.2
Dinv43937 Davidia involucrata HOM05D007302 ORTHO05D009191 9.2e-21 103.6 101 63.4
AUR62016377 Chenopodium quinoa HOM05D007302 ORTHO05D009191 7.8e-20 100.5 110 57.3
AUR62011558 Chenopodium quinoa HOM05D007302 ORTHO05D009191 1.3e-19 99.8 109 57.8
CDE07G1496 Ceratophyllum demersum HOM05D007302 ORTHO05D009191 5.6e-18 94.4 111 50.5
Oeu003126.2 Olea europaea HOM05D007302 ORTHO05D009191 1.6e-17 92.8 62 75.8
COL.COLO4_25061 Corchorus olitorius HOM05D007302 ORTHO05D009191 2.6e-15 85.5 91 58.2
SEGI_27997 Sequoiadendron giganteum HOM05D007302 ORTHO05D009191 4.9e-14 81.3 100 49.0
Os09g0553800 Oryza sativa ssp. japonica HOM05D007302 ORTHO05D009191 4.6e-12 74.7 61 62.3
HPP92_022445 Vanilla planifolia HOM05D007302 ORTHO05D009191 1.2e-09 66.6 71 54.9
DCAR_024994 Daucus carota HOM05D007302 ORTHO05D009191 6.2e-09 64.3 89 47.2
MD15G1336100 Malus domestica HOM05D007302 ORTHO05D009191 6.2e-09 64.3 55 63.6
BcaB01g03316 Brassica carinata HOM05D007302 ORTHO05D009191 3.7e-06 55.1 55 56.4
Pp3c17_19080 Physcomitrium patens HOM05D007302 ORTHO05D009191 8.3e-06 53.9 103 34.0


User provided reference genes

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