Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016917 Camellia sinensis var. sinensis HOM05D037094 ORTHO05D000235 1.7e-91 339.3 176 100.0
CSS0002399 Camellia sinensis var. sinensis HOM05D037094 ORTHO05D000235 1.8e-64 249.6 161 84.5
CSS0037430 Camellia sinensis var. sinensis HOM05D037094 ORTHO05D112262 2.2e-38 162.9 141 68.8
CSS0001635 Camellia sinensis var. sinensis HOM05D000364 ORTHO05D000235 2.5e-18 96.3 56 89.3
Dinv07057 Davidia involucrata HOM05D000364 ORTHO05D000235 2.6e-15 86.3 56 75.0
Actinidia27112 Actinidia chinensis HOM05D000364 ORTHO05D000235 7.6e-15 84.7 56 73.2
Glyma.02G137400 Glycine max HOM05D000364 ORTHO05D000235 1.3e-14 84.0 65 67.7
Rhsim02G0084200 Rhododendron simsii HOM05D000364 ORTHO05D000235 1.7e-14 83.6 56 75.0
Glyma.07G208000 Glycine max HOM05D000364 ORTHO05D000235 2.2e-14 83.2 65 67.7
vmacro00699 Vaccinium macrocarpon HOM05D000364 ORTHO05D000235 2.9e-14 82.8 56 69.6
Phvul.003G296500 Phaseolus vulgaris HOM05D000364 ORTHO05D000235 6.4e-14 81.6 65 66.2
VMungo0251G2434 Vigna mungo HOM05D000364 ORTHO05D000235 6.4e-14 81.6 65 66.2
Dinv33204 Davidia involucrata HOM05D000364 ORTHO05D000235 8.4e-14 81.3 56 71.4
ECA248G0252 Erigeron canadensis HOM05D000364 ORTHO05D000235 8.4e-14 81.3 56 73.2
Lsat_1_v5_gn_1_74780 Lactuca sativa HOM05D000364 ORTHO05D000235 1.1e-13 80.9 56 71.4
Atru.chr4.1418 Acer truncatum HOM05D000364 ORTHO05D000235 1.4e-13 80.5 66 66.7
FAN07G2907 Fragaria x ananassa HOM05D000364 ORTHO05D000235 1.9e-13 80.1 64 65.6
Prupe.1G207100 Prunus persica HOM05D000364 ORTHO05D000235 1.9e-13 80.1 64 65.6
Hma1.2p1_0150F.1_g066830 Hydrangea macrophylla HOM05D000364 ORTHO05D000235 2.4e-13 79.7 56 69.6
Oeu016611.2 Olea europaea HOM05D000364 ORTHO05D000235 3.2e-13 79.3 56 69.6
FvH4_4g10460 Fragaria vesca HOM05D000364 ORTHO05D000235 4.2e-13 79.0 64 64.1
FAN12G2348 Fragaria x ananassa HOM05D000364 ORTHO05D000235 4.2e-13 79.0 64 64.1
FAN12G3809 Fragaria x ananassa HOM05D000364 ORTHO05D000235 4.2e-13 79.0 64 64.1
TWI15G1181 Tripterygium wilfordii HOM05D000364 ORTHO05D000235 4.2e-13 79.0 56 73.2
Manes.11G129300 Manihot esculenta HOM05D000364 ORTHO05D000235 5.4e-13 78.6 56 73.2
RcHm_v2.0_Chr4g0405961 Rosa chinensis HOM05D000364 ORTHO05D000235 5.4e-13 78.6 64 64.1
Ciclev10022741m.g Citrus clementina HOM05D000364 ORTHO05D000235 1.2e-12 77.4 66 63.6
FAN17G1593 Fragaria x ananassa HOM05D000364 ORTHO05D000235 1.2e-12 77.4 64 62.5
FAN22G0452 Fragaria x ananassa HOM05D000364 ORTHO05D000235 1.2e-12 77.4 64 62.5
Cc03_g14090 Coffea canephora HOM05D000364 ORTHO05D000235 1.6e-12 77.0 56 66.1
TWI63G0752 Tripterygium wilfordii HOM05D000364 ORTHO05D000235 2.7e-12 76.3 55 72.7
