Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 5.5e-168 594.3 328 100.0
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 2.4e-147 525.8 330 91.5
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 8.0e-127 457.6 317 81.4
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 2.8e-119 432.6 319 76.5
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 3.0e-113 412.5 323 72.1
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 2.4e-107 392.9 323 64.1
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 2.4e-107 392.9 320 70.0
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 9.2e-107 391.0 324 71.3
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 2.7e-106 389.4 321 69.2
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 1.1e-104 384.0 403 58.3
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 1.9e-104 383.3 317 69.1
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 4.3e-104 382.1 323 69.0
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 4.3e-104 382.1 335 66.6
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 1.6e-103 380.2 331 68.6
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 3.6e-103 379.0 312 71.5
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 1.1e-102 377.5 317 70.7
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 1.4e-102 377.1 317 70.7
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 1.8e-102 376.7 311 69.1
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 3.1e-102 375.9 316 70.3
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 4.0e-102 375.6 325 67.1
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 1.5e-101 373.6 335 65.4
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 2.6e-101 372.9 316 66.8
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 7.6e-101 371.3 312 65.4
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 1.3e-100 370.5 318 66.7
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 1.3e-100 370.5 314 67.8
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 1.7e-100 370.2 324 66.4
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 2.2e-100 369.8 317 69.7
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 1.4e-99 367.1 316 68.0
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 1.9e-99 366.7 313 66.5
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 2.4e-99 366.3 326 66.9
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 2.4e-99 366.3 324 65.1
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 3.2e-99 365.9 312 64.7
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 4.2e-99 365.5 312 67.9
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 4.2e-99 365.5 329 65.3
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 2.7e-98 362.8 325 64.9
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 6.0e-98 361.7 324 65.7
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 1.0e-97 360.9 315 66.0
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 1.3e-97 360.5 327 63.9
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 6.6e-97 358.2 324 67.3
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 8.7e-97 357.8 315 68.9
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 8.7e-97 357.8 265 77.0
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 1.9e-96 356.7 320 65.9
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 5.6e-96 355.1 340 62.9
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 2.1e-95 353.2 326 57.7
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 2.1e-95 353.2 334 62.6
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 2.1e-95 353.2 325 65.5
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 3.6e-95 352.4 335 60.3
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 4.8e-95 352.1 315 66.7
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 6.2e-95 351.7 313 66.5
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 6.2e-95 351.7 334 64.4
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 6.2e-95 351.7 326 66.0
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 1.1e-94 350.9 335 63.0
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 5.3e-94 348.6 321 65.1
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 5.3e-94 348.6 318 66.7
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 6.9e-94 348.2 322 64.9
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 9.9e-93 344.4 347 62.2
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 9.9e-93 344.4 326 62.9
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 2.9e-92 342.8 320 62.8
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 3.8e-92 342.4 313 64.5
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 4.9e-92 342.0 332 61.7
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 1.4e-91 340.5 318 62.9
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 1.9e-91 340.1 316 64.2
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 4.2e-91 339.0 311 63.7
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 7.1e-91 338.2 311 63.3
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 2.7e-90 336.3 324 64.2
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 3.5e-90 335.9 328 60.4
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 3.5e-90 335.9 328 60.4
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 1.0e-89 334.3 315 61.6
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 2.3e-89 333.2 329 60.5
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.9e-88 330.1 295 59.0
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 3.3e-88 329.3 313 61.3
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 3.3e-88 329.3 319 54.9
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 4.3e-88 328.9 324 56.2
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 4.3e-88 328.9 341 61.0
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 2.8e-87 326.2 315 56.2
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 2.8e-87 326.2 321 60.1
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 6.2e-87 325.1 323 53.9
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 6.2e-87 325.1 323 53.9
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 6.9e-86 321.6 326 54.0
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 9.0e-86 321.2 319 59.9
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 9.0e-86 321.2 319 59.9
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 1.5e-85 320.5 311 54.7
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 4.5e-85 318.9 199 79.9
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 3.5e-82 309.3 269 66.2
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 1.0e-81 307.8 333 57.7
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 9.0e-78 294.7 312 54.8
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 1.2e-77 294.3 361 52.4
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 8.4e-76 288.1 271 65.3
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 7.1e-75 285.0 264 58.3
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 1.6e-74 283.9 197 73.6
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 1.6e-74 283.9 187 73.3
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 1.6e-74 283.9 329 51.7
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 7.9e-74 281.6 318 55.7
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 5.1e-73 278.9 322 50.0
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 6.7e-73 278.5 184 73.4
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 6.7e-73 278.5 184 73.4
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 5.7e-72 275.4 313 54.6
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 2.1e-71 273.5 311 55.9
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 3.7e-71 272.7 223 71.3
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 6.9e-70 268.5 340 55.3
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 2.2e-68 263.5 321 52.0
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 6.1e-66 255.4 240 67.1
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 1.8e-57 227.3 326 46.6
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 3.9e-57 226.1 186 58.1
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 2.1e-50 203.8 150 65.3
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 2.1e-50 203.8 208 52.9
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 3.6e-50 203.0 321 40.2
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 5.2e-49 199.1 144 68.8
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 7.7e-45 185.3 136 65.4
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 2.5e-43 180.3 315 38.7
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 1.4e-38 164.5 411 35.3
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 1.8e-33 147.5 166 65.7
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 2.3e-25 120.6 84 69.0
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 1.2e-24 118.2 122 50.0
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 2.0e-24 117.5 77 77.9
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 9.8e-24 115.2 138 49.3
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 1.1e-22 111.7 349 27.8
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 1.8e-22 110.9 88 68.2
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 7.8e-21 105.5 191 37.7
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 4.3e-19 99.8 154 38.3
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 3.6e-18 96.7 57 77.2
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 1.5e-16 91.3 87 60.9
Rhsim04G0176300 Rhododendron simsii HOM05D006103 ORTHO05D007468 2.4e-14 84.0 66 68.2
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 3.2e-14 83.6 50 80.0
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 9.2e-14 82.0 150 38.7
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 1.2e-13 81.6 48 83.3
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 4.6e-13 79.7 51 78.4
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 7.3e-11 72.4 45 82.2
Ah.07g199910 Amaranthus hybridus HOM05D006103 ORTHO05D007468 2.8e-10 70.5 62 56.5


User provided reference genes

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