Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 0.0e+00 1982.2 1038 100.0
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 0.0e+00 1965.7 1038 99.2
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 0.0e+00 1112.4 1314 52.8
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 0.0e+00 1098.6 1324 52.1
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 1.8e-289 999.6 1460 46.6
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 9.3e-262 907.5 1319 46.5
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 1.0e-191 674.9 1001 43.9
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 4.7e-173 612.8 1369 36.1
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 6.4e-170 602.4 1381 36.1
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 5.4e-169 599.4 517 63.6
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 6.2e-165 585.9 1331 36.5
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 3.8e-162 576.6 1403 34.0
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 2.4e-161 573.9 1272 36.5
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 8.7e-159 565.5 1413 34.3
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 9.6e-158 562.0 1432 33.6
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 1.5e-155 554.7 1351 34.0
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 4.4e-155 553.1 1363 33.7
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 7.6e-155 552.4 1286 35.6
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 1.6e-152 544.7 1407 32.8
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 2.5e-150 537.3 1345 33.2
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 3.3e-150 537.0 1356 34.4
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 8.1e-149 532.3 1128 37.4
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 9.0e-148 528.9 1381 32.8
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 2.9e-146 523.9 1349 32.5
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 5.4e-145 519.6 1419 31.8
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 1.9e-142 511.1 1365 32.7
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 2.8e-141 507.3 1074 37.4
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 1.8e-140 504.6 1233 34.6
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 4.9e-138 496.5 1324 33.2
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 7.1e-137 492.7 1314 33.6
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 9.3e-137 492.3 1324 33.2
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 6.0e-136 489.6 1346 31.8
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 1.3e-133 481.9 1120 35.8
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.1e-133 481.1 1333 32.6
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 1.1e-132 478.8 1347 31.8
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.4e-132 478.4 1311 32.3
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 2.4e-132 477.6 1273 35.0
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 3.1e-132 477.2 1398 30.8
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 2.0e-131 474.6 1336 32.1
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.0e-131 474.6 1341 32.0
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 3.4e-131 473.8 1316 33.2
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.8e-124 451.4 1316 32.4
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 3.4e-123 447.2 1166 33.5
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 3.4e-123 447.2 1166 33.5
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 7.7e-123 446.0 1395 30.3
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 1.0e-122 445.7 1324 30.6
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 2.2e-122 444.5 1308 31.4
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 3.8e-122 443.7 1301 30.4
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 1.1e-121 442.2 1352 30.9
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 1.6e-120 438.3 1056 34.8
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.3e-119 434.5 1210 31.9
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 1.1e-118 432.2 1334 29.9
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 3.7e-117 427.2 1340 30.9
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 2.0e-115 421.4 1307 30.7
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 5.9e-115 419.9 1339 29.9
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 2.9e-114 417.5 1139 32.2
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 1.4e-113 415.2 1012 34.7
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 9.4e-113 412.5 1120 33.3
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 2.3e-111 407.9 1168 32.4
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 2.3e-111 407.9 1119 33.2
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 1.1e-108 399.1 1231 30.4
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 2.0e-107 394.8 1326 29.8
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 2.6e-107 394.4 1249 31.3
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 1.0e-106 392.5 1101 32.3
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.2e-106 391.3 1379 30.3
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 6.5e-106 389.8 508 44.9
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 5.5e-105 386.7 1143 32.3
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 5.5e-105 386.7 1143 32.3
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.2e-104 385.6 509 44.2
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 2.1e-104 384.8 1144 32.3
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 3.0e-103 380.9 333 61.0
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 1.3e-101 375.6 1125 32.0
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.2e-101 374.8 1123 31.6
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 2.2e-101 374.8 1306 29.5
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 4.1e-100 370.5 1115 32.2
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 1.2e-99 369.0 1210 30.1
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 1.7e-98 365.2 1336 30.1
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.7e-96 357.8 992 32.0
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 8.8e-95 352.8 453 45.5
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 2.0e-94 351.7 1125 30.8
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 3.4e-94 350.9 1241 29.2
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 3.4e-94 350.9 1064 30.2
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 8.3e-93 346.3 470 43.8
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 1.2e-91 342.4 465 43.7
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 1.0e-90 339.3 568 44.2
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 8.5e-90 336.3 1241 29.1
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 1.1e-89 335.9 518 38.2
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 6.8e-87 326.6 1108 29.4
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 3.5e-83 314.3 653 37.4
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 8.6e-82 309.7 992 29.5
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 2.5e-81 308.1 280 60.7
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 1.6e-80 305.4 1087 30.5
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 1.6e-80 305.4 1362 26.7
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 1.6e-80 305.4 823 32.1
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 6.1e-80 303.5 1333 27.5
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 8.0e-80 303.1 1324 28.5
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 1.8e-79 302.0 1244 28.5
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 7.0e-76 290.0 1350 26.1
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 2.0e-75 288.5 1253 28.2
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 1.3e-74 285.8 482 38.8
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 2.8e-72 278.1 1363 24.9
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 6.4e-69 266.9 814 29.2
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.4e-68 265.8 394 41.1
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 3.2e-68 264.6 1220 27.2
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 2.5e-65 255.0 1282 26.3
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 6.2e-64 250.4 322 52.8
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 1.4e-63 249.2 1128 25.4
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 1.4e-63 249.2 1113 26.0
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 2.7e-59 235.0 311 45.7
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 2.5e-57 228.4 408 37.0
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 4.0e-55 221.1 261 49.0
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 5.4e-52 210.7 146 75.3
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.3e-42 179.5 302 45.0
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 2.0e-38 165.6 141 56.0
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 1.7e-37 162.5 257 47.1
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.3e-34 152.9 332 40.7
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 3.8e-29 134.8 257 41.2
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 5.1e-26 124.4 150 43.3
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 4.3e-25 121.3 250 38.0
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 1.4e-23 116.3 130 49.2
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 2.6e-22 112.1 115 50.4
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 1.0e-21 110.2 283 37.1
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 6.3e-16 90.9 262 30.5
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 1.2e-14 86.7 143 45.5
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 4.5e-14 84.7 153 34.6
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 3.8e-13 81.6 80 52.5
Actinidia12356 Actinidia chinensis HOM05D005171 ORTHO05D006343 3.2e-12 78.6 56 71.4
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 6.1e-11 74.3 79 49.4
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 7.9e-11 73.9 112 36.6
Actinidia12354 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.0e-10 73.6 89 49.4
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 6.7e-10 70.9 261 28.4
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 1.9e-09 69.3 65 60.0
CDE02G3322 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 3.3e-09 68.6 129 38.8
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.6e-08 66.2 117 47.9
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 6.9e-07 60.8 100 44.0
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 9.0e-07 60.5 117 47.9


User provided reference genes

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