MELO3C017761.2 Cucumis melo HOM05D000364 ORTHO05D000235 4.6e-12 75.5 61 63.9
CsaV3_4G002800 Cucumis sativus L. HOM05D000364 ORTHO05D000235 4.6e-12 75.5 61 63.9
Manes.04G035800 Manihot esculenta HOM05D000364 ORTHO05D000235 4.6e-12 75.5 56 69.6
arahy.Tifrunner.gnm1.ann1.5MB0W9 Arachis hypogaea HOM05D000364 ORTHO05D000235 7.9e-12 74.7 66 63.6
Lj4g0009128 Lotus japonicus HOM05D000364 ORTHO05D000235 7.9e-12 74.7 65 60.0
arahy.Tifrunner.gnm1.ann1.VF7XEH Arachis hypogaea HOM05D000364 ORTHO05D000235 1.0e-11 74.3 65 64.6
arahy.Tifrunner.gnm1.ann1.X9QM54 Arachis hypogaea HOM05D000364 ORTHO05D000235 1.0e-11 74.3 65 64.6
HanXRQChr11g0343171 Helianthus annuus HOM05D000364 ORTHO05D000235 1.0e-11 74.3 56 67.9
Potri.013G126800 Populus trichocarpa HOM05D000364 ORTHO05D000235 1.0e-11 74.3 56 67.9
Sabra13G0105900 Salix brachista HOM05D000364 ORTHO05D000235 1.0e-11 74.3 56 67.9
Gorai.011G135700 Gossypium raimondii HOM05D000364 ORTHO05D000235 1.3e-11 73.9 68 57.4
HanXRQChr01g0023161 Helianthus annuus HOM05D000364 ORTHO05D000235 1.3e-11 73.9 56 66.1
MD04G1049000 Malus domestica HOM05D000364 ORTHO05D000235 1.3e-11 73.9 56 67.9
COL.COLO4_08139 Corchorus olitorius HOM05D000364 ORTHO05D000235 1.8e-11 73.6 56 67.9
Migut.N03067 Erythranthe guttata HOM05D000364 ORTHO05D000235 1.8e-11 73.6 71 52.1
Lj6A166T9 Lonicera japonica HOM05D000364 ORTHO05D000235 1.8e-11 73.6 58 62.1
TWI38G1405 Tripterygium wilfordii HOM05D000364 ORTHO05D000235 2.3e-11 73.2 56 69.6
Potri.019G112000 Populus trichocarpa HOM05D000364 ORTHO05D000235 3.0e-11 72.8 56 66.1
QL10p055765 Quercus lobata HOM05D000364 ORTHO05D000235 3.0e-11 72.8 64 64.1
GSVIVG01038142001 Vitis vinifera HOM05D000364 ORTHO05D000235 3.0e-11 72.8 56 62.5
Duzib212G0191 Durio zibethinus HOM05D000364 ORTHO05D000235 3.9e-11 72.4 56 67.9
MSTRG.22031 Avicennia marina HOM05D000364 ORTHO05D000235 5.1e-11 72.0 56 64.3
Gohir.A10G143800 Gossypium hirsutum HOM05D000364 ORTHO05D000235 5.1e-11 72.0 67 58.2
PGR042G2400 Punica granatum HOM05D000364 ORTHO05D000235 5.1e-11 72.0 56 66.1
MSTRG.4300 Avicennia marina HOM05D000364 ORTHO05D000235 6.7e-11 71.6 56 66.1
Cpa.g.sc9.363 Carica papaya HOM05D000364 ORTHO05D000235 6.7e-11 71.6 56 64.3
Cfa015267 Carpinus fangiana HOM05D000364 ORTHO05D000235 6.7e-11 71.6 78 55.1
Medtr4g087300 Medicago truncatula HOM05D000364 ORTHO05D000235 6.7e-11 71.6 68 57.4
SalBow6G6716 Salvia bowleyana HOM05D000364 ORTHO05D000235 8.7e-11 71.2 56 64.3
Sed0023886 Sechium edule HOM05D000364 ORTHO05D000235 8.7e-11 71.2 61 62.3
Ca_18639_v3 Cicer arietinum L. HOM05D000364 ORTHO05D000235 1.1e-10 70.9 65 56.9
Haze_01364 Corylus avellana HOM05D000364 ORTHO05D000235 1.1e-10 70.9 67 59.7
