Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016818 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D004715 4.7e-54 214.2 100 100.0
C09p39330 Brassica napus HOM05D000963 ORTHO05D004715 2.3e-45 185.3 116 80.2
Atru.chr1.3576 Acer truncatum HOM05D000963 ORTHO05D004715 2.0e-44 182.2 132 71.2
COL.COLO4_02154 Corchorus olitorius HOM05D000963 ORTHO05D004715 2.0e-44 182.2 132 71.2
Sed0014585 Sechium edule HOM05D000963 ORTHO05D004715 2.0e-44 182.2 132 71.2
QL10p017079 Quercus lobata HOM05D000963 ORTHO05D004715 5.8e-44 180.6 131 70.2
QL93p0141_0026 Quercus lobata HOM05D000963 ORTHO05D004715 5.8e-44 180.6 131 70.2
Sed0012027 Sechium edule HOM05D000963 ORTHO05D004715 5.8e-44 180.6 131 71.0
Lsat_1_v5_gn_1_88180 Lactuca sativa HOM05D000963 ORTHO05D004715 1.3e-43 179.5 132 70.5
Lsat_1_v5_gn_2_97121 Lactuca sativa HOM05D000963 ORTHO05D004715 1.3e-43 179.5 132 70.5
Lsat_1_v5_gn_8_139840 Lactuca sativa HOM05D000963 ORTHO05D004715 1.3e-43 179.5 132 70.5
Lsat_1_v5_gn_9_121741 Lactuca sativa HOM05D000963 ORTHO05D004715 1.3e-43 179.5 132 70.5
AL9U11970 Arabidopsis lyrata HOM05D000963 ORTHO05D004715 1.7e-43 179.1 132 70.5
C09p40280 Brassica napus HOM05D000963 ORTHO05D004715 1.7e-43 179.1 132 70.5
BolC9t56918H Brassica oleracea HOM05D000963 ORTHO05D004715 1.7e-43 179.1 132 70.5
BolSC29t60541H Brassica oleracea HOM05D000963 ORTHO05D004715 1.7e-43 179.1 132 70.5
BolSC44t60816H Brassica oleracea HOM05D000963 ORTHO05D004715 1.7e-43 179.1 132 70.5
BolSC44t60829H Brassica oleracea HOM05D000963 ORTHO05D004715 1.7e-43 179.1 132 70.5
BolSC49t61135H Brassica oleracea HOM05D000963 ORTHO05D004715 1.7e-43 179.1 132 70.5
BraSC103t45422Z Brassica rapa HOM05D000963 ORTHO05D004715 1.7e-43 179.1 132 70.5
BraSC103t45433Z Brassica rapa HOM05D000963 ORTHO05D004715 1.7e-43 179.1 132 70.5
BraSC25t45904Z Brassica rapa HOM05D000963 ORTHO05D004715 1.7e-43 179.1 132 70.5
BraSC25t45917Z Brassica rapa HOM05D000963 ORTHO05D004715 1.7e-43 179.1 132 70.5
BolSC37t60787H Brassica oleracea HOM05D000963 ORTHO05D004715 2.2e-43 178.7 133 69.9
BraSC143t45652Z Brassica rapa HOM05D000963 ORTHO05D004715 2.2e-43 178.7 133 69.9
BraSC59t46533Z Brassica rapa HOM05D000963 ORTHO05D004715 2.2e-43 178.7 132 69.7
Sopen06g015060 Solanum pennellii HOM05D000963 ORTHO05D004715 2.2e-43 178.7 133 69.9
PGSC0003DMG400034831 Solanum tuberosum HOM05D000963 ORTHO05D004715 2.2e-43 178.7 133 69.9
Gohir.1Z049781 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.9e-43 178.3 132 70.5
Migut.D01391 Erythranthe guttata HOM05D000963 ORTHO05D004715 4.9e-43 177.6 132 69.7
BraSC138t45541Z Brassica rapa HOM05D000963 ORTHO05D004715 8.3e-43 176.8 131 69.5
QL93p0141_0000 Quercus lobata HOM05D000963 ORTHO05D004715 1.1e-42 176.4 131 68.7
