Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.1e-94 349.0 174 100.0
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.1e-94 349.0 174 100.0
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 9.9e-84 313.5 174 89.1
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 4.9e-83 311.2 174 88.5
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.4e-82 309.7 174 88.5
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 7.9e-81 303.9 172 86.0
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 4.0e-77 291.6 173 81.5
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 5.3e-77 291.2 173 80.3
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 9.0e-77 290.4 174 81.6
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.2e-76 290.0 169 85.8
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 4.5e-76 288.1 173 80.3
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 4.5e-76 288.1 173 79.8
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 4.5e-76 288.1 173 80.9
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.8e-76 287.7 170 84.7
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.0e-75 287.0 173 80.3
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.8e-75 285.0 173 78.0
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 3.8e-75 285.0 175 80.6
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 3.8e-75 285.0 171 80.1
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 4.9e-75 284.6 173 79.8
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 8.4e-75 283.9 173 80.3
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.4e-74 283.1 173 79.2
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.4e-74 283.1 173 78.0
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-74 283.1 173 78.0
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.9e-74 282.7 173 79.2
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.9e-74 282.7 174 78.2
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.5e-74 282.3 173 79.8
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.5e-74 282.3 173 79.2
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 3.2e-74 282.0 173 76.3
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.2e-74 281.6 173 76.9
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 4.2e-74 281.6 174 77.6
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 4.2e-74 281.6 174 79.3
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 5.5e-74 281.2 173 78.0
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.1e-73 279.3 173 77.5
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.1e-73 279.3 173 77.5
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.7e-73 278.9 173 76.3
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.5e-73 278.5 173 78.0
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 4.6e-73 278.1 173 77.5
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 6.0e-73 277.7 173 76.9
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 7.9e-73 277.3 173 77.5
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 7.9e-73 277.3 173 75.1
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.0e-72 276.9 175 78.3
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.3e-72 276.6 173 75.7
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.3e-72 275.8 164 79.9
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.0e-72 275.4 173 76.9
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 3.9e-72 275.0 158 85.4
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.9e-72 275.0 173 76.3
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 5.1e-72 274.6 175 77.7
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 5.1e-72 274.6 173 77.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.7e-72 274.2 173 76.9
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 8.7e-72 273.9 172 77.3
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 8.7e-72 273.9 171 77.2
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 8.7e-72 273.9 173 76.3
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.1e-71 273.5 173 76.3
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.1e-71 273.5 173 76.9
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.1e-71 273.5 173 76.9
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.9e-71 272.7 172 75.6
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 2.5e-71 272.3 173 75.7
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.5e-71 272.3 172 75.6
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 3.3e-71 271.9 173 75.7
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.3e-71 271.9 173 75.1
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 4.3e-71 271.6 172 75.0
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 5.7e-71 271.2 172 75.6
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 5.7e-71 271.2 172 74.4
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 9.7e-71 270.4 173 75.7
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 9.7e-71 270.4 172 74.4
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 9.7e-71 270.4 172 74.4
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 9.7e-71 270.4 173 74.0
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.3e-70 270.0 172 74.4
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.3e-70 270.0 172 74.4
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.6e-70 269.6 172 73.8
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.2e-70 269.2 173 75.1
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 2.8e-70 268.9 172 74.4
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 3.7e-70 268.5 171 79.5
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 6.3e-70 267.7 170 75.9
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.2e-70 267.3 173 75.7
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.1e-69 266.9 172 74.4
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.4e-69 266.5 173 77.5
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 6.9e-69 264.2 180 71.7
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 9.0e-69 263.8 173 75.1
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.0e-68 262.7 172 77.3
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.0e-68 262.7 170 74.1
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 4.5e-68 261.5 174 74.1
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 5.9e-68 261.2 171 73.7
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.3e-67 260.0 174 70.7
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.7e-67 259.6 174 73.0
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 8.5e-67 257.3 171 75.4
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.1e-66 256.9 170 73.5
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.4e-66 256.5 171 71.3
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.5e-66 255.8 173 71.7
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 3.2e-66 255.4 176 71.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 3.2e-66 255.4 169 71.0
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.2e-65 253.4 168 73.8
