Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016850 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 1.3e-76 289.7 144 100.0
CSS0012342 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 5.0e-73 277.7 143 96.5
CSS0042318 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 5.0e-73 277.7 143 96.5
CSS0012683 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 3.8e-65 251.5 144 91.0
CSS0044848 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 9.5e-64 246.9 144 88.9
CSS0004736 Camellia sinensis var. sinensis HOM05D003988 ORTHO05D004688 2.0e-21 106.3 63 90.5
Actinidia18930 Actinidia chinensis HOM05D003988 ORTHO05D004688 4.2e-11 72.0 63 60.3
Dinv15683 Davidia involucrata HOM05D003988 ORTHO05D004688 2.1e-10 69.7 61 60.7
Actinidia35091 Actinidia chinensis HOM05D003988 ORTHO05D004688 7.9e-10 67.8 63 57.1
Rhsim08G0133900 Rhododendron simsii HOM05D003988 ORTHO05D004688 1.0e-09 67.4 63 55.6
Lj5C149G16 Lonicera japonica HOM05D003988 ORTHO05D004688 1.8e-09 66.6 63 54.0
vmacro16441 Vaccinium macrocarpon HOM05D003988 ORTHO05D004688 3.0e-09 65.9 63 55.6
Hma1.2p1_0653F.1_g196250 Hydrangea macrophylla HOM05D003988 ORTHO05D004688 5.1e-09 65.1 63 52.4
Rhsim12G0143000 Rhododendron simsii HOM05D003988 ORTHO05D004688 2.5e-08 62.8 63 54.0
GSVIVG01008297001 Vitis vinifera HOM05D003988 ORTHO05D004688 2.5e-08 62.8 60 48.3
CSS0009918 Camellia sinensis var. sinensis HOM05D003988 ORTHO05D004688 5.6e-08 61.6 63 54.0
DCAR_023207 Daucus carota HOM05D003988 ORTHO05D004688 7.4e-08 61.2 61 45.9
Dinv28109 Davidia involucrata HOM05D003988 ORTHO05D004688 1.6e-07 60.1 63 54.0
Aa31LG8G5200 Aethionema arabicum HOM05D003988 ORTHO05D004688 2.8e-07 59.3 65 46.2
Cc04_g07060 Coffea canephora HOM05D003988 ORTHO05D004688 2.8e-07 59.3 63 49.2
CiPaw.16G086900 Carya illinoinensis HOM05D003988 ORTHO05D004688 3.7e-07 58.9 63 47.6
Potri.012G056000 Populus trichocarpa HOM05D003988 ORTHO05D004688 3.7e-07 58.9 47 66.0
Sabra15G0039000 Salix brachista HOM05D003988 ORTHO05D004688 8.1e-07 57.8 44 65.9
vmacro17712 Vaccinium macrocarpon HOM05D003988 ORTHO05D004688 8.1e-07 57.8 63 49.2
Cfa019762 Carpinus fangiana HOM05D003988 ORTHO05D004688 1.1e-06 57.4 63 46.0
Ciclev10018856m.g Citrus clementina HOM05D003988 ORTHO05D004688 1.1e-06 57.4 43 58.1
Lsat_1_v5_gn_8_146920 Lactuca sativa HOM05D003988 ORTHO05D004688 1.1e-06 57.4 61 49.2
Manes.05G113166 Manihot esculenta HOM05D003988 ORTHO05D004688 1.1e-06 57.4 40 67.5
MELO3C002088.2 Cucumis melo HOM05D003988 ORTHO05D004688 1.4e-06 57.0 45 55.6
Sed0017030 Sechium edule HOM05D003988 ORTHO05D004688 1.4e-06 57.0 43 58.1
AL3G31660 Arabidopsis lyrata HOM05D003988 ORTHO05D004688 1.8e-06 56.6 81 40.7
AT3G18370 Arabidopsis thaliana HOM05D003988 ORTHO05D004688 1.8e-06 56.6 43 55.8
BcaB06g25881 Brassica carinata HOM05D003988 ORTHO05D004688 1.8e-06 56.6 43 55.8
