Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.6e-174 615.9 294 100.0
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.8e-165 585.9 294 96.6
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 3.8e-144 515.0 322 77.3
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 3.8e-144 515.0 317 78.2
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 1.2e-142 510.0 317 77.3
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 8.8e-141 503.8 315 76.8
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 7.9e-134 480.7 316 73.4
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 2.3e-133 479.2 316 74.1
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 3.9e-133 478.4 367 64.9
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 7.4e-132 474.2 316 71.8
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 4.8e-131 471.5 313 71.9
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 6.3e-131 471.1 315 71.7
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 6.3e-131 471.1 297 74.7
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 8.2e-131 470.7 315 70.2
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.8e-130 469.5 315 70.8
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 2.4e-130 469.2 315 71.7
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 7.0e-130 467.6 315 71.1
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.2e-129 466.8 316 69.9
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 1.6e-129 466.5 316 70.9
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 2.0e-129 466.1 317 68.1
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 3.5e-129 465.3 315 69.8
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 7.7e-129 464.2 318 68.2
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 7.7e-129 464.2 319 69.3
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.0e-128 463.8 319 69.9
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.7e-128 463.0 319 69.6
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.7e-128 463.0 315 68.9
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 2.2e-128 462.6 316 69.6
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 3.8e-128 461.8 315 68.9
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 6.5e-128 461.1 314 69.7
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 8.5e-128 460.7 319 69.3
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 1.1e-127 460.3 316 69.3
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.5e-127 459.9 316 69.9
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.9e-127 459.5 315 69.2
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 9.4e-127 457.2 315 69.5
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 9.4e-127 457.2 315 68.6
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 1.2e-126 456.8 315 67.9
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 1.2e-126 456.8 315 69.8
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 2.1e-126 456.1 316 69.3
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.7e-126 455.7 316 69.6
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 3.6e-126 455.3 316 69.9
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 8.0e-126 454.1 312 69.9
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 1.0e-125 453.8 318 69.5
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 1.4e-125 453.4 369 62.3
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 3.0e-125 452.2 318 69.2
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 4.0e-125 451.8 315 69.2
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 4.0e-125 451.8 315 69.2
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 4.0e-125 451.8 317 69.4
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 6.7e-125 451.1 315 68.9
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 6.7e-125 451.1 315 68.9
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 8.8e-125 450.7 321 68.2
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 1.1e-124 450.3 316 68.7
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.1e-124 450.3 315 67.9
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 1.5e-124 449.9 321 67.3
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 2.0e-124 449.5 315 67.9
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 2.6e-124 449.1 317 69.1
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.6e-124 449.1 316 68.0
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.6e-124 449.1 316 65.8
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 4.4e-124 448.4 313 68.7
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 5.7e-124 448.0 316 67.7
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.7e-123 446.4 314 65.3
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.7e-123 446.4 316 65.8
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.7e-123 446.4 316 65.5
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 2.8e-123 445.7 293 71.0
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 3.7e-123 445.3 303 71.3
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 4.8e-123 444.9 316 67.1
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 4.8e-123 444.9 315 66.7
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 6.3e-123 444.5 313 68.1
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 8.2e-123 444.1 322 64.3
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 1.1e-122 443.7 337 64.4
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 1.4e-122 443.4 314 65.3
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.8e-122 443.0 313 68.1
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 3.1e-122 442.2 293 70.3
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.1e-122 441.8 316 64.2
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 9.1e-122 440.7 315 66.7
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.6e-121 439.9 316 64.2
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 2.2e-120 436.0 319 67.4
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 1.1e-119 433.7 314 65.6
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 1.1e-119 433.7 315 65.7
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 1.5e-119 433.3 315 65.4
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.5e-119 433.3 318 66.0
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 1.5e-119 433.3 315 65.7
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.9e-119 433.0 313 68.4
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 2.5e-119 432.6 318 66.7
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 7.2e-119 431.0 316 66.1
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 7.2e-119 431.0 320 65.6
