Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.9e-56 222.2 111 100.0
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 8.7e-25 117.1 81 76.5
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 6.2e-23 110.9 81 77.8
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.8e-22 109.4 81 75.3
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 2.4e-22 109.0 80 73.8
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 5.8e-21 104.4 82 72.0
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 7.6e-21 104.0 82 70.7
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 1.0e-20 103.6 81 71.6
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 1.0e-20 103.6 81 71.6
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 2.2e-20 102.4 83 73.5
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 6.5e-20 100.9 81 69.1
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 1.1e-19 100.1 82 70.7
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 1.4e-19 99.8 81 67.9
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 1.9e-19 99.4 81 69.1
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 1.6e-18 96.3 81 69.1
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 7.9e-18 94.0 79 64.6
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 1.3e-17 93.2 80 62.5
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 2.3e-17 92.4 82 64.6
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 2.3e-17 92.4 80 68.8
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 8.7e-17 90.5 81 61.7
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 1.1e-16 90.1 81 66.7
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.9e-16 89.4 80 62.5
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.9e-16 89.4 80 62.5
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 2.5e-16 89.0 80 65.0
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 3.3e-16 88.6 85 58.8
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 5.7e-16 87.8 81 60.5
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 5.7e-16 87.8 80 60.0
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 5.7e-16 87.8 80 63.8
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 5.7e-16 87.8 80 61.2
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 7.4e-16 87.4 81 63.0
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 7.4e-16 87.4 84 58.3
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 7.4e-16 87.4 80 62.5
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 7.4e-16 87.4 80 62.5
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 7.4e-16 87.4 80 62.5
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 7.4e-16 87.4 80 63.8
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 7.4e-16 87.4 80 62.5
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 7.4e-16 87.4 81 60.5
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 9.7e-16 87.0 80 61.2
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 1.3e-15 86.7 80 58.8
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 1.3e-15 86.7 99 58.6
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 1.6e-15 86.3 74 66.2
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 2.2e-15 85.9 80 65.0
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 2.8e-15 85.5 81 64.2
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 3.7e-15 85.1 81 61.7
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 4.8e-15 84.7 80 60.0
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 6.3e-15 84.3 80 61.2
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 8.2e-15 84.0 76 67.1
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.1e-14 83.6 80 61.2
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 1.4e-14 83.2 79 64.6
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 1.4e-14 83.2 70 70.0
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 1.4e-14 83.2 80 60.0
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 1.8e-14 82.8 80 61.2
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 2.4e-14 82.4 83 57.8
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 4.1e-14 81.6 81 63.0
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 5.3e-14 81.3 80 57.5
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 5.3e-14 81.3 83 60.2
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 5.3e-14 81.3 65 73.8
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 5.3e-14 81.3 80 58.8
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 6.9e-14 80.9 80 58.8
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 9.0e-14 80.5 80 57.5
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 9.0e-14 80.5 80 62.5
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 1.2e-13 80.1 80 56.2
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 1.2e-13 80.1 80 60.0
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.5e-13 79.7 78 60.3
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 1.5e-13 79.7 87 56.3
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 2.0e-13 79.3 87 56.3
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 2.0e-13 79.3 87 56.3
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 2.0e-13 79.3 79 55.7
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 2.0e-13 79.3 81 59.3
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 2.0e-13 79.3 81 56.8
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 2.0e-13 79.3 86 54.7
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 2.6e-13 79.0 80 60.0
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 2.6e-13 79.0 87 56.3
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 3.4e-13 78.6 78 60.3
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 3.4e-13 78.6 80 58.8
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 3.4e-13 78.6 81 58.0
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 3.4e-13 78.6 78 59.0
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 4.5e-13 78.2 80 57.5
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 4.5e-13 78.2 82 58.5
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 5.9e-13 77.8 79 54.4
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 5.9e-13 77.8 77 58.4
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 7.6e-13 77.4 87 55.2
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 7.6e-13 77.4 87 55.2
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 7.6e-13 77.4 80 58.8
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 7.6e-13 77.4 79 54.4
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 7.6e-13 77.4 80 55.0
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 7.6e-13 77.4 81 58.0
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 7.6e-13 77.4 80 55.0
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.0e-12 77.0 87 55.2
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 1.0e-12 77.0 78 61.5
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 1.0e-12 77.0 81 59.3
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.0e-12 77.0 81 59.3