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.2e-65 253.4 168 73.8
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.6e-65 253.1 168 74.4
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.1e-65 252.7 170 72.4
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 4.6e-65 251.5 170 71.8
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.3e-64 250.0 164 75.6
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.3e-64 250.0 173 69.4
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.3e-64 249.2 168 72.6
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.3e-64 249.2 173 65.9
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 5.1e-64 248.1 170 71.2
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 5.1e-64 248.1 171 70.2
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 6.7e-64 247.7 172 70.9
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 6.7e-64 247.7 164 73.8
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 8.7e-64 247.3 170 72.9
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.9e-63 246.1 173 69.4
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.9e-63 246.1 174 69.5
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.9e-63 246.1 170 72.9
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 9.7e-63 243.8 170 68.2
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 9.7e-63 243.8 167 71.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.2e-62 242.7 168 69.0
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 2.2e-62 242.7 158 72.8
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 3.7e-62 241.9 172 69.2
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.2e-62 240.7 177 67.8
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.1e-61 240.4 164 71.3
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.4e-61 240.0 162 72.2
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.8e-61 239.6 170 69.4
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.8e-61 239.6 170 67.6
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 6.9e-61 237.7 170 67.1
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.2e-60 236.9 170 68.2
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.5e-60 236.5 168 67.3
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.3e-59 233.4 164 68.9
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.3e-59 233.4 176 68.8
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 5.0e-59 231.5 169 63.9
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 6.5e-59 231.1 170 64.7
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.2e-57 226.9 170 64.1
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.6e-57 226.5 134 78.4
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 3.6e-57 225.3 134 76.9
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 6.1e-57 224.6 168 68.5
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.1e-57 224.6 168 68.5
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 7.9e-57 224.2 170 61.8
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 2.3e-56 222.6 164 66.5
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.1e-56 221.5 168 67.3
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 3.3e-55 218.8 170 61.2
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.3e-55 218.8 168 66.7
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 3.3e-55 218.8 173 64.7
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-53 213.4 182 62.6
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 2.4e-53 212.6 160 63.1
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.2e-52 210.3 166 63.9
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.5e-52 209.9 173 60.7
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.0e-52 209.5 140 76.4
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.2e-51 206.1 156 62.8
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.9e-51 205.7 161 63.4
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.8e-51 205.3 139 71.2
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.8e-51 205.3 162 69.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.0e-51 204.9 136 76.5
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.1e-50 203.8 165 59.4
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 3.2e-50 202.2 159 59.1
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 3.6e-49 198.7 160 63.1
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.4e-48 196.8 170 54.7
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.0e-48 195.7 129 76.7
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 5.2e-48 194.9 166 62.7
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.1e-47 193.7 171 60.2
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 7.4e-47 191.0 129 72.9
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.1e-45 187.2 164 59.8
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.8e-45 186.4 180 57.8
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.1e-45 185.7 143 65.7
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.0e-44 183.0 180 57.2
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.0e-43 180.6 180 56.7
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.0e-43 180.6 164 57.3
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.2e-43 179.5 129 69.0
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 6.5e-43 177.9 157 52.2
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.7e-38 163.3 116 71.6
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.9e-35 152.5 90 80.0
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.0e-32 144.1 99 71.7
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 4.0e-32 142.1 93 71.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.7e-30 136.7 95 72.6
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.8e-30 136.0 149 43.6
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 8.3e-30 134.4 90 67.8
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.1e-25 119.8 174 43.7
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 2.6e-23 112.8 73 69.9
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.1e-18 97.4 79 58.2
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 4.9e-14 82.0 121 42.1
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-12 76.3 48 72.9
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.8e-12 74.7 53 67.9
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 8.6e-11 71.2 186 31.7
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.6e-09 67.0 36 80.6
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.6e-09 67.0 36 80.6
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 1.1e-08 64.3 77 46.8
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 3.4e-07 59.3 39 69.2
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 7.5e-07 58.2 64 39.1
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 3.7e-06 55.8 32 71.9
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 6.4e-06 55.1 32 71.9


User provided reference genes

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