Psat7g120280 Pisum sativum HOM05D000364 ORTHO05D000235 1.5e-10 70.5 66 56.1
Sabra19G0108000 Salix brachista HOM05D000364 ORTHO05D000235 1.5e-10 70.5 56 62.5
Lalb_Chr16g0384441 Lupinus albus HOM05D000364 ORTHO05D000235 1.9e-10 70.1 63 60.3
Thecc.04G165700 Theobroma cacao HOM05D000364 ORTHO05D000235 1.9e-10 70.1 55 67.3
Gohir.D10G123200 Gossypium hirsutum HOM05D000364 ORTHO05D000235 2.5e-10 69.7 64 57.8
Cfa011679 Carpinus fangiana HOM05D000364 ORTHO05D000235 3.3e-10 69.3 54 68.5
Peaxi162Scf00075g01418 Petunia axillaris HOM05D000364 ORTHO05D000235 3.3e-10 69.3 57 64.9
CAN.G653.9 Capsicum annuum HOM05D000364 ORTHO05D000235 5.6e-10 68.6 57 63.2
Eucgr.L00002 Eucalyptus grandis HOM05D000364 ORTHO05D000235 5.6e-10 68.6 56 62.5
Nitab4.5_0000122g0010 Nicotiana tabacum HOM05D000364 ORTHO05D000235 5.6e-10 68.6 57 63.2
Nitab4.5_0001433g0070 Nicotiana tabacum HOM05D000364 ORTHO05D000235 5.6e-10 68.6 57 63.2
Sopen08g005050 Solanum pennellii HOM05D000364 ORTHO05D000235 5.6e-10 68.6 57 63.2
Solyc08g014120.3 Solanum lycopersicum HOM05D000364 ORTHO05D000235 7.4e-10 68.2 57 63.2
THA.LOC104800924 Tarenaya hassleriana HOM05D000364 ORTHO05D000235 7.4e-10 68.2 64 54.7
TPR.G23515 Trifolium pratense HOM05D000364 ORTHO05D000235 7.4e-10 68.2 64 57.8
PGSC0003DMG400014621 Solanum tuberosum HOM05D000364 ORTHO05D000235 9.6e-10 67.8 57 63.2
CANSAT56G1018 Cannabis sativa HOM05D000364 ORTHO05D000235 1.3e-09 67.4 68 58.8
ClCG07G015210 Citrullus lanatus HOM05D000364 ORTHO05D000235 1.3e-09 67.4 61 59.0
Sed0020683 Sechium edule HOM05D000364 ORTHO05D000235 1.3e-09 67.4 56 62.5
Lalb_Chr09g0328111 Lupinus albus HOM05D000364 ORTHO05D000235 1.6e-09 67.0 56 64.3
THA.LOC104815873 Tarenaya hassleriana HOM05D000364 ORTHO05D000235 1.6e-09 67.0 64 53.1
TAR362G0990 Trochodendron aralioides HOM05D000364 ORTHO05D000235 2.1e-09 66.6 56 60.7
CiPaw.02G100500 Carya illinoinensis HOM05D000364 ORTHO05D000235 2.8e-09 66.2 64 60.9
SGA_v2.0_scaffold12G06185 Striga asiatica HOM05D000364 ORTHO05D000235 2.8e-09 66.2 84 47.6
SGA_v2.0_scaffold283G46964 Striga asiatica HOM05D000364 ORTHO05D000235 2.8e-09 66.2 84 47.6
Oeu015726.1 Olea europaea HOM05D000364 ORTHO05D000235 4.8e-09 65.5 56 58.9
Oeu050337.1 Olea europaea HOM05D000364 ORTHO05D000235 3.1e-08 62.8 56 58.9
Rhsim09G0010400 Rhododendron simsii HOM05D000364 ORTHO05D000235 3.1e-08 62.8 81 44.4
Aa31LG5G5260 Aethionema arabicum HOM05D000364 ORTHO05D000235 9.0e-08 61.2 102 42.2
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 9.0e-08 61.2 56 58.9
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 9.0e-08 61.2 56 58.9
