Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016813 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D016406 8.9e-31 136.3 71 100.0
Cpa.g.sc26.235 Carica papaya HOM05D000278 ORTHO05D004673 3.0e-26 121.3 69 88.4
Gohir.A05G255100 Gossypium hirsutum HOM05D000278 ORTHO05D004673 3.0e-26 121.3 69 88.4
Gorai.009G268200 Gossypium raimondii HOM05D000278 ORTHO05D004673 3.0e-26 121.3 69 88.4
Rhsim04G0232000 Rhododendron simsii HOM05D000278 ORTHO05D004673 3.0e-26 121.3 69 87.0
Thecc.08G054800 Theobroma cacao HOM05D000278 ORTHO05D004673 3.9e-26 120.9 69 87.0
SalBow6G3216 Salvia bowleyana HOM05D000278 ORTHO05D004673 5.0e-26 120.6 69 87.0
unitig_744.g24606 Utricularia gibba HOM05D000278 ORTHO05D004673 5.0e-26 120.6 70 87.1
Duzib116G0529 Durio zibethinus HOM05D000278 ORTHO05D004673 6.6e-26 120.2 69 87.0
Migut.C00506 Erythranthe guttata HOM05D000278 ORTHO05D004673 6.6e-26 120.2 69 85.5
SGA_v2.0_scaffold25G11193 Striga asiatica HOM05D000278 ORTHO05D004673 6.6e-26 120.2 69 87.0
Duzib093G1085 Durio zibethinus HOM05D000278 ORTHO05D004673 8.6e-26 119.8 69 87.0
Gohir.D05G184500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 8.6e-26 119.8 69 87.0
Gohir.D05G256700 Gossypium hirsutum HOM05D000278 ORTHO05D004673 8.6e-26 119.8 69 87.0
Gorai.009G190000 Gossypium raimondii HOM05D000278 ORTHO05D004673 8.6e-26 119.8 69 87.0
Cc01_g07800 Coffea canephora HOM05D000278 ORTHO05D004673 1.1e-25 119.4 69 87.0
HanXRQChr02g0048731 Helianthus annuus HOM05D000278 ORTHO05D004673 1.5e-25 119.0 69 85.5
HanXRQChr05g0150641 Helianthus annuus HOM05D000278 ORTHO05D004673 1.5e-25 119.0 69 85.5
HanXRQChr05g0150651 Helianthus annuus HOM05D000278 ORTHO05D004673 1.5e-25 119.0 69 85.5
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.9e-25 118.6 69 87.0
Duzib041G0210 Durio zibethinus HOM05D000278 ORTHO05D004673 1.9e-25 118.6 69 85.5
Gohir.A05G181500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 1.9e-25 118.6 69 85.5
Rhsim06G0057200 Rhododendron simsii HOM05D000278 ORTHO05D004673 1.9e-25 118.6 69 84.1
RhsimUnG0194000 Rhododendron simsii HOM05D000278 ORTHO05D004673 1.9e-25 118.6 69 84.1
CSS0027085 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D016406 2.5e-25 118.2 70 87.1
COL.COLO4_26052 Corchorus olitorius HOM05D000278 ORTHO05D004673 2.5e-25 118.2 69 84.1
Dinv39570 Davidia involucrata HOM05D000278 ORTHO05D004673 2.5e-25 118.2 67 88.1
ECA240G2245 Erigeron canadensis HOM05D000278 ORTHO05D004673 2.5e-25 118.2 69 84.1
Lsat_1_v5_gn_5_47521 Lactuca sativa HOM05D000278 ORTHO05D004673 2.5e-25 118.2 69 84.1
Dinv32530 Davidia involucrata HOM05D000278 ORTHO05D004673 3.3e-25 117.9 69 85.5
Peaxi162Scf00892g00123 Petunia axillaris HOM05D000278 ORTHO05D004673 3.3e-25 117.9 69 84.1
Actinidia29778 Actinidia chinensis HOM05D000278 ORTHO05D004673 4.3e-25 117.5 69 87.0
MSTRG.24226 Avicennia marina HOM05D000278 ORTHO05D004673 4.3e-25 117.5 69 85.5
ClCG11G001640 Citrullus lanatus HOM05D000278 ORTHO05D004673 4.3e-25 117.5 69 84.1
MELO3C004636.2 Cucumis melo HOM05D000278 ORTHO05D004673 4.3e-25 117.5 69 84.1