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.4e-42 176.0 128 70.3
CAN.G929.1 Capsicum annuum HOM05D000963 ORTHO05D004715 3.2e-42 174.9 133 68.4
CAN.G1298.20 Capsicum annuum HOM05D000963 ORTHO05D004715 9.2e-42 173.3 133 67.7
BolSC45t60916H Brassica oleracea HOM05D000963 ORTHO05D004715 1.2e-41 172.9 128 69.5
Gohir.A01G139826 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.3e-40 169.5 116 75.0
Lsat_1_v5_gn_2_50801 Lactuca sativa HOM05D000963 ORTHO05D004715 1.1e-39 166.4 131 66.4
Lsat_1_v5_gn_5_181901 Lactuca sativa HOM05D000963 ORTHO05D004715 1.1e-39 166.4 129 66.7
Lsat_1_v5_gn_5_4701 Lactuca sativa HOM05D000963 ORTHO05D004715 1.1e-39 166.4 129 66.7
HPP92_028430 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.5e-39 166.0 132 66.7
FvH4_c3g00050 Fragaria vesca HOM05D000963 ORTHO05D004715 1.9e-39 165.6 123 69.1
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.6e-39 164.1 123 66.7
CAN.G965.10 Capsicum annuum HOM05D000963 ORTHO05D004715 1.6e-38 162.5 133 65.4
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 1.4e-37 159.5 130 61.5
Sed0006422 Sechium edule HOM05D000963 ORTHO05D004715 1.3e-35 152.9 126 64.3
Medtr5g080940 Medicago truncatula HOM05D000963 ORTHO05D004715 3.8e-35 151.4 125 63.2
Nitab4.5_0008665g0030 Nicotiana tabacum HOM05D000963 ORTHO05D004715 8.4e-35 150.2 123 64.2
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 4.2e-34 147.9 118 66.1
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 4.2e-34 147.9 118 66.1
Sed0011513 Sechium edule HOM05D000963 ORTHO05D004715 1.2e-33 146.4 125 63.2
Gorai.012G060700 Gossypium raimondii HOM05D000963 ORTHO05D004715 1.0e-32 143.3 118 63.6
arahy.Tifrunner.gnm1.ann1.D5AR02 Arachis hypogaea HOM05D000963 ORTHO05D004715 2.3e-32 142.1 110 67.3
Gohir.D01G169154 Gossypium hirsutum HOM05D000963 ORTHO05D004715 8.7e-32 140.2 115 65.2
CAN.G67.2 Capsicum annuum HOM05D000963 ORTHO05D004715 6.2e-30 134.0 145 55.2
Aqoxy38s008 Aquilegia oxysepala HOM05D000963 ORTHO05D004715 1.1e-29 133.3 106 65.1
Gohir.D04G096676 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.8e-29 132.5 106 65.1
Potri.011G074033 Populus trichocarpa HOM05D000963 ORTHO05D004715 4.0e-29 131.3 106 64.2
Gohir.A07G151200 Gossypium hirsutum HOM05D000963 ORTHO05D004715 9.0e-29 130.2 106 64.2
Gohir.A04G057626 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.2e-28 129.8 106 63.2
Oeu012821.1 Olea europaea HOM05D000963 ORTHO05D004715 2.0e-28 129.0 132 57.6
Sc01g0005720 Simmondsia chinensis HOM05D000963 ORTHO05D004715 2.0e-28 129.0 106 64.2
Nitab4.5_0012234g0080 Nicotiana tabacum HOM05D000963 ORTHO05D004715 4.4e-28 127.9 91 73.6
Gohir.D04G054150 Gossypium hirsutum HOM05D000963 ORTHO05D004715 9.9e-28 126.7 106 62.3
