Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.7e-69 265.8 123 100.0
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.5e-33 145.6 73 91.8
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 7.4e-25 117.5 75 77.3
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.7e-24 115.2 75 77.3
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 8.5e-21 104.0 72 66.7
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.1e-20 103.6 78 64.1
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 1.4e-20 103.2 73 65.8
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.9e-20 102.8 71 69.0
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 4.2e-20 101.7 73 67.1
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.6e-19 98.2 77 66.2
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 1.4e-18 96.7 78 64.1
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 3.9e-18 95.1 76 56.6
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 5.1e-18 94.7 71 64.8
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 8.8e-18 94.0 71 63.4
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 8.8e-18 94.0 71 63.4
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 1.5e-17 93.2 72 58.3
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 3.3e-17 92.0 71 63.4
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 4.3e-17 91.7 71 60.6
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 4.3e-17 91.7 71 57.7
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 4.3e-17 91.7 71 62.0
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 7.4e-17 90.9 71 62.0
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 7.4e-17 90.9 71 60.6
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 7.4e-17 90.9 72 59.7
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 9.7e-17 90.5 71 60.6
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 9.7e-17 90.5 46 84.8
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 9.7e-17 90.5 46 89.1
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 1.3e-16 90.1 71 62.0
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 1.7e-16 89.7 46 82.6
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.7e-16 89.7 72 59.7
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.7e-16 89.7 72 59.7
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 1.7e-16 89.7 72 59.7
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 1.7e-16 89.7 46 82.6
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 1.7e-16 89.7 46 76.1
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 1.7e-16 89.7 71 60.6
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 1.7e-16 89.7 46 82.6
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.7e-16 89.7 46 82.6
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 2.8e-16 89.0 72 59.7
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 2.8e-16 89.0 46 78.3
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 2.8e-16 89.0 71 57.7
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 3.7e-16 88.6 71 60.6
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 3.7e-16 88.6 46 87.0
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 3.7e-16 88.6 72 58.3
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 3.7e-16 88.6 46 73.9
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 3.7e-16 88.6 46 87.0
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 3.7e-16 88.6 46 87.0
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 3.7e-16 88.6 46 87.0
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 4.8e-16 88.2 46 80.4
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 6.3e-16 87.8 79 55.7
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 6.3e-16 87.8 72 59.7
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 6.3e-16 87.8 71 56.3
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 8.2e-16 87.4 46 82.6
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 8.2e-16 87.4 46 84.8
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 1.4e-15 86.7 71 60.6
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 1.8e-15 86.3 120 42.5
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 2.4e-15 85.9 47 78.7
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 3.1e-15 85.5 46 78.3
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 3.1e-15 85.5 46 78.3
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 3.1e-15 85.5 71 54.9
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 4.1e-15 85.1 71 59.2
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 4.1e-15 85.1 46 76.1
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 4.1e-15 85.1 46 76.1
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 4.1e-15 85.1 46 76.1
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 4.1e-15 85.1 46 76.1
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 4.1e-15 85.1 69 53.6
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 4.1e-15 85.1 46 78.3
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 5.3e-15 84.7 71 56.3
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 6.9e-15 84.3 46 80.4
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 6.9e-15 84.3 76 48.7
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 9.1e-15 84.0 46 78.3
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 9.1e-15 84.0 46 82.6
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 1.5e-14 83.2 71 56.3
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 2.0e-14 82.8 46 80.4
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 2.6e-14 82.4 71 54.9
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 2.6e-14 82.4 76 51.3
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 2.6e-14 82.4 46 80.4
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 3.4e-14 82.0 71 54.9
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 3.4e-14 82.0 71 50.7
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 3.4e-14 82.0 53 69.8
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 4.5e-14 81.6 46 73.9
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 4.5e-14 81.6 72 59.7
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 4.5e-14 81.6 71 54.9
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.5e-14 81.6 71 54.9
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.5e-14 81.6 71 54.9
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.5e-14 81.6 71 54.9
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.5e-14 81.6 71 54.9
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.5e-14 81.6 71 54.9
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.5e-14 81.6 71 54.9
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 4.5e-14 81.6 71 52.1
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 4.5e-14 81.6 69 55.1