Dinv31912 Davidia involucrata HOM05D000278 ORTHO05D004673 4.3e-25 117.5 70 82.9
Hma1.2p1_1100F.1_g257140 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 4.3e-25 117.5 70 82.9
CSS0037161 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004673 5.6e-25 117.1 69 85.5
THA.LOC104800468 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 5.6e-25 117.1 69 87.0
TAR381G1660 Trochodendron aralioides HOM05D000278 ORTHO05D004673 5.6e-25 117.1 69 84.1
MSTRG.22358 Avicennia marina HOM05D000278 ORTHO05D004673 7.3e-25 116.7 69 82.6
CiPaw.07G141600 Carya illinoinensis HOM05D000278 ORTHO05D004673 7.3e-25 116.7 69 87.0
Eucgr.F03537 Eucalyptus grandis HOM05D000278 ORTHO05D004673 7.3e-25 116.7 69 85.5
Potri.001G341100 Populus trichocarpa HOM05D000278 ORTHO05D004673 7.3e-25 116.7 69 85.5
SGA_v2.0_scaffold275G46553 Striga asiatica HOM05D000278 ORTHO05D004673 7.3e-25 116.7 69 85.5
Haze_22737 Corylus avellana HOM05D000278 ORTHO05D004673 9.5e-25 116.3 69 84.1
CsaV3_2G001340 Cucumis sativus L. HOM05D000278 ORTHO05D004673 9.5e-25 116.3 69 82.6
DCAR_009520 Daucus carota HOM05D000278 ORTHO05D004673 9.5e-25 116.3 69 82.6
Nitab4.5_0000329g0270 Nicotiana tabacum HOM05D000278 ORTHO05D004673 9.5e-25 116.3 69 82.6
Nitab4.5_0001163g0130 Nicotiana tabacum HOM05D000278 ORTHO05D004673 9.5e-25 116.3 67 86.6
Nitab4.5_0005092g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004673 9.5e-25 116.3 69 82.6
Nitab4.5_0012306g0010 Nicotiana tabacum HOM05D000278 ORTHO05D004673 9.5e-25 116.3 67 86.6
Actinidia37961 Actinidia chinensis HOM05D000278 ORTHO05D004673 1.2e-24 115.9 69 85.5
Lsat_1_v5_gn_3_23880 Lactuca sativa HOM05D000278 ORTHO05D004673 1.2e-24 115.9 69 82.6
vmacro19453 Vaccinium macrocarpon HOM05D000278 ORTHO05D004673 1.2e-24 115.9 69 84.1
Carub.0006s1918 Capsella rubella HOM05D000278 ORTHO05D004673 1.6e-24 115.5 69 85.5
GSVIVG01008708001 Vitis vinifera HOM05D000278 ORTHO05D004673 1.6e-24 115.5 69 82.6
AL6G32440 Arabidopsis lyrata HOM05D000278 ORTHO05D004673 2.1e-24 115.2 69 85.5
CAN.G546.19 Capsicum annuum HOM05D000278 ORTHO05D004673 2.1e-24 115.2 69 81.2
Sed0016101 Sechium edule HOM05D000278 ORTHO05D004673 2.1e-24 115.2 69 82.6
Solyc11g069000.2 Solanum lycopersicum HOM05D000278 ORTHO05D004673 2.1e-24 115.2 69 81.2
Sopen08g014310 Solanum pennellii HOM05D000278 ORTHO05D004673 2.1e-24 115.2 69 81.2
Sopen11g027710 Solanum pennellii HOM05D000278 ORTHO05D004673 2.1e-24 115.2 69 81.2
PGSC0003DMG400019637 Solanum tuberosum HOM05D000278 ORTHO05D004673 2.1e-24 115.2 69 81.2
Potri.006G128600 Populus trichocarpa HOM05D000278 ORTHO05D004673 2.8e-24 114.8 69 82.6
Prupe.1G357200 Prunus persica HOM05D000278 ORTHO05D004673 2.8e-24 114.8 69 82.6
BcaB05g22804 Brassica carinata HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
BcaB08g37325 Brassica carinata HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
BcaC03g13811 Brassica carinata HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
BcaC04g19481 Brassica carinata HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