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.0e-12 77.0 83 61.4
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 1.3e-12 76.6 80 57.5
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 1.3e-12 76.6 80 57.5
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.3e-12 76.6 80 57.5
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 1.3e-12 76.6 78 59.0
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 1.3e-12 76.6 80 56.2
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 1.7e-12 76.3 78 59.0
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 1.7e-12 76.3 87 56.3
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 1.7e-12 76.3 78 59.0
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 1.7e-12 76.3 78 59.0
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.7e-12 76.3 87 56.3
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 1.7e-12 76.3 81 59.3
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 2.2e-12 75.9 80 57.5
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 2.2e-12 75.9 78 57.7
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 2.9e-12 75.5 81 58.0
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 2.9e-12 75.5 82 58.5
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 2.9e-12 75.5 82 58.5
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 2.9e-12 75.5 82 58.5
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 2.9e-12 75.5 80 57.5
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 2.9e-12 75.5 80 58.8
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 3.8e-12 75.1 80 56.2
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 3.8e-12 75.1 80 58.8
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 3.8e-12 75.1 79 58.2
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 3.8e-12 75.1 79 58.2
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 3.8e-12 75.1 64 65.6
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 3.8e-12 75.1 80 55.0
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 5.0e-12 74.7 78 57.7
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 5.0e-12 74.7 87 54.0
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 5.0e-12 74.7 87 55.2
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 5.0e-12 74.7 78 57.7
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 5.0e-12 74.7 87 55.2
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 5.0e-12 74.7 75 57.3
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 6.5e-12 74.3 80 57.5
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 6.5e-12 74.3 80 57.5
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 8.5e-12 73.9 78 57.7
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 8.5e-12 73.9 78 57.7
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 8.5e-12 73.9 78 56.4
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 1.1e-11 73.6 75 58.7
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 1.1e-11 73.6 75 58.7
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 1.1e-11 73.6 80 56.2
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 1.1e-11 73.6 80 56.2
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 1.1e-11 73.6 80 53.8
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 1.1e-11 73.6 79 55.7
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.4e-11 73.2 80 53.8
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 1.4e-11 73.2 78 56.4
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 1.4e-11 73.2 80 52.5
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 1.9e-11 72.8 81 58.0
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 1.9e-11 72.8 78 56.4
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 2.5e-11 72.4 80 55.0
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 2.5e-11 72.4 80 55.0
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 3.2e-11 72.0 54 70.4
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 3.2e-11 72.0 80 52.5
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 3.2e-11 72.0 80 58.8
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 5.5e-11 71.2 66 62.1
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 5.5e-11 71.2 80 56.2
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 7.2e-11 70.9 60 63.3
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 9.4e-11 70.5 80 51.2
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 9.4e-11 70.5 80 51.2
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 1.2e-10 70.1 80 51.2
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 1.2e-10 70.1 80 51.2
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 2.1e-10 69.3 83 51.8
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 3.6e-10 68.6 78 57.7
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 4.6e-10 68.2 45 71.1
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 4.6e-10 68.2 80 51.2
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 6.1e-10 67.8 66 63.6
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 6.1e-10 67.8 79 51.9
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 7.9e-10 67.4 45 71.1
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.0e-09 67.0 80 51.2
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 1.0e-09 67.0 54 61.1
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 1.4e-09 66.6 80 48.8
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.3e-09 65.9 80 48.8
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 2.3e-09 65.9 80 50.0
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 3.9e-09 65.1 55 61.8
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 5.1e-09 64.7 59 61.0
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 5.1e-09 64.7 80 48.8
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 1.1e-08 63.5 80 50.0
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 1.1e-08 63.5 80 52.5
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 1.9e-08 62.8 70 47.1
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 1.9e-08 62.8 61 60.7
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 3.3e-08 62.0 80 47.5
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 2.2e-07 59.3 81 48.1
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 2.8e-07 58.9 62 54.8
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 3.7e-07 58.5 59 50.8
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 4.8e-07 58.2 80 47.5
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 6.3e-07 57.8 78 48.7
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 6.3e-07 57.8 53 52.8
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 8.2e-07 57.4 61 57.4
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 1.1e-06 57.0 82 47.6
Nitab4.5_0005937g0030 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.8e-06 56.2 59 62.7
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 6.9e-06 54.3 74 47.3
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 9.1e-06 53.9 80 41.2


User provided reference genes

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