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 5.9e-14 81.3 46 73.9
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 5.9e-14 81.3 46 71.7
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 5.9e-14 81.3 46 69.6
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 7.7e-14 80.9 72 55.6
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 7.7e-14 80.9 71 54.9
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 1.0e-13 80.5 46 73.9
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 1.0e-13 80.5 46 76.1
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 1.0e-13 80.5 71 53.5
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.3e-13 80.1 46 73.9
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 1.3e-13 80.1 71 54.9
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.3e-13 80.1 38 92.1
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 1.3e-13 80.1 46 76.1
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 1.3e-13 80.1 71 54.9
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 1.7e-13 79.7 71 54.9
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 1.7e-13 79.7 71 54.9
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 1.7e-13 79.7 46 76.1
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 2.2e-13 79.3 46 76.1
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 2.2e-13 79.3 46 76.1
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 2.2e-13 79.3 46 76.1
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 2.2e-13 79.3 46 76.1
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 2.2e-13 79.3 46 76.1
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 2.2e-13 79.3 46 76.1
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 2.2e-13 79.3 46 76.1
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 3.8e-13 78.6 71 53.5
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 3.8e-13 78.6 71 53.5
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 3.8e-13 78.6 46 67.4
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 3.8e-13 78.6 69 58.0
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 6.5e-13 77.8 71 53.5
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 6.5e-13 77.8 71 53.5
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 6.5e-13 77.8 46 73.9
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 6.5e-13 77.8 71 50.7
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 3.2e-12 75.5 66 57.6
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 3.2e-12 75.5 71 47.9
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 3.2e-12 75.5 71 47.9
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 4.2e-12 75.1 46 65.2
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 5.5e-12 74.7 71 50.7
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 7.2e-12 74.3 44 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 9.4e-12 73.9 71 47.9
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 9.4e-12 73.9 68 57.4
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 9.4e-12 73.9 46 63.0
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 2.1e-11 72.8 46 60.9
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.1e-11 72.8 66 56.1
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 2.1e-11 72.8 66 56.1
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 3.6e-11 72.0 68 51.5
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 7.9e-11 70.9 41 75.6
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 1.4e-10 70.1 71 46.5
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 1.4e-10 70.1 68 45.6
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.8e-10 69.7 74 44.6
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 3.9e-10 68.6 68 47.1
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.6e-09 65.9 75 41.3
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 5.7e-09 64.7 68 48.5
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 5.7e-09 64.7 76 40.8
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 7.4e-09 64.3 72 45.8
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 7.4e-09 64.3 81 38.3
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 1.3e-08 63.5 71 45.1
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 1.7e-08 63.2 74 37.8
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.7e-08 63.2 63 47.6
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 1.7e-08 63.2 76 39.5
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 2.8e-08 62.4 76 40.8
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 3.7e-08 62.0 72 43.1
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 3.7e-08 62.0 37 73.0
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 1.1e-07 60.5 69 46.4
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 1.4e-07 60.1 68 45.6
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.4e-07 60.1 68 45.6
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 1.8e-07 59.7 70 42.9
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.4e-07 59.3 69 44.9
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 3.1e-07 58.9 74 45.9
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 3.1e-07 58.9 63 50.8
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 4.1e-07 58.5 43 62.8
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 9.1e-07 57.4 71 42.3
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 9.1e-07 57.4 77 41.6
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 9.1e-07 57.4 76 36.8
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 2.0e-06 56.2 76 35.5
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 2.0e-06 56.2 51 51.0
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.4e-06 55.5 69 43.5
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 4.5e-06 55.1 59 44.1
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 4.5e-06 55.1 68 41.2
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 4.5e-06 55.1 76 35.5
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 5.9e-06 54.7 68 45.6
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 5.9e-06 54.7 68 45.6
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 5.9e-06 54.7 64 40.6
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 5.9e-06 54.7 40 52.5
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 5.9e-06 54.7 47 48.9
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 7.7e-06 54.3 35 65.7
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 7.7e-06 54.3 65 44.6
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.7e-06 54.3 75 41.3
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 7.7e-06 54.3 76 35.5


User provided reference genes

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