BcaC05g28634 Brassica carinata HOM05D003988 ORTHO05D004688 1.8e-06 56.6 43 55.8
A05p31310 Brassica napus HOM05D003988 ORTHO05D004688 1.8e-06 56.6 43 55.8
C05p47400 Brassica napus HOM05D003988 ORTHO05D004688 1.8e-06 56.6 43 55.8
BolC5t33466H Brassica oleracea HOM05D003988 ORTHO05D004688 1.8e-06 56.6 43 55.8
BraA05t21969Z Brassica rapa HOM05D003988 ORTHO05D004688 1.8e-06 56.6 43 55.8
CiPaw.15G131300 Carya illinoinensis HOM05D003988 ORTHO05D004688 1.8e-06 56.6 61 45.9
ClCG04G011120 Citrullus lanatus HOM05D003988 ORTHO05D004688 1.8e-06 56.6 43 60.5
Thhalv10020065m.g Eutrema salsugineum HOM05D003988 ORTHO05D004688 1.8e-06 56.6 43 55.8
Nitab4.5_0009306g0030 Nicotiana tabacum HOM05D003988 ORTHO05D004688 1.8e-06 56.6 64 45.3
Thecc.03G036400 Theobroma cacao HOM05D003988 ORTHO05D004688 1.8e-06 56.6 61 44.3
CANSAT80G2599 Cannabis sativa HOM05D003988 ORTHO05D004688 2.4e-06 56.2 63 44.4
CsaV3_1G006640 Cucumis sativus L. HOM05D003988 ORTHO05D004688 2.4e-06 56.2 43 58.1
HanXRQChr08g0226051 Helianthus annuus HOM05D003988 ORTHO05D004688 3.1e-06 55.8 59 49.2
Lalb_Chr14g0371121 Lupinus albus HOM05D003988 ORTHO05D004688 3.1e-06 55.8 66 45.5
Sed0007612 Sechium edule HOM05D003988 ORTHO05D004688 3.1e-06 55.8 60 45.0
Carub.0003s1815 Capsella rubella HOM05D003988 ORTHO05D004688 4.0e-06 55.5 65 41.5
COL.COLO4_32832 Corchorus olitorius HOM05D003988 ORTHO05D004688 4.0e-06 55.5 61 42.6
DCAR_011356 Daucus carota HOM05D003988 ORTHO05D004688 4.0e-06 55.5 53 49.1
Lj2g0015725 Lotus japonicus HOM05D003988 ORTHO05D004688 4.0e-06 55.5 67 40.3
MD14G1227200 Malus domestica HOM05D003988 ORTHO05D004688 4.0e-06 55.5 63 44.4
Sp3g16480 Schrenkiella parvula HOM05D003988 ORTHO05D004688 4.0e-06 55.5 43 53.5
CARHR093720 Cardamine hirsuta HOM05D003988 ORTHO05D004688 5.3e-06 55.1 65 41.5
Cpa.g.sc3.506 Carica papaya HOM05D003988 ORTHO05D004688 5.3e-06 55.1 63 46.0
Migut.A00873 Erythranthe guttata HOM05D003988 ORTHO05D004688 5.3e-06 55.1 63 44.4
Pp3c9_20840 Physcomitrium patens HOM05D003988 ORTHO05D004688 5.3e-06 55.1 63 39.7
PGR044G0911 Punica granatum HOM05D003988 ORTHO05D004688 5.3e-06 55.1 63 46.0
TWI81G0944 Tripterygium wilfordii HOM05D003988 ORTHO05D004688 5.3e-06 55.1 61 47.5
Eucgr.K02227 Eucalyptus grandis HOM05D003988 ORTHO05D004688 6.9e-06 54.7 63 47.6
Nitab4.5_0002906g0030 Nicotiana tabacum HOM05D003988 ORTHO05D004688 6.9e-06 54.7 64 45.3
Prupe.5G221900 Prunus persica HOM05D003988 ORTHO05D004688 6.9e-06 54.7 63 46.0
Atru.chr9.851 Acer truncatum HOM05D003988 ORTHO05D004688 9.0e-06 54.3 61 45.9
Duzib205G1863 Durio zibethinus HOM05D003988 ORTHO05D004688 9.0e-06 54.3 61 44.3
Lalb_Chr22g0353111 Lupinus albus HOM05D003988 ORTHO05D004688 9.0e-06 54.3 63 42.9
Lalb_Chr24g0397841 Lupinus albus HOM05D003988 ORTHO05D004688 9.0e-06 54.3 43 58.1


User provided reference genes

Program Settings