A10p19170 Brassica napus HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
BNapus_Darmor_BZH_scaffold_38p01290 Brassica napus HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
C09p55210 Brassica napus HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
BolC2t07080H Brassica oleracea HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
BolC9t58390H Brassica oleracea HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
BraA10t43992Z Brassica rapa HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
CARHR191960 Cardamine hirsuta HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
Lj4A877T44 Lonicera japonica HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 81.2
Nn6g31844 Nelumbo nucifera HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 82.6
QL02p013553 Quercus lobata HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
Sp6g23630 Schrenkiella parvula HOM05D000278 ORTHO05D004673 3.6e-24 114.4 69 84.1
A03p10340 Brassica napus HOM05D000278 ORTHO05D004673 4.7e-24 114.0 69 84.1
C03p11870 Brassica napus HOM05D000278 ORTHO05D004673 4.7e-24 114.0 69 84.1
BolC3t13657H Brassica oleracea HOM05D000278 ORTHO05D004673 4.7e-24 114.0 69 84.1
BraA03t10345Z Brassica rapa HOM05D000278 ORTHO05D004673 4.7e-24 114.0 69 84.1
Ciclev10000836m.g Citrus clementina HOM05D000278 ORTHO05D004673 4.7e-24 114.0 69 84.1
Eucgr.F01711 Eucalyptus grandis HOM05D000278 ORTHO05D004673 4.7e-24 114.0 69 81.2
FvH4_2g37790 Fragaria vesca HOM05D000278 ORTHO05D004673 4.7e-24 114.0 69 82.6
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 4.7e-24 114.0 69 82.6
FAN20G0278 Fragaria x ananassa HOM05D000278 ORTHO05D004673 4.7e-24 114.0 69 82.6
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 4.7e-24 114.0 69 82.6
PGR083G0799 Punica granatum HOM05D000278 ORTHO05D004673 6.2e-24 113.6 69 81.2
Sed0026774 Sechium edule HOM05D000201 ORTHO05D004673 6.2e-24 113.6 69 81.2
Aa31LG1G13870 Aethionema arabicum HOM05D000278 ORTHO05D004673 1.1e-23 112.8 69 81.2
AT5G20890 Arabidopsis thaliana HOM05D000278 ORTHO05D004673 1.1e-23 112.8 69 82.6
C02p10490 Brassica napus HOM05D000278 ORTHO05D004673 1.1e-23 112.8 69 82.6
BraA02t05601Z Brassica rapa HOM05D000278 ORTHO05D004673 1.1e-23 112.8 69 82.6
AUR62023775 Chenopodium quinoa HOM05D000278 ORTHO05D004673 1.1e-23 112.8 69 78.3
Manes.05G141000 Manihot esculenta HOM05D000278 ORTHO05D004673 1.1e-23 112.8 69 82.6
Manes.18G007600 Manihot esculenta HOM05D000278 ORTHO05D004673 1.1e-23 112.8 69 82.6
THA.LOC104816947 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 1.1e-23 112.8 69 82.6
Os03g0619400 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004673 1.4e-23 112.5 69 79.7
Aqoxy6G01859 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 1.8e-23 112.1 69 78.3
Aqoxy7G00805 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 2.3e-23 111.7 69 78.3
Thhalv10013239m.g Eutrema salsugineum HOM05D000278 ORTHO05D004673 2.3e-23 111.7 69 81.2
MD15G1004500 Malus domestica HOM05D000278 ORTHO05D004673 2.3e-23 111.7 69 79.7