BolC3t14472H Brassica oleracea HOM05D000364 ORTHO05D000235 9.0e-08 61.2 56 58.9
Sp4g14190 Schrenkiella parvula HOM05D000364 ORTHO05D000235 9.0e-08 61.2 56 60.7
CARHR005230 Cardamine hirsuta HOM05D000364 ORTHO05D000235 1.5e-07 60.5 56 58.9
SalBow3G3762 Salvia bowleyana HOM05D000364 ORTHO05D000235 1.5e-07 60.5 56 55.4
BcaB02g10414 Brassica carinata HOM05D000364 ORTHO05D000235 2.0e-07 60.1 56 58.9
BcaC02g11283 Brassica carinata HOM05D000364 ORTHO05D000235 2.0e-07 60.1 56 58.9
BolC4t23352H Brassica oleracea HOM05D000364 ORTHO05D000235 2.0e-07 60.1 56 58.9
AL1G15620 Arabidopsis lyrata HOM05D000364 ORTHO05D000235 2.6e-07 59.7 56 57.1
AT1G05710 Arabidopsis thaliana HOM05D000364 ORTHO05D000235 2.6e-07 59.7 56 58.9
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 2.6e-07 59.7 56 58.9
BraA05t20314Z Brassica rapa HOM05D000364 ORTHO05D000235 2.6e-07 59.7 56 58.9
Thhalv10009016m.g Eutrema salsugineum HOM05D000364 ORTHO05D000235 2.6e-07 59.7 56 57.1
Carub.0004s1304 Capsella rubella HOM05D000364 ORTHO05D000235 3.4e-07 59.3 56 58.9
CARHR125420 Cardamine hirsuta HOM05D000364 ORTHO05D000235 3.4e-07 59.3 56 57.1
AUR62023796 Chenopodium quinoa HOM05D000364 ORTHO05D000235 4.5e-07 58.9 56 58.9
BcaB03g13493 Brassica carinata HOM05D000364 ORTHO05D000235 5.8e-07 58.5 60 55.0
Carub.0001s0506 Capsella rubella HOM05D000364 ORTHO05D000235 5.8e-07 58.5 56 57.1
AUR62002393 Chenopodium quinoa HOM05D000364 ORTHO05D000235 5.8e-07 58.5 119 37.8
Gohir.D02G010100 Gossypium hirsutum HOM05D000364 ORTHO05D000235 5.8e-07 58.5 64 50.0
Gorai.005G012400 Gossypium raimondii HOM05D000364 ORTHO05D000235 5.8e-07 58.5 64 50.0
Ah.13g073560 Amaranthus hybridus HOM05D000364 ORTHO05D000235 7.6e-07 58.2 56 58.9
Sp1g04530 Schrenkiella parvula HOM05D000364 ORTHO05D000235 7.6e-07 58.2 56 55.4
EL10Ac3g06085 Beta vulgaris HOM05D000364 ORTHO05D000235 9.9e-07 57.8 56 57.1
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.3e-06 57.4 56 57.1
BcaC07g36845 Brassica carinata HOM05D000364 ORTHO05D000235 1.7e-06 57.0 64 50.0
C08p02200 Brassica napus HOM05D000364 ORTHO05D000235 1.7e-06 57.0 64 50.0
BolC8t47012H Brassica oleracea HOM05D000364 ORTHO05D000235 1.7e-06 57.0 64 50.0
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 2.9e-06 56.2 56 55.4
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 3.8e-06 55.8 56 57.1
MBI08_g33173_MAGBIO Magnolia biondii HOM05D000364 ORTHO05D000235 6.4e-06 55.1 65 44.6
BcaB02g06828 Brassica carinata HOM05D000364 ORTHO05D000235 8.4e-06 54.7 57 54.4
PSO732G0049 Papaver somniferum HOM05D000364 ORTHO05D000235 8.4e-06 54.7 58 55.2


User provided reference genes

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