Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.5e-193 678.7 364 100.0
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.5e-193 678.7 364 100.0
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.3e-125 453.8 368 72.3
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.9e-125 451.8 367 69.8
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 3.9e-122 442.2 367 70.3
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 7.8e-115 417.9 367 66.8
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 8.1e-112 407.9 367 65.4
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.1e-111 406.0 367 66.2
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 3.1e-111 406.0 364 66.8
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 2.6e-110 402.9 356 65.7
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.9e-108 396.7 363 64.7
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.5e-105 386.3 369 62.3
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 5.4e-100 368.6 370 61.6
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 2.6e-94 349.7 385 55.8
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 5.8e-94 348.6 384 55.7
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 7.6e-94 348.2 398 53.5
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 8.4e-93 344.7 377 54.6
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 3.2e-92 342.8 364 58.2
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.1e-91 340.1 387 55.3
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.0e-90 336.3 383 53.8
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 5.1e-90 335.5 382 54.5
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 2.1e-88 330.1 385 53.8
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 6.2e-88 328.6 401 53.9
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 3.1e-87 326.2 391 52.7
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.5e-86 323.9 384 53.6
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 2.0e-86 323.6 385 53.0
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 2.6e-86 323.2 389 52.4
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 3.8e-85 319.3 389 50.9
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 4.9e-85 318.9 399 52.9
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 1.1e-84 317.8 376 53.5
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 2.5e-84 316.6 404 50.5
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 2.5e-84 316.6 386 52.8
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 3.2e-84 316.2 392 51.0
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 4.2e-84 315.8 383 52.0
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 9.3e-84 314.7 386 52.6
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.2e-83 314.3 383 51.7
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.6e-83 313.9 383 51.7
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 3.5e-83 312.8 383 52.2
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 7.9e-83 311.6 361 54.3
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 1.8e-82 310.5 386 51.6
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 6.7e-82 308.5 383 51.2
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 4.3e-81 305.8 383 52.5
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 9.7e-81 304.7 394 49.2
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.6e-80 303.9 381 49.9
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.6e-80 303.9 381 49.9
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 2.2e-80 303.5 383 53.8
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 4.8e-80 302.4 389 50.9
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.4e-79 300.1 394 50.5
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.4e-79 300.1 376 50.5
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 3.1e-79 299.7 362 52.2
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 3.1e-79 299.7 362 52.2
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.3e-79 298.9 398 50.0
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.2e-78 297.7 377 49.3
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.2e-78 297.7 391 50.6
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 3.4e-78 296.2 396 50.0
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 5.9e-78 295.4 383 53.0
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 1.3e-77 294.3 383 50.4
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 1.7e-77 293.9 389 50.1
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 2.2e-77 293.5 384 50.8
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 6.5e-77 292.0 383 49.9
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 8.5e-77 291.6 376 50.3
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 9.4e-76 288.1 358 52.2
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 9.4e-76 288.1 373 50.7
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 2.3e-74 283.5 384 52.6
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 5.1e-74 282.3 380 52.6
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 8.8e-74 281.6 396 51.3
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.5e-73 280.8 380 50.0
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 9.7e-73 278.1 382 48.4
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 1.8e-71 273.9 383 49.1
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.8e-71 273.9 382 48.2
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.8e-71 273.9 384 48.2
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 2.4e-71 273.5 382 48.2
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.5e-70 270.8 390 46.4
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 2.6e-70 270.0 381 47.5
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.7e-69 267.3 367 49.6
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.1e-68 264.6 395 48.1
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.4e-68 264.2 333 51.1
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 4.2e-68 262.7 375 49.3
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 1.8e-66 257.3 367 50.1
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.1e-65 254.6 366 46.7
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 4.4e-65 252.7 384 44.8
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 5.7e-65 252.3 378 45.2
