Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 9.5e-125 450.3 242 100.0
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 3.2e-112 408.7 242 90.1
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 3.3e-109 398.7 243 86.8
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 8.0e-108 394.0 242 86.8
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 8.0e-108 394.0 242 85.5
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.8e-107 392.9 242 87.6
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.0e-107 391.7 242 86.0
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.6e-106 389.0 243 87.2
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 5.8e-106 387.9 244 86.1
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 5.8e-106 387.9 243 86.4
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 7.5e-106 387.5 242 86.0
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 9.8e-106 387.1 242 86.0
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.2e-105 386.0 242 84.3
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 8.3e-105 384.0 242 84.3
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 1.2e-103 380.2 242 83.1
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 1.6e-103 379.8 242 81.8
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 3.5e-103 378.6 242 84.3
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 3.5e-103 378.6 242 82.6
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.7e-102 376.3 242 81.8
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 2.3e-102 375.9 242 81.8
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 2.3e-102 375.9 241 83.4
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 3.0e-102 375.6 242 82.6
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 3.0e-102 375.6 242 82.2
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 5.1e-102 374.8 242 82.2
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 5.1e-102 374.8 242 83.1
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 1.9e-101 372.9 242 81.4
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 2.5e-101 372.5 242 81.8
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.5e-101 372.5 244 82.8
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 4.3e-101 371.7 243 83.1
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 4.3e-101 371.7 283 74.6
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 9.5e-101 370.5 242 82.6
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 2.1e-100 369.4 242 81.0
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 2.1e-100 369.4 242 81.0
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 2.8e-100 369.0 242 80.6
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 3.6e-100 368.6 242 82.2
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 6.2e-100 367.9 242 81.8
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 1.4e-99 366.7 221 87.3
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 1.8e-99 366.3 242 80.2
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 2.3e-99 365.9 242 81.0
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 5.2e-99 364.8 243 79.4
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.5e-98 363.2 242 79.3
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 2.0e-98 362.8 242 79.3
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.6e-98 362.5 242 79.3
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.4e-98 362.1 242 78.9
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 5.8e-98 361.3 243 79.0
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.3e-97 360.1 242 78.1
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 2.2e-97 359.4 242 78.9
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 4.9e-97 358.2 242 78.5
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 6.4e-97 357.8 242 78.5
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 7.1e-96 354.4 223 83.9
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.7e-95 352.4 243 77.4
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 6.0e-95 351.3 243 76.5
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 7.8e-95 350.9 244 77.0
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 7.8e-95 350.9 242 79.3
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 7.8e-95 350.9 244 76.6
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.0e-94 350.5 243 77.4
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 1.3e-94 350.1 242 76.4
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 3.0e-94 349.0 243 76.5
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 3.0e-94 349.0 243 77.8
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 3.9e-94 348.6 244 76.6
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 7.3e-93 344.4 242 76.0
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 9.6e-93 344.0 243 77.4
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 9.6e-93 344.0 245 75.5
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 1.6e-92 343.2 238 76.5
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 2.1e-92 342.8 242 74.0
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 8.1e-92 340.9 243 75.3
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 1.1e-91 340.5 245 76.7
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 1.4e-91 340.1 242 72.3
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 4.0e-91 338.6 242 71.9
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 6.8e-91 337.8 271 69.0
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 1.2e-90 337.0 222 81.1
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.2e-90 337.0 242 72.3
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 1.5e-90 336.7 242 72.3
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 2.0e-90 336.3 240 77.1
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 2.6e-90 335.9 239 76.2
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 2.6e-90 335.9 240 76.7
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 3.4e-90 335.5 233 76.4
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 3.4e-90 335.5 242 71.5
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 3.4e-90 335.5 243 72.8
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 4.4e-90 335.1 242 71.1
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 4.4e-90 335.1 242 72.3
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 5.8e-90 334.7 242 71.5
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.7e-89 333.2 221 78.7
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 2.2e-89 332.8 242 71.1
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 2.2e-89 332.8 242 71.1
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.8e-89 332.0 197 89.8
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 1.1e-88 330.5 242 70.7
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 1.4e-88 330.1 242 70.2
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 1.4e-88 330.1 243 71.2
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 1.4e-88 330.1 242 70.2
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 1.4e-88 330.1 196 88.8
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 1.4e-88 330.1 229 75.5
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 3.2e-88 328.9 224 77.2
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 4.2e-88 328.6 242 70.7
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 4.2e-88 328.6 196 88.8
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 9.3e-88 327.4 246 74.8
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 2.7e-87 325.9 242 70.2
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 3.5e-87 325.5 242 69.0
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 4.6e-87 325.1 243 73.7
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 1.0e-86 323.9 291 63.6
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 2.3e-86 322.8 247 68.4
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 6.6e-86 321.2 279 65.2
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 6.6e-86 321.2 196 86.2
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 6.6e-86 321.2 244 70.5
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 8.7e-86 320.9 245 69.4
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 1.5e-85 320.1 243 70.8
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 3.3e-85 318.9 245 69.4
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.3e-85 318.9 199 84.9
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.3e-85 318.5 199 84.4
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.3e-85 318.5 199 84.4
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 9.6e-85 317.4 243 70.0
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 1.3e-84 317.0 243 69.5
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.1e-84 316.2 204 82.4
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 2.8e-84 315.8 244 71.7
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.4e-83 313.5 258 67.4
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.8e-83 313.2 282 65.2
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 2.4e-83 312.8 196 83.2
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 5.3e-83 311.6 196 84.7
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.6e-82 309.3 196 84.2
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 2.6e-82 309.3 287 62.0
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 7.6e-82 307.8 258 66.7
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 9.9e-82 307.4 231 71.0
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 9.9e-82 307.4 238 70.2
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 1.3e-81 307.0 198 80.3
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 4.9e-81 305.1 244 67.6
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 3.2e-80 302.4 244 66.8
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.5e-77 293.5 180 85.0
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.3e-73 280.4 196 73.0
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 1.1e-72 277.3 243 65.0
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 7.9e-71 271.2 175 79.4
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 5.1e-70 268.5 221 68.3
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 5.5e-64 248.4 188 70.7
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.3e-61 239.2 196 69.9
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 8.2e-60 234.6 224 59.8
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 2.3e-54 216.5 155 73.5
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 3.9e-54 215.7 135 80.7
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 1.7e-49 200.3 155 69.0
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.1e-45 187.6 168 63.7
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 3.3e-45 186.0 131 73.3
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 6.3e-44 181.8 149 69.1
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 1.9e-40 170.2 112 79.5
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.3e-36 155.2 238 47.9
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 5.0e-33 145.6 223 44.4
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 1.1e-32 144.4 198 42.4
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 5.7e-29 132.1 203 36.9
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 5.3e-27 125.6 236 41.5
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 7.0e-27 125.2 208 37.0
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 4.5e-26 122.5 99 65.7
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 1.0e-25 121.3 82 74.4
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 5.7e-21 105.5 214 32.7
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 1.3e-20 104.4 214 33.6
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 7.0e-19 98.6 179 43.6
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 2.2e-17 93.6 63 82.5
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 4.4e-13 79.3 65 61.5
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 2.4e-11 73.6 64 65.6
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 5.9e-10 68.9 215 28.8
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 2.3e-06 57.0 41 75.6
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 3.0e-06 56.6 40 77.5


User provided reference genes

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