Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 0.0e+00 1830.5 953 100.0
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 0.0e+00 1803.5 980 96.7
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 0.0e+00 1246.9 986 70.2
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1243.8 992 68.6
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1181.4 953 68.2
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 0.0e+00 1117.8 1112 59.4
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 0.0e+00 1099.3 1159 57.3
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.3e-297 1026.5 1014 58.8
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.8e-296 1022.7 968 59.9
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 8.2e-289 997.3 990 57.3
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 2.5e-285 985.7 1018 56.8
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 7.2e-285 984.2 989 57.3
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 7.2e-285 984.2 1004 58.6
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 1.6e-284 983.0 1018 56.8
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 3.6e-284 981.9 996 56.8
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 2.3e-283 979.2 1001 55.9
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 3.4e-279 965.3 986 56.2
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.4e-279 965.3 965 58.0
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 7.7e-279 964.1 985 55.9
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 1.7e-278 963.0 996 56.2
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 2.2e-278 962.6 714 70.0
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.2e-276 956.8 987 56.6
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 1.6e-276 956.4 993 56.2
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 1.6e-276 956.4 1036 53.9
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 3.6e-276 955.3 999 56.7
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 6.1e-276 954.5 1037 53.8
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 2.3e-275 952.6 986 56.9
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 6.7e-275 951.0 1032 54.1
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 2.4e-272 942.6 939 57.5
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 3.1e-272 942.2 1036 53.1
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.1e-272 942.2 985 56.0
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 3.5e-271 938.7 990 55.3
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 4.2e-269 931.8 998 54.9
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 2.1e-268 929.5 980 55.4
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 4.0e-267 925.2 982 54.5
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 4.0e-267 925.2 980 55.2
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.5e-266 923.3 982 54.2
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 5.7e-266 921.4 983 54.4
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 2.8e-265 919.1 1014 53.3
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 4.8e-265 918.3 986 54.6
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 2.2e-262 909.4 989 54.4
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 1.5e-261 906.7 1024 51.6
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 3.2e-261 905.6 987 54.4
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 4.2e-261 905.2 986 54.4
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 5.5e-261 904.8 1041 53.7
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 1.4e-259 900.2 992 52.5
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.5e-258 896.7 1094 49.6
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 3.4e-258 895.6 995 53.4
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 3.7e-257 892.1 1004 54.6
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.4e-256 890.2 983 53.8
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 1.4e-256 890.2 975 53.7
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.4e-256 890.2 985 53.0
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.4e-256 889.4 978 52.9
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 5.4e-256 888.3 988 53.6
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 9.1e-256 887.5 979 52.8
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 5.9e-255 884.8 1038 50.8
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 7.7e-255 884.4 1004 51.6
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 1.3e-254 883.6 1000 51.8
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 1.4e-251 873.6 926 54.3
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 4.0e-251 872.1 990 52.6
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 4.9e-249 865.1 989 52.3
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 5.4e-248 861.7 1016 51.7
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 5.4e-248 861.7 984 51.8
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 3.8e-246 855.5 995 51.6
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.9e-245 853.2 996 51.2
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 3.4e-242 842.4 1025 49.8
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 7.5e-242 841.3 1002 51.6
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.3e-241 840.5 998 49.4
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.1e-240 837.4 999 50.7
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 1.4e-240 837.0 969 51.6
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 2.7e-239 832.8 979 51.3
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 1.3e-238 830.5 978 50.7
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 2.3e-238 829.7 983 50.3
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 3.9e-238 828.9 991 51.3
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.1e-237 827.4 977 50.6
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 2.5e-237 826.2 983 50.7
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 4.3e-237 825.5 953 51.5
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 1.6e-236 823.5 970 50.9
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 4.0e-235 818.9 993 49.9
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 6.8e-235 818.1 1009 48.8
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 7.5e-234 814.7 972 50.2
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.2e-233 813.1 991 51.2
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 2.4e-232 809.7 983 49.8
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 7.8e-231 804.7 974 49.1
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 6.6e-230 801.6 1000 49.9
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 1.5e-229 800.4 942 49.2
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 1.5e-229 800.4 939 48.9
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 3.3e-229 799.3 967 50.6
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 7.3e-229 798.1 1001 49.9
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 3.6e-228 795.8 676 61.2
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 7.1e-224 781.6 661 60.4
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 7.1e-224 781.6 747 56.4
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 1.6e-223 780.4 651 61.9
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 1.3e-222 777.3 965 48.5
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.7e-222 776.9 999 49.2
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 6.6e-222 775.0 992 49.1
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 5.6e-221 771.9 649 61.0
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 1.6e-220 770.4 960 48.9
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.1e-219 767.7 964 47.8
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 4.1e-216 755.7 964 48.1
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 1.2e-215 754.2 667 59.4
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 2.1e-215 753.4 983 46.7
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 3.5e-215 752.7 681 58.0
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 7.8e-215 751.5 680 58.5
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 4.3e-213 745.7 989 46.9
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 3.6e-212 742.7 979 48.4
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 4.7e-212 742.3 673 59.3
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.6e-207 727.2 969 47.6
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 8.1e-204 714.9 660 57.1
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 1.4e-203 714.1 979 45.9
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.3e-198 697.6 741 51.8
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 5.6e-189 665.6 727 50.3
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 6.9e-187 658.7 800 47.6
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.3e-177 627.9 1008 42.1
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 3.4e-170 603.2 1035 40.3
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 5.7e-157 559.3 695 44.5
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 4.5e-154 549.7 889 41.5
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 6.3e-148 529.3 971 38.6
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 3.4e-133 480.3 750 43.7
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.7e-132 478.0 643 44.8
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 9.5e-104 382.5 305 59.7
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.6e-103 381.7 555 37.3
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 6.8e-102 376.3 477 40.9
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.3e-97 361.3 835 32.1
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 4.9e-92 343.6 456 40.6
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.1e-40 172.9 115 70.4
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.7e-39 169.1 115 70.4
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 3.5e-29 134.8 368 28.3
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.3e-28 132.9 189 45.5
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.7e-28 132.5 360 36.9
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 6.3e-23 114.0 146 46.6
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 5.9e-13 80.9 106 45.3
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 1.3e-12 79.7 80 55.0
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 1.1e-11 76.6 110 44.5
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 1.1e-11 76.6 110 44.5
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 2.5e-11 75.5 106 44.3


User provided reference genes

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