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 1.7e-64 250.8 386 44.0
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.1e-63 246.5 370 46.5
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 9.1e-63 245.0 381 45.7
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.5e-62 244.2 306 51.3
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 7.7e-62 241.9 372 48.1
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 7.7e-62 241.9 372 48.1
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.0e-61 241.5 357 46.2
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.0e-61 241.5 346 49.7
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.9e-61 240.0 364 41.5
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 3.8e-61 239.6 356 47.2
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.0e-61 239.2 346 49.4
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 8.5e-61 238.4 306 50.3
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.5e-60 236.9 346 48.8
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.1e-55 221.5 370 44.3
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 5.3e-55 219.2 277 46.9
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 1.2e-54 218.0 371 44.7
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.6e-54 217.6 307 50.2
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 3.5e-54 216.5 375 42.1
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.0e-53 214.9 328 47.3
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 9.4e-52 208.4 390 40.8
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 3.0e-50 203.4 367 40.9
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 1.5e-49 201.1 373 43.4
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 2.6e-49 200.3 373 44.0
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 4.4e-49 199.5 344 43.6
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.3e-48 198.0 379 39.8
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 3.7e-48 196.4 301 47.5
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 4.8e-48 196.1 387 39.5
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.1e-47 194.9 342 42.4
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.8e-47 194.1 365 42.7
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 4.1e-47 193.0 381 42.8
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 7.0e-47 192.2 381 40.9
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.0e-45 188.3 305 46.2
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.3e-45 188.0 338 44.1
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 4.2e-44 183.0 369 40.4
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 7.2e-44 182.2 377 38.5
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 1.4e-42 177.9 222 55.9
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.8e-42 177.6 384 39.6
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 6.8e-42 175.6 319 41.7
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 8.8e-42 175.3 383 38.9
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 1.3e-40 171.4 380 40.0
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 8.3e-40 168.7 378 38.6
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.8e-39 167.5 362 40.9
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 2.8e-35 153.7 380 37.9
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 4.7e-35 152.9 180 53.3
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 7.5e-33 145.6 295 43.4
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 9.8e-33 145.2 372 38.4
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.7e-32 143.3 389 33.7
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.4e-31 141.4 175 56.0
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 9.2e-31 138.7 318 39.3
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 4.6e-30 136.3 365 34.0
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 5.9e-30 136.0 149 58.4
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 4.0e-26 123.2 358 32.7
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 4.0e-26 123.2 313 36.7
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 5.2e-26 122.9 304 35.9
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.3e-24 118.2 323 35.6
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-24 117.9 300 37.3
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.7e-24 117.9 300 37.0
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 2.9e-24 117.1 315 35.6
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 4.9e-24 116.3 304 38.2
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.0e-21 108.6 304 36.8
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.0e-21 108.6 304 36.8
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.7e-21 107.8 295 35.9
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-21 107.8 295 36.6
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 2.3e-21 107.5 296 35.5
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 7.5e-17 92.4 296 34.8
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.7e-16 91.3 305 31.8
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.4e-15 88.2 375 29.9
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.6e-14 84.7 295 33.6
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 1.5e-12 78.2 189 37.6
Os06g0728500 Oryza sativa ssp. japonica HOM05D060560 ORTHO05D005048 1.4e-10 71.6 381 28.1
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 3.1e-10 70.5 185 35.7
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 3.1e-10 70.5 185 35.7
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 6.8e-10 69.3 314 30.3
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 6.8e-10 69.3 135 40.0
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.6e-09 67.4 123 40.7
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 3.4e-09 67.0 306 30.7
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 5.8e-09 66.2 306 30.1
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 5.8e-09 66.2 170 37.1
Sp2g30690 Schrenkiella parvula HOM05D023070 ORTHO05D023654 7.6e-09 65.9 234 32.9
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 1.7e-08 64.7 371 28.0
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 2.4e-07 60.8 375 28.8
Carub.0008s2852 Capsella rubella HOM05D023070 ORTHO05D023654 7.8e-06 55.8 269 29.0


User provided reference genes

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