Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 4.9e-93 344.4 163 100.0
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.3e-73 278.5 133 97.7
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.6e-72 276.2 140 92.9
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 4.8e-72 274.6 140 92.9
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 6.9e-71 270.8 140 92.1
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 9.0e-71 270.4 149 85.2
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 1.5e-70 269.6 140 91.4
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 4.5e-70 268.1 133 93.2
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 5.9e-70 267.7 133 92.5
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 5.9e-70 267.7 133 94.0
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 1.0e-69 266.9 140 89.3
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 1.0e-69 266.9 140 90.0
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 1.0e-69 266.9 140 90.0
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.3e-69 266.5 140 89.3
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 1.3e-69 266.5 135 90.4
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 1.3e-69 266.5 140 90.7
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 1.3e-69 266.5 140 90.7
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 1.3e-69 266.5 133 93.2
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 1.3e-69 266.5 140 90.0
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 1.3e-69 266.5 140 90.0
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.7e-69 266.2 140 89.3
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 1.7e-69 266.2 140 90.0
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 1.7e-69 266.2 140 89.3
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 2.2e-69 265.8 140 89.3
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 2.9e-69 265.4 133 94.0
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 2.9e-69 265.4 133 91.0
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 2.9e-69 265.4 140 89.3
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 2.9e-69 265.4 133 92.5
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 3.8e-69 265.0 133 92.5
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 3.8e-69 265.0 133 91.7
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 3.8e-69 265.0 132 92.4
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 5.0e-69 264.6 133 92.5
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 5.0e-69 264.6 140 89.3
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 6.5e-69 264.2 140 88.6
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 6.5e-69 264.2 140 88.6
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 8.5e-69 263.8 133 91.7
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 8.5e-69 263.8 143 88.8
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 8.5e-69 263.8 140 89.3
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 1.1e-68 263.5 135 88.1
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 1.1e-68 263.5 135 88.1
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.4e-68 263.1 133 91.7
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 1.4e-68 263.1 140 88.6
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 1.9e-68 262.7 140 87.1
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.9e-68 262.7 140 87.1
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.9e-68 262.7 140 87.1
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 1.9e-68 262.7 140 89.3
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.5e-68 262.3 140 87.1
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 2.5e-68 262.3 133 91.7
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 3.2e-68 261.9 133 91.7
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 3.2e-68 261.9 133 91.7
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 3.2e-68 261.9 133 91.7
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.2e-68 261.9 132 90.9
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 4.2e-68 261.5 140 87.9
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 4.2e-68 261.5 133 90.2
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 5.5e-68 261.2 133 91.0
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.5e-68 261.2 140 88.6
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 5.5e-68 261.2 133 90.2
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 7.2e-68 260.8 133 91.0
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 7.2e-68 260.8 133 91.0
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 1.2e-67 260.0 133 91.7
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.2e-67 260.0 140 88.6
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 1.2e-67 260.0 133 87.2
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 1.2e-67 260.0 133 89.5
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.6e-67 259.6 133 89.5
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 1.6e-67 259.6 133 89.5
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.6e-67 259.6 134 90.3
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 2.1e-67 259.2 133 91.0
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 2.1e-67 259.2 133 88.7
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 2.7e-67 258.8 133 90.2
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 2.7e-67 258.8 132 89.4
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 3.6e-67 258.5 133 90.2
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.6e-67 258.5 140 87.1
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 3.6e-67 258.5 133 90.2
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 3.6e-67 258.5 140 87.1
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 4.6e-67 258.1 135 85.9
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 6.1e-67 257.7 140 85.0
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 6.1e-67 257.7 135 85.9
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 6.1e-67 257.7 133 90.2
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 6.1e-67 257.7 140 87.1
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 6.1e-67 257.7 132 89.4
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 7.9e-67 257.3 131 93.1
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 1.0e-66 256.9 134 90.3
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.0e-66 256.9 133 89.5
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 1.0e-66 256.9 140 86.4
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 1.0e-66 256.9 133 90.2
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.4e-66 256.5 140 86.4
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 3.0e-66 255.4 133 88.7
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 3.9e-66 255.0 140 86.4
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 8.8e-66 253.8 140 82.9