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 2.9e-27 125.2 110 60.9
FAN13G1706 Fragaria x ananassa HOM05D000963 ORTHO05D004715 3.8e-27 124.8 109 61.5
Gohir.A05G286366 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.4e-26 122.9 99 64.6
Sabra11G0069300 Salix brachista HOM05D000963 ORTHO05D004715 9.3e-26 120.2 110 59.1
SalBow1G2814 Salvia bowleyana HOM05D000963 ORTHO05D004715 2.1e-25 119.0 108 61.1
SalBow1G5969 Salvia bowleyana HOM05D000963 ORTHO05D004715 2.1e-25 119.0 108 61.1
Mapoly0147s0015 Marchantia polymorpha HOM05D000963 ORTHO05D004715 6.0e-25 117.5 103 60.2
BraSC59t46506Z Brassica rapa HOM05D000963 ORTHO05D004715 1.7e-24 115.9 102 62.7
unitig_91.g26522 Utricularia gibba HOM05D000963 ORTHO05D004715 1.9e-23 112.5 53 94.3
unitig_91.g26525 Utricularia gibba HOM05D000963 ORTHO05D004715 1.9e-23 112.5 53 94.3
DCAR_014935 Daucus carota HOM05D000963 ORTHO05D004715 4.3e-23 111.3 53 92.5
arahy.Tifrunner.gnm1.ann1.0S9V2W Arachis hypogaea HOM05D000963 ORTHO05D004715 7.3e-23 110.5 53 92.5
arahy.Tifrunner.gnm1.ann1.56M0GV Arachis hypogaea HOM05D000963 ORTHO05D004715 7.3e-23 110.5 53 92.5
arahy.Tifrunner.gnm1.ann1.E29LBX Arachis hypogaea HOM05D000963 ORTHO05D004715 7.3e-23 110.5 53 92.5
arahy.Tifrunner.gnm1.ann1.NRNC1F Arachis hypogaea HOM05D000963 ORTHO05D004715 7.3e-23 110.5 53 92.5
arahy.Tifrunner.gnm1.ann1.PH4GL6 Arachis hypogaea HOM05D000963 ORTHO05D004715 7.3e-23 110.5 53 92.5
arahy.Tifrunner.gnm1.ann1.RS9AFF Arachis hypogaea HOM05D000963 ORTHO05D004715 7.3e-23 110.5 53 92.5
arahy.Tifrunner.gnm1.ann1.TDDH8C Arachis hypogaea HOM05D000963 ORTHO05D004715 7.3e-23 110.5 53 92.5
arahy.Tifrunner.gnm1.ann1.UGP0DD Arachis hypogaea HOM05D000963 ORTHO05D004715 7.3e-23 110.5 53 92.5
arahy.Tifrunner.gnm1.ann1.WD30LQ Arachis hypogaea HOM05D000963 ORTHO05D004715 7.3e-23 110.5 53 92.5
arahy.Tifrunner.gnm1.ann1.WSE485 Arachis hypogaea HOM05D000963 ORTHO05D004715 7.3e-23 110.5 53 92.5
arahy.Tifrunner.gnm1.ann1.ZA1EMG Arachis hypogaea HOM05D000963 ORTHO05D004715 7.3e-23 110.5 53 92.5
HPP92_028383 Vanilla planifolia HOM05D000963 ORTHO05D004715 9.6e-23 110.2 99 59.6
HPP92_028406 Vanilla planifolia HOM05D000963 ORTHO05D004715 9.6e-23 110.2 99 59.6
HPP92_028415 Vanilla planifolia HOM05D000963 ORTHO05D004715 9.6e-23 110.2 99 59.6
HPP92_028419 Vanilla planifolia HOM05D000963 ORTHO05D004715 9.6e-23 110.2 99 59.6
HPP92_028432 Vanilla planifolia HOM05D000963 ORTHO05D004715 9.6e-23 110.2 99 59.6
BraSC58t46456Z Brassica rapa HOM05D000963 ORTHO05D004715 1.3e-22 109.8 51 94.1
arahy.Tifrunner.gnm1.ann1.54C0KZ Arachis hypogaea HOM05D000963 ORTHO05D004715 2.1e-22 109.0 53 90.6
Oeu050315.1 Olea europaea HOM05D000963 ORTHO05D004715 2.8e-22 108.6 97 61.9
