Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016928 Camellia sinensis var. sinensis HOM05D004588 ORTHO05D005365 8.2e-25 116.3 61 100.0
Actinidia38537 Actinidia chinensis HOM05D004588 ORTHO05D005365 1.9e-13 78.6 49 81.6
Dinv31498 Davidia involucrata HOM05D004588 ORTHO05D005365 2.1e-12 75.1 49 81.6
Rhsim01G0103600 Rhododendron simsii HOM05D004588 ORTHO05D005365 1.5e-10 68.9 49 73.5
RhsimUnG0238800 Rhododendron simsii HOM05D004588 ORTHO05D005365 1.5e-10 68.9 49 73.5
vmacro20736 Vaccinium macrocarpon HOM05D004588 ORTHO05D005365 1.5e-10 68.9 50 74.0
Hma1.2p1_0391F.1_g142890 Hydrangea macrophylla HOM05D004588 ORTHO05D005365 2.0e-10 68.6 52 75.0
Dinv12627 Davidia involucrata HOM05D004588 ORTHO05D005365 1.3e-09 65.9 49 67.3
Glyma.01G125100 Glycine max HOM05D004588 ORTHO05D005365 3.7e-09 64.3 47 74.5
TAR626G1307 Trochodendron aralioides HOM05D004588 ORTHO05D005365 3.7e-09 64.3 49 73.5
Gorai.009G295100 Gossypium raimondii HOM05D004588 ORTHO05D005365 6.3e-09 63.5 49 67.3
Gohir.A05G279932 Gossypium hirsutum HOM05D004588 ORTHO05D005365 8.2e-09 63.2 49 67.3
Gohir.D05G281600 Gossypium hirsutum HOM05D004588 ORTHO05D005365 1.4e-08 62.4 49 67.3
Hund11851 Selenicereus undatus HOM05D004588 ORTHO05D005365 3.1e-08 61.2 49 67.3
Nitab4.5_0004827g0050 Nicotiana tabacum HOM05D004588 ORTHO05D005365 4.1e-08 60.8 49 65.3
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 5.3e-08 60.5 40 72.5
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 5.3e-08 60.5 53 66.0
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 5.3e-08 60.5 53 66.0
GSVIVG01034226001 Vitis vinifera HOM05D004588 ORTHO05D005365 5.3e-08 60.5 36 83.3
VMungo1383G1103 Vigna mungo HOM05D004588 ORTHO05D005365 9.1e-08 59.7 47 72.3
CsaV3_4G009740 Cucumis sativus L. HOM05D004588 ORTHO05D005365 1.2e-07 59.3 49 67.3
arahy.Tifrunner.gnm1.ann1.HQTU6U Arachis hypogaea HOM05D004588 ORTHO05D005365 1.5e-07 58.9 31 87.1
ClCG07G006010 Citrullus lanatus HOM05D004588 ORTHO05D005365 1.5e-07 58.9 49 67.3
GSVIVG01034243001 Vitis vinifera HOM05D004588 ORTHO05D005365 2.0e-07 58.5 36 80.6
COL.COLO4_31171 Corchorus olitorius HOM05D004588 ORTHO05D005365 2.6e-07 58.2 50 66.0
MELO3C026421.2 Cucumis melo HOM05D004588 ORTHO05D005365 2.6e-07 58.2 49 67.3
ECA238G1741 Erigeron canadensis HOM05D004588 ORTHO05D005365 2.6e-07 58.2 41 75.6
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 3.4e-07 57.8 43 69.8
Glyma.07G155900 Glycine max HOM05D004588 ORTHO05D005365 3.4e-07 57.8 42 71.4
Lalb_Chr06g0169291 Lupinus albus HOM05D004588 ORTHO05D005365 3.4e-07 57.8 47 68.1
Manes.01G180900 Manihot esculenta HOM05D004588 ORTHO05D005365 3.4e-07 57.8 49 63.3
Medtr4g014360 Medicago truncatula HOM05D004588 ORTHO05D005365 3.4e-07 57.8 50 68.0
MSTRG.19411 Avicennia marina HOM05D004588 ORTHO05D005365 4.5e-07 57.4 48 68.8
CiPaw.01G111800 Carya illinoinensis HOM05D004588 ORTHO05D005365 4.5e-07 57.4 34 85.3
Duzib248G0295 Durio zibethinus HOM05D004588 ORTHO05D005365 4.5e-07 57.4 49 61.2
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 4.5e-07 57.4 45 66.7
Nn5g26959 Nelumbo nucifera HOM05D004588 ORTHO05D005365 4.5e-07 57.4 40 72.5
Nitab4.5_0000073g0450 Nicotiana tabacum HOM05D004588 ORTHO05D005365 4.5e-07 57.4 54 57.4
Thecc.02G231300 Theobroma cacao HOM05D004588 ORTHO05D005365 4.5e-07 57.4 49 63.3
Hund04573 Selenicereus undatus HOM05D004588 ORTHO05D005365 5.9e-07 57.0 49 65.3
TAR383G0700 Trochodendron aralioides HOM05D004588 ORTHO05D005365 5.9e-07 57.0 50 64.0
Atru.chr8.89 Acer truncatum HOM05D004588 ORTHO05D005365 7.7e-07 56.6 43 67.4
Potri.006G080200 Populus trichocarpa HOM05D004588 ORTHO05D005365 7.7e-07 56.6 49 65.3
QL11p006982 Quercus lobata HOM05D004588 ORTHO05D005365 7.7e-07 56.6 42 69.0
SalBow6G0192 Salvia bowleyana HOM05D004588 ORTHO05D005365 7.7e-07 56.6 32 84.4