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.0e-65 252.7 148 81.8
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 3.3e-65 251.9 133 86.5
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 4.3e-65 251.5 133 86.5
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 5.7e-65 251.1 133 86.5
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 7.4e-65 250.8 150 80.0
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 7.4e-65 250.8 136 83.1
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 1.7e-64 249.6 140 82.9
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 2.8e-64 248.8 133 84.2
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 3.7e-64 248.4 134 88.1
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 4.8e-64 248.1 133 84.2
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 4.8e-64 248.1 133 84.2
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 4.8e-64 248.1 133 84.2
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 4.8e-64 248.1 133 84.2
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 4.8e-64 248.1 133 84.2
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 4.8e-64 248.1 133 84.2
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 6.3e-64 247.7 133 83.5
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 6.3e-64 247.7 141 85.1
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 8.2e-64 247.3 133 83.5
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 8.2e-64 247.3 133 84.2
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 8.2e-64 247.3 133 84.2
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 8.2e-64 247.3 133 84.2
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 1.1e-63 246.9 133 83.5
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.1e-63 246.9 133 85.7
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 1.1e-63 246.9 133 85.0
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 1.1e-63 246.9 140 83.6
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.4e-63 246.5 140 83.6
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.4e-63 246.5 133 84.2
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 1.4e-63 246.5 133 87.2
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 2.4e-63 245.7 133 83.5
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 2.4e-63 245.7 133 83.5
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 2.4e-63 245.7 133 83.5
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 2.4e-63 245.7 133 83.5
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 2.4e-63 245.7 133 83.5
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 2.4e-63 245.7 133 83.5
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 2.4e-63 245.7 134 85.1
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.1e-63 245.4 140 83.6
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 4.1e-63 245.0 140 82.1
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 4.1e-63 245.0 172 71.5
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 5.3e-63 244.6 133 82.7
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 5.3e-63 244.6 133 82.0
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 6.9e-63 244.2 133 82.7
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 6.9e-63 244.2 133 82.7
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 9.1e-63 243.8 133 82.7
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 1.5e-62 243.0 134 85.1
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 2.6e-62 242.3 137 83.9
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 2.6e-62 242.3 140 81.4
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 3.4e-62 241.9 173 69.9
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 4.5e-62 241.5 135 80.7
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.0e-61 240.4 134 82.1
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 1.3e-61 240.0 136 80.9
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 1.7e-61 239.6 123 91.9
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 2.2e-61 239.2 132 81.8
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 2.9e-61 238.8 133 81.2
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 2.9e-61 238.8 133 82.7
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 5.0e-61 238.0 134 82.1
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 6.5e-61 237.7 132 81.8
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 1.1e-60 236.9 140 78.6
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 1.8e-58 229.6 134 76.9
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 8.8e-58 227.3 116 89.7
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 1.5e-57 226.5 136 76.5
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 4.4e-57 224.9 138 80.4
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 1.7e-56 223.0 136 75.0
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 6.3e-56 221.1 116 87.1
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 8.5e-53 210.7 133 71.4
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 4.2e-52 208.4 116 81.9
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 9.4e-52 207.2 117 82.1
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.1e-51 206.1 103 88.3
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 4.7e-51 204.9 136 65.4
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 4.7e-51 204.9 135 69.6
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 2.4e-47 192.6 104 88.5
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 5.3e-47 191.4 141 58.9
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 9.4e-44 180.6 132 68.2
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.8e-42 176.4 123 74.8
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 6.3e-40 167.9 125 68.8
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 1.1e-39 167.2 86 91.9
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 3.1e-39 165.6 87 92.0
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 8.8e-34 147.5 72 91.7
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 3.1e-31 139.0 69 88.4
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 3.8e-29 132.1 71 83.1
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 2.4e-23 112.8 80 70.0
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.0e-22 109.8 63 82.5
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 5.0e-21 105.1 85 65.9
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 4.3e-20 102.1 54 87.0
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 5.2e-18 95.1 44 88.6
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 6.2e-11 71.6 113 38.9
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 2.3e-10 69.7 37 78.4
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 3.1e-10 69.3 30 93.3
CSS0019757 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D012716 6.4e-08 61.6 67 49.3


User provided reference genes

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