FvH4_7g01961 Fragaria vesca HOM05D000963 ORTHO05D004715 2.2e-19 99.0 103 57.3
Oeu015131.2 Olea europaea HOM05D000963 ORTHO05D004715 2.2e-19 99.0 95 53.7
Psat3g162200 Pisum sativum HOM05D000963 ORTHO05D004715 2.9e-19 98.6 50 86.0
COL.COLO4_03191 Corchorus olitorius HOM05D000963 ORTHO05D004715 3.8e-19 98.2 96 60.4
Glyma.06G274000 Glycine max HOM05D000963 ORTHO05D004715 8.4e-19 97.1 106 53.8
Lsat_1_v5_gn_1_109481 Lactuca sativa HOM05D000963 ORTHO05D004715 8.4e-19 97.1 52 80.8
Rhsim12G0135200 Rhododendron simsii HOM05D000963 ORTHO05D004715 1.4e-18 96.3 44 93.2
Gohir.A01G139250 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.2e-18 95.1 46 93.5
Gohir.D11G164850 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.2e-18 94.7 90 60.0
arahy.Tifrunner.gnm1.ann1.0QCF99 Arachis hypogaea HOM05D000963 ORTHO05D004715 5.4e-18 94.4 44 90.9
arahy.Tifrunner.gnm1.ann1.6K111H Arachis hypogaea HOM05D000963 ORTHO05D004715 5.4e-18 94.4 44 90.9
arahy.Tifrunner.gnm1.ann1.B9EW81 Arachis hypogaea HOM05D000963 ORTHO05D004715 5.4e-18 94.4 44 90.9
arahy.Tifrunner.gnm1.ann1.NMB5YK Arachis hypogaea HOM05D000963 ORTHO05D004715 5.4e-18 94.4 44 90.9
arahy.Tifrunner.gnm1.ann1.QIDR5S Arachis hypogaea HOM05D000963 ORTHO05D004715 5.4e-18 94.4 44 90.9
BcaNung01516 Brassica carinata HOM05D000963 ORTHO05D004715 5.4e-18 94.4 87 57.5
Sc25g0002020 Simmondsia chinensis HOM05D000963 ORTHO05D004715 5.4e-18 94.4 44 90.9
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 7.1e-18 94.0 43 93.0
Hma1.2p1_0051F.1_g029250 Hydrangea macrophylla HOM05D000963 ORTHO05D004715 1.2e-17 93.2 43 90.7
TPR.G27622 Trifolium pratense HOM05D000963 ORTHO05D004715 4.6e-17 91.3 46 87.0
arahy.Tifrunner.gnm1.ann1.LM30Y3 Arachis hypogaea HOM05D000963 ORTHO05D004715 6.0e-17 90.9 44 86.4
Lsat_1_v5_gn_2_90421 Lactuca sativa HOM05D000963 ORTHO05D004715 7.9e-17 90.5 92 58.7
Actinidia23508 Actinidia chinensis HOM05D000963 ORTHO05D004715 1.3e-16 89.7 50 78.0
BolC2t10589H Brassica oleracea HOM05D000963 ORTHO05D004715 5.1e-16 87.8 47 91.5
BolSC29t60514H Brassica oleracea HOM05D000963 ORTHO05D004715 5.1e-16 87.8 47 91.5
BolSC29t60553H Brassica oleracea HOM05D000963 ORTHO05D004715 5.1e-16 87.8 47 91.5
BolSC35t60711H Brassica oleracea HOM05D000963 ORTHO05D004715 5.1e-16 87.8 47 91.5
BolSC46t60965H Brassica oleracea HOM05D000963 ORTHO05D004715 5.1e-16 87.8 47 91.5
BolSC49t61150H Brassica oleracea HOM05D000963 ORTHO05D004715 5.1e-16 87.8 47 91.5
BraSC59t46544Z Brassica rapa HOM05D000963 ORTHO05D004715 5.1e-16 87.8 47 91.5
Cpa.g.sc302.1 Carica papaya HOM05D000963 ORTHO05D004715 6.7e-16 87.4 47 91.5
CsaV3_2G008200 Cucumis sativus L. HOM05D000963 ORTHO05D004715 6.7e-16 87.4 40 92.5
