Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.7e-50 201.8 90 100.0
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.5e-45 184.9 89 92.1
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 3.2e-43 178.3 86 90.7
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 3.2e-43 178.3 86 90.7
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 3.2e-43 178.3 86 90.7
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 4.2e-43 177.9 85 90.6
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 7.2e-43 177.2 85 90.6
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 7.2e-43 177.2 86 89.5
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 1.6e-42 176.0 86 89.5
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 1.6e-42 176.0 86 89.5
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.6e-42 176.0 86 89.5
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 2.1e-42 175.6 86 89.5
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 2.7e-42 175.3 86 87.2
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 2.7e-42 175.3 85 90.6
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 2.7e-42 175.3 85 88.2
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 4.7e-42 174.5 85 89.4
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 1.0e-41 173.3 86 86.0
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 2.3e-41 172.2 85 87.1
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 2.3e-41 172.2 86 88.4
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 4.0e-41 171.4 86 84.9
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 4.0e-41 171.4 84 88.1
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 4.0e-41 171.4 84 88.1
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 4.0e-41 171.4 84 88.1
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 1.2e-40 169.9 85 85.9
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 1.2e-40 169.9 86 86.0
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 2.0e-40 169.1 86 86.0
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 2.6e-40 168.7 86 83.7
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 3.4e-40 168.3 86 86.0
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 5.7e-40 167.5 85 85.9
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 5.7e-40 167.5 86 86.0
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 5.7e-40 167.5 86 86.0
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 7.5e-40 167.2 85 84.7
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 9.8e-40 166.8 81 88.9
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 1.3e-39 166.4 82 87.8
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 2.2e-39 165.6 85 84.7
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 2.2e-39 165.6 82 86.6
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 3.7e-39 164.9 82 86.6
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 3.7e-39 164.9 86 82.6
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 4.8e-39 164.5 82 86.6
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 4.8e-39 164.5 85 84.7
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 4.8e-39 164.5 85 84.7
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 4.8e-39 164.5 82 85.4
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 6.3e-39 164.1 84 85.7
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 8.3e-39 163.7 86 83.7
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 8.3e-39 163.7 85 83.5
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 8.3e-39 163.7 85 82.4
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 1.1e-38 163.3 86 84.9
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 1.1e-38 163.3 85 84.7
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 1.4e-38 162.9 87 83.9
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 1.4e-38 162.9 87 83.9
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 2.4e-38 162.2 86 83.7
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 2.4e-38 162.2 81 85.2
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 4.1e-38 161.4 85 83.5
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 5.4e-38 161.0 81 86.4
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 7.0e-38 160.6 86 82.6
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 7.0e-38 160.6 81 84.0
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 2.0e-37 159.1 82 85.4
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 3.5e-37 158.3 86 80.2
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 4.5e-37 157.9 86 81.4
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 5.9e-37 157.5 85 83.5
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 7.7e-37 157.1 82 81.7
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 2.2e-36 155.6 86 82.6
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 2.2e-36 155.6 84 82.1
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 2.2e-36 155.6 84 82.1
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 2.9e-36 155.2 86 81.4
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 5.0e-36 154.5 86 80.2
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 5.0e-36 154.5 86 80.2
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 5.0e-36 154.5 86 80.2
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 5.0e-36 154.5 86 80.2
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 5.0e-36 154.5 86 80.2
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 6.5e-36 154.1 84 79.8
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 1.1e-35 153.3 86 79.1
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 1.1e-35 153.3 86 79.1
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 1.1e-35 153.3 86 79.1
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 1.1e-35 153.3 104 68.3
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 1.5e-35 152.9 86 79.1
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 1.5e-35 152.9 86 79.1
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 1.5e-35 152.9 86 79.1
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 1.5e-35 152.9 86 79.1
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 1.5e-35 152.9 82 81.7
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 3.2e-35 151.8 88 78.4
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 5.5e-35 151.0 86 79.1
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 7.2e-35 150.6 84 77.4
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 7.2e-35 150.6 84 77.4
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 7.2e-35 150.6 84 77.4
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 7.2e-35 150.6 84 77.4
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 9.5e-35 150.2 86 77.9
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.6e-34 149.4 86 77.9
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 2.8e-34 148.7 86 77.9
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 1.0e-33 146.7 85 75.3
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 1.4e-33 146.4 84 76.2
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 1.8e-33 146.0 76 80.3
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 6.8e-33 144.1 78 79.5
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.5e-32 142.9 71 88.7
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 1.5e-32 142.9 82 74.4
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 5.7e-32 141.0 86 74.4
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 5.4e-30 134.4 78 71.8
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 3.5e-29 131.7 83 73.5
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 4.5e-29 131.3 63 88.9
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 1.3e-28 129.8 63 88.9
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 6.6e-28 127.5 63 85.7
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 6.1e-26 120.9 61 82.0
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 1.8e-25 119.4 63 81.0
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 3.0e-20 102.1 51 80.4
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 8.6e-20 100.5 49 85.7
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 1.4e-17 93.2 64 62.5
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.9e-15 85.5 43 88.4
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 6.4e-15 84.3 56 62.5
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 7.0e-14 80.9 43 81.4
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 7.0e-14 80.9 37 94.6
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 5.0e-12 74.7 58 55.2
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 3.6e-10 68.6 41 75.6
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 1.2e-08 63.5 40 70.0


User provided reference genes

Program Settings