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 9.4e-119 430.6 314 65.3
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 9.4e-119 430.6 313 66.8
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.6e-118 428.7 316 65.2
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 8.0e-118 427.6 319 65.8
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.4e-117 426.8 315 65.7
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.4e-117 426.8 307 66.4
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 1.8e-117 426.4 315 67.3
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.8e-117 426.4 314 65.9
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 4.0e-117 425.2 315 64.4
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 2.0e-116 422.9 332 62.0
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.6e-116 422.5 307 65.5
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 7.5e-116 421.0 317 65.3
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 2.8e-115 419.1 315 64.1
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 4.8e-115 418.3 306 63.7
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 8.3e-115 417.5 314 65.0
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 8.3e-115 417.5 314 65.0
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 8.3e-115 417.5 300 64.7
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 8.3e-115 417.5 314 64.3
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.1e-114 417.2 317 65.0
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 2.4e-114 416.0 314 64.0
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 9.1e-114 414.1 314 64.6
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.2e-113 413.7 314 64.0
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 2.0e-113 412.9 314 64.6
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 4.5e-113 411.8 314 64.0
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 4.5e-113 411.8 314 64.0
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 4.5e-113 411.8 314 64.0
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 7.7e-113 411.0 393 53.9
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 1.0e-112 410.6 314 63.7
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 1.0e-112 410.6 314 63.1
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 8.5e-112 407.5 314 63.7
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 8.5e-112 407.5 292 63.4
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 3.6e-110 402.1 333 59.5
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 8.8e-109 397.5 320 60.9
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 1.5e-108 396.7 275 69.8
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.4e-106 390.2 396 52.0
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 1.1e-103 380.6 324 56.2
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 9.5e-103 377.5 319 60.5
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 4.7e-102 375.2 266 68.0
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 4.7e-102 375.2 289 63.3
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 6.8e-101 371.3 294 58.8
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.8e-101 371.3 316 57.0
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 9.8e-100 367.5 337 53.4
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 6.4e-99 364.8 279 65.6
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 8.6e-96 354.4 321 54.2
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.4e-93 347.1 315 52.4
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 2.3e-93 346.3 332 53.6
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 2.6e-92 342.8 321 55.5
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 3.2e-90 335.9 315 53.3
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 3.0e-88 329.3 317 50.8
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 3.9e-88 328.9 300 57.0
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 9.8e-84 314.3 242 62.0
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 3.5e-81 305.8 290 52.8
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 1.6e-78 297.0 353 43.3
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 2.9e-75 286.2 225 62.7
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 5.4e-74 282.0 209 62.7
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.1e-65 253.4 281 50.2
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 2.3e-64 250.0 199 60.8
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 8.7e-64 248.1 161 71.4
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 8.1e-62 241.5 162 71.6
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 4.0e-61 239.2 162 69.1
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 1.2e-57 227.6 144 72.9
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 4.6e-57 225.7 151 70.9
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 3.0e-56 223.0 134 73.1
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 3.4e-52 209.5 166 63.3
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 3.9e-40 169.5 124 64.5
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 1.2e-33 147.9 89 78.7
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.3e-32 144.4 110 59.1
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.5e-31 140.2 147 48.3
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 4.5e-28 129.4 105 61.9
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.9e-26 124.0 90 63.3
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 3.0e-24 116.7 73 72.6
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 3.0e-24 116.7 66 77.3
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 2.6e-23 113.6 75 68.0
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 9.7e-23 111.7 124 47.6
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.3e-22 111.3 75 62.7
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 2.4e-21 107.1 95 54.7
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 2.2e-19 100.5 92 52.2
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 6.5e-19 99.0 113 44.2
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 6.7e-16 89.0 72 59.7
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 5.0e-11 72.8 43 72.1
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 6.1e-09 65.9 55 56.4
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 3.3e-07 60.1 57 50.9
PGR102G2199 Punica granatum HOM05D004085 ORTHO05D000487 6.3e-06 55.8 69 42.0
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 8.2e-06 55.5 76 44.7


User provided reference genes

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