Gohir.A01G119775 Gossypium hirsutum HOM05D000963 ORTHO05D004715 8.7e-16 87.0 47 89.4
Dinv05169 Davidia involucrata HOM05D000963 ORTHO05D004715 1.1e-15 86.7 43 86.0
BolSC43t60811H Brassica oleracea HOM05D000963 ORTHO05D004715 1.5e-15 86.3 46 91.3
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 1.9e-15 85.9 43 83.7
BolSC45t60901H Brassica oleracea HOM05D000963 ORTHO05D004715 1.9e-15 85.9 47 89.4
Medtr1g105230 Medicago truncatula HOM05D000963 ORTHO05D004715 1.9e-15 85.9 42 88.1
Oeu054713.1 Olea europaea HOM05D000963 ORTHO05D004715 1.9e-15 85.9 47 89.4
VMungo0331G0858 Vigna mungo HOM05D000963 ORTHO05D004715 2.5e-15 85.5 53 73.6
Potri.002G263451 Populus trichocarpa HOM05D000963 ORTHO05D004715 5.6e-15 84.3 47 89.4
EL10Ac7g17374 Beta vulgaris HOM05D000963 ORTHO05D004715 7.4e-15 84.0 45 88.9
Phvul.003G259600 Phaseolus vulgaris HOM05D000963 ORTHO05D004715 1.6e-14 82.8 53 73.6
EL10Ac7g17381 Beta vulgaris HOM05D000963 ORTHO05D004715 2.8e-14 82.0 44 86.4
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 2.8e-14 82.0 47 78.7
Nitab4.5_0004137g0020 Nicotiana tabacum HOM05D000963 ORTHO05D004715 2.8e-14 82.0 92 56.5
Gorai.002G027900 Gossypium raimondii HOM05D000963 ORTHO05D004715 3.7e-14 81.6 39 87.2
BolC2t10606H Brassica oleracea HOM05D000963 ORTHO05D004715 4.8e-14 81.3 48 87.5
BraSC179t45779Z Brassica rapa HOM05D000963 ORTHO05D004715 4.8e-14 81.3 44 90.9
Lj4g0000207 Lotus japonicus HOM05D000963 ORTHO05D004715 1.4e-13 79.7 41 92.7
CAN.G1594.2 Capsicum annuum HOM05D016096 ORTHO05D016167 4.0e-13 78.2 42 85.7
Gohir.D01G023469 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.0e-13 78.2 39 87.2
arahy.Tifrunner.gnm1.ann1.HN8ZWX Arachis hypogaea HOM05D000963 ORTHO05D004715 2.0e-12 75.9 41 87.8
Thecc.09G087300 Theobroma cacao HOM05D000963 ORTHO05D004715 2.6e-12 75.5 43 88.4
FAN06G2610 Fragaria x ananassa HOM05D000963 ORTHO05D004715 5.8e-12 74.3 38 92.1
Gorai.002G200300 Gossypium raimondii HOM05D000963 ORTHO05D004715 2.2e-11 72.4 35 88.6
Gohir.A04G039030 Gossypium hirsutum HOM05D000963 ORTHO05D004715 8.4e-11 70.5 34 91.2
Manes.18G094701 Manihot esculenta HOM05D000963 ORTHO05D004715 1.4e-10 69.7 44 77.3
Nitab4.5_0007400g0120 Nicotiana tabacum HOM05D000963 ORTHO05D004715 1.6e-09 66.2 93 48.4
Psat5g119040 Pisum sativum HOM05D000963 ORTHO05D004715 1.6e-09 66.2 33 84.8
SabraPtG0005400 Salix brachista HOM05D000963 ORTHO05D004715 1.3e-08 63.2 84 47.6
FAN01G1433 Fragaria x ananassa HOM05D000963 ORTHO05D004715 1.9e-07 59.3 38 78.9
DCAR_017253 Daucus carota HOM05D000963 ORTHO05D004715 7.4e-07 57.4 32 84.4
Sabra08G0089800 Salix brachista HOM05D000963 ORTHO05D004715 7.4e-07 57.4 65 52.3


User provided reference genes

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