Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.6e-169 599.4 299 100.0
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 4.2e-122 441.8 331 70.1
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.5e-121 438.7 331 70.7
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 7.8e-121 437.6 330 69.4
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.3e-110 403.7 331 65.3
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 6.2e-110 401.4 330 65.2
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 3.8e-107 392.1 327 65.7
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 6.4e-107 391.3 327 63.0
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 4.2e-106 388.7 325 63.4
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.2e-105 387.1 333 61.3
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.6e-105 386.7 328 63.7
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 1.8e-104 383.3 328 61.9
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 3.9e-104 382.1 324 63.6
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 8.7e-104 380.9 330 63.0
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 1.5e-103 380.2 330 61.8
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.9e-103 379.8 326 62.6
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 4.3e-103 378.6 329 63.8
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 3.7e-102 375.6 326 64.1
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 6.2e-102 374.8 330 62.1
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 8.2e-102 374.4 328 60.7
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 9.0e-101 370.9 330 61.8
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.5e-100 370.2 325 64.0
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.6e-100 369.4 331 61.6
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 2.9e-99 365.9 322 61.8
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 8.4e-99 364.4 324 58.6
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 1.4e-98 363.6 326 61.3
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 4.2e-98 362.1 330 59.7
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.5e-98 361.7 332 57.2
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-97 360.5 332 57.5
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 4.6e-97 358.6 327 60.9
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 1.0e-96 357.5 333 61.0
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.8e-96 356.7 257 72.8
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.1e-95 354.0 332 56.6
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.3e-94 350.5 306 61.4
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 2.8e-94 349.4 324 56.8
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.8e-94 349.4 322 59.9
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.8e-94 348.6 322 59.9
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 1.1e-93 347.4 324 58.6
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.4e-93 346.3 314 60.2
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 3.1e-93 345.9 317 59.6
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 3.4e-92 342.4 328 57.0
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.3e-91 340.5 316 59.2
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 1.3e-91 340.5 324 58.0
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.7e-91 340.1 321 60.7
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.2e-91 339.7 292 63.4
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.9e-91 339.3 321 60.7
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.8e-91 339.0 321 59.5
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.5e-91 338.2 326 60.7
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.5e-91 337.8 321 59.2
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 1.4e-90 337.0 316 58.5
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 2.5e-90 336.3 253 69.6
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 9.4e-90 334.3 328 58.2
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 1.2e-89 334.0 329 56.8
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 3.6e-89 332.4 329 57.8
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 4.6e-89 332.0 339 56.3
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 7.9e-89 331.3 328 54.6
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 7.9e-89 331.3 297 60.9
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 1.4e-88 330.5 329 55.0
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 3.9e-88 328.9 325 56.6
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 6.7e-88 328.2 301 59.1
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 1.5e-87 327.0 328 55.8
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 2.5e-87 326.2 328 54.3
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 2.5e-87 326.2 327 53.5
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 2.5e-87 326.2 328 54.3
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 3.3e-87 325.9 328 54.6
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 7.4e-87 324.7 325 56.0
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 1.7e-86 323.6 330 50.9
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 2.8e-86 322.8 325 56.6
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.8e-86 322.8 330 54.5
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 8.2e-86 321.2 315 56.2
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.1e-85 320.9 330 51.8
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.4e-85 320.5 324 54.3
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 3.1e-85 319.3 269 62.5
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 4.1e-85 318.9 302 59.6
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 5.3e-85 318.5 325 56.0
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 6.9e-85 318.2 328 54.0
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 6.9e-85 318.2 325 54.2
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 9.1e-85 317.8 324 55.6
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 1.2e-84 317.4 324 55.9
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 1.2e-84 317.4 324 55.9
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 3.4e-84 315.8 328 53.0
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 3.4e-84 315.8 310 57.4
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 4.5e-84 315.5 324 55.2
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.0e-83 314.3 320 53.4
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.0e-83 314.3 330 53.9
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.7e-83 313.5 332 51.8
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.9e-83 312.8 329 52.0
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 3.8e-83 312.4 326 52.5