Sp3g16980 Schrenkiella parvula HOM05D004588 ORTHO05D005365 7.7e-07 56.6 49 59.2
TWI74G0566 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 7.7e-07 56.6 47 66.0
Manes.03G098816 Manihot esculenta HOM05D004588 ORTHO05D005365 1.0e-06 56.2 50 62.0
Medtr6g005030 Medicago truncatula HOM05D004588 ORTHO05D005365 1.0e-06 56.2 50 66.0
SGA_v2.0_scaffold21G09593 Striga asiatica HOM05D004588 ORTHO05D005365 1.0e-06 56.2 48 58.3
SGA_v2.0_scaffold272G46369 Striga asiatica HOM05D004588 ORTHO05D005365 1.0e-06 56.2 48 58.3
Zm00001eb176930 Zea mays HOM05D004588 ORTHO05D005365 1.0e-06 56.2 43 60.5
Carub.0001s3858 Capsella rubella HOM05D004588 ORTHO05D005365 1.3e-06 55.8 33 78.8
TWI53G1560 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 1.3e-06 55.8 47 63.8
Aa31LG10G4590 Aethionema arabicum HOM05D004588 ORTHO05D005365 1.7e-06 55.5 49 61.2
Cpa.g.sc91.70 Carica papaya HOM05D004588 ORTHO05D005365 1.7e-06 55.5 47 68.1
HanXRQChr06g0184041 Helianthus annuus HOM05D004588 ORTHO05D005365 1.7e-06 55.5 49 67.3
Sp1g36240 Schrenkiella parvula HOM05D004588 ORTHO05D005365 1.7e-06 55.5 33 75.8
SEGI_30295 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 1.7e-06 55.5 35 74.3
SEGI_39311 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 1.7e-06 55.5 35 74.3
BcaNung06952 Brassica carinata HOM05D004588 ORTHO05D005365 2.2e-06 55.1 47 57.4
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 2.2e-06 55.1 33 78.8
Thhalv10011874m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 2.2e-06 55.1 29 86.2
Prupe.6G124600 Prunus persica HOM05D004588 ORTHO05D005365 2.2e-06 55.1 30 86.7
Ah.07g207540 Amaranthus hybridus HOM05D004588 ORTHO05D005365 2.9e-06 54.7 49 63.3
arahy.Tifrunner.gnm1.ann1.7DYL36 Arachis hypogaea HOM05D004588 ORTHO05D005365 2.9e-06 54.7 43 65.1
arahy.Tifrunner.gnm1.ann1.7K7KM4 Arachis hypogaea HOM05D004588 ORTHO05D005365 2.9e-06 54.7 43 65.1
Sed0013564 Sechium edule HOM05D004588 ORTHO05D005365 2.9e-06 54.7 49 61.2
Phvul.008G093100 Phaseolus vulgaris HOM05D004588 ORTHO05D005365 3.8e-06 54.3 31 87.1
AL3G32270 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 5.0e-06 53.9 52 59.6
BolC8t47225H Brassica oleracea HOM05D004588 ORTHO05D005365 5.0e-06 53.9 47 57.4
MD03G1139600 Malus domestica HOM05D004588 ORTHO05D005365 5.0e-06 53.9 41 65.9
Potri.018G150100 Populus trichocarpa HOM05D004588 ORTHO05D005365 5.0e-06 53.9 49 61.2
RcHm_v2.0_Chr7g0235191 Rosa chinensis HOM05D004588 ORTHO05D005365 5.0e-06 53.9 38 65.8
TPR.G5271 Trifolium pratense HOM05D004588 ORTHO05D005365 5.0e-06 53.9 42 71.4
Aa31LG8G5720 Aethionema arabicum HOM05D004588 ORTHO05D005365 6.5e-06 53.5 50 58.0
BcaC07g37057 Brassica carinata HOM05D004588 ORTHO05D005365 6.5e-06 53.5 53 52.8
Thhalv10021804m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 6.5e-06 53.5 43 58.1
Glyma.18G206300 Glycine max HOM05D004588 ORTHO05D005365 6.5e-06 53.5 42 69.0
Lalb_Chr02g0150391 Lupinus albus HOM05D004588 ORTHO05D005365 6.5e-06 53.5 47 63.8
PGR044G1699 Punica granatum HOM05D004588 ORTHO05D005365 6.5e-06 53.5 39 71.8
AL1G56520 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 8.5e-06 53.1 33 75.8
AL1G56550 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 8.5e-06 53.1 33 75.8
AT3G18880 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 8.5e-06 53.1 52 57.7
A08p03610 Brassica napus HOM05D004588 ORTHO05D005365 8.5e-06 53.1 35 71.4
C08p04210 Brassica napus HOM05D004588 ORTHO05D005365 8.5e-06 53.1 33 75.8
BraA05t21909Z Brassica rapa HOM05D004588 ORTHO05D005365 8.5e-06 53.1 49 57.1
MD11G1162200 Malus domestica HOM05D004588 ORTHO05D005365 8.5e-06 53.1 42 64.3
HPP92_001963 Vanilla planifolia HOM05D004588 ORTHO05D005365 8.5e-06 53.1 30 76.7
Zm00001eb041040 Zea mays HOM05D004588 ORTHO05D005365 8.5e-06 53.1 43 62.8


User provided reference genes

Program Settings