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 3.8e-83 312.4 329 51.7
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 3.8e-83 312.4 308 56.5
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.5e-83 311.6 329 51.7
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-82 310.8 329 51.4
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 1.1e-82 310.8 324 49.1
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.9e-82 310.1 319 53.9
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 4.2e-82 308.9 295 58.3
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.5e-82 308.5 355 48.7
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.2e-81 307.4 328 51.5
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.1e-81 306.6 327 51.1
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.7e-81 306.2 327 51.7
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.6e-81 305.8 311 55.3
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 4.7e-81 305.4 275 61.5
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 1.0e-80 304.3 292 58.9
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.0e-80 302.8 329 50.2
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.8e-80 301.2 329 50.2
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-79 300.4 329 50.2
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 2.0e-79 300.1 314 53.2
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.8e-78 296.2 323 52.6
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 3.7e-78 295.8 294 58.2
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 8.2e-78 294.7 292 58.2
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 8.2e-78 294.7 292 58.2
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 1.1e-77 294.3 259 61.0
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.1e-77 294.3 318 50.3
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.1e-77 294.3 358 50.6
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.8e-77 293.5 262 61.1
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 7.7e-76 288.1 324 48.8
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 1.0e-75 287.7 320 47.5
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 8.5e-75 284.6 257 57.2
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 8.5e-75 284.6 310 50.6
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.1e-74 284.3 292 52.4
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 2.5e-74 283.1 327 51.1
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 3.2e-74 282.7 315 49.2
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.2e-74 282.7 317 49.5
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 4.2e-74 282.3 340 47.9
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 5.5e-74 282.0 336 48.8
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 5.5e-74 282.0 344 47.1
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 1.2e-73 280.8 315 49.2
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 1.2e-73 280.8 331 47.1
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.2e-73 280.8 323 46.4
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.1e-73 280.0 320 48.1
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 2.7e-73 279.6 253 59.7
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 2.7e-73 279.6 263 55.5
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 4.7e-73 278.9 326 46.3
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 4.7e-73 278.9 324 46.6
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 8.0e-73 278.1 314 49.7
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.4e-72 277.3 324 49.7
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 1.8e-72 276.9 319 48.0
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 5.2e-72 275.4 321 48.3
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 1.1e-71 274.2 319 48.6
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 2.0e-71 273.5 256 56.6
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 2.0e-71 273.5 315 47.9
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.7e-70 270.4 317 45.7
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 1.7e-70 270.4 264 55.7
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.8e-69 266.9 318 49.7
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 3.1e-69 266.2 254 55.5
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.3e-67 260.8 310 47.7
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 2.2e-67 260.0 320 47.5
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 7.2e-66 255.0 229 57.2
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 3.6e-65 252.7 255 52.9
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 3.7e-62 242.7 277 49.1
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 4.1e-61 239.2 232 56.5
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 9.1e-61 238.0 247 49.8
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.6e-60 237.3 283 49.8
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 7.7e-60 235.0 286 44.4
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 6.5e-59 231.9 254 50.8
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 1.5e-58 230.7 233 51.9
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 6.8e-56 221.9 212 55.2
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 8.3e-54 214.9 161 68.9
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 4.2e-50 202.6 177 55.9
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-49 201.1 230 47.0
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.4e-48 197.6 157 63.1
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 5.7e-47 192.2 204 54.9
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 5.4e-45 185.7 160 61.9
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.6e-44 184.1 153 67.3
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.9e-42 177.2 202 49.0
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 2.2e-38 163.7 226 41.6
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 2.1e-33 147.1 252 35.7
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 7.3e-26 122.1 128 60.2
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.2e-23 114.8 124 43.5
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.3e-22 111.3 81 72.8
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.9e-22 109.4 81 70.4
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 5.4e-21 105.9 82 65.9
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 2.5e-18 97.1 86 59.3
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 4.3e-18 96.3 80 60.0
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.3e-14 84.7 77 59.7
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 7.8e-12 75.5 54 68.5


User provided reference genes

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