Atru.chr13.180 Acer truncatum HOM05D000278 ORTHO05D004673 3.1e-23 111.3 69 79.7
RcHm_v2.0_Chr6g0303921 Rosa chinensis HOM05D000278 ORTHO05D004673 3.1e-23 111.3 69 79.7
Hund12360 Selenicereus undatus HOM05D000278 ORTHO05D004673 3.1e-23 111.3 69 78.3
MBI08_g05384_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004673 4.0e-23 110.9 69 81.2
Nn5g30892 Nelumbo nucifera HOM05D000278 ORTHO05D004673 4.0e-23 110.9 69 76.8
PSO541G0609 Papaver somniferum HOM05D000278 ORTHO05D004673 4.0e-23 110.9 69 78.3
PSO675G6493 Papaver somniferum HOM05D000278 ORTHO05D004673 4.0e-23 110.9 69 78.3
MD08G1005100 Malus domestica HOM05D000278 ORTHO05D004673 5.2e-23 110.5 69 79.7
EL10Ac3g06108 Beta vulgaris HOM05D000278 ORTHO05D004673 6.8e-23 110.2 69 76.8
CAN.G1001.51 Capsicum annuum HOM05D000278 ORTHO05D004673 6.8e-23 110.2 69 76.8
AUR62002414 Chenopodium quinoa HOM05D000278 ORTHO05D004673 6.8e-23 110.2 69 76.8
THA.LOC104826462 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 8.9e-23 109.8 69 81.2
Zm00001eb127430 Zea mays HOM05D000278 ORTHO05D004673 1.2e-22 109.4 69 76.8
TAR625G1357 Trochodendron aralioides HOM05D000278 ORTHO05D004673 1.5e-22 109.0 69 79.7
Lj6g0017523 Lotus japonicus HOM05D000278 ORTHO05D004673 2.0e-22 108.6 69 79.7
Os05g0556700 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004673 2.0e-22 108.6 69 78.3
HPP92_017262 Vanilla planifolia HOM05D000278 ORTHO05D004673 2.0e-22 108.6 69 78.3
Nn3g20772 Nelumbo nucifera HOM05D000513 ORTHO05D011790 2.6e-22 108.2 69 75.4
arahy.Tifrunner.gnm1.ann1.456QL1 Arachis hypogaea HOM05D000278 ORTHO05D004673 3.4e-22 107.8 69 78.3
arahy.Tifrunner.gnm1.ann1.N7I05Z Arachis hypogaea HOM05D000278 ORTHO05D004673 3.4e-22 107.8 69 78.3
TWI56G0512 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 3.4e-22 107.8 69 76.8
Lj1g0004523 Lotus japonicus HOM05D000278 ORTHO05D004673 4.4e-22 107.5 69 78.3
PGSC0003DMG400012727 Solanum tuberosum HOM05D000278 ORTHO05D004673 4.4e-22 107.5 69 78.3
TWI36G1689 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 4.4e-22 107.5 69 76.8
Ah.07g202860 Amaranthus hybridus HOM05D000278 ORTHO05D004673 5.8e-22 107.1 68 76.5
Ca_05203_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 5.8e-22 107.1 69 79.7
ATR0049G084 Amborella trichopoda HOM05D000278 ORTHO05D004673 7.5e-22 106.7 69 78.3
Glyma.12G087300 Glycine max HOM05D000278 ORTHO05D004673 7.5e-22 106.7 69 78.3
Lalb_Chr19g0124741 Lupinus albus HOM05D000278 ORTHO05D004673 1.3e-21 105.9 69 78.3
Glyma.11G185500 Glycine max HOM05D000278 ORTHO05D004673 1.7e-21 105.5 69 76.8
Lalb_Chr03g0043101 Lupinus albus HOM05D000278 ORTHO05D004673 1.7e-21 105.5 69 76.8
Phvul.011G092200 Phaseolus vulgaris HOM05D000278 ORTHO05D004673 1.7e-21 105.5 69 76.8
Medtr7g067470 Medicago truncatula HOM05D000278 ORTHO05D004673 2.2e-21 105.1 69 76.8
Medtr7g113470 Medicago truncatula HOM05D000278 ORTHO05D004673 2.2e-21 105.1 69 76.8
TPR.G4726 Trifolium pratense HOM05D000278 ORTHO05D004673 2.2e-21 105.1 69 76.8
Nn1g03634 Nelumbo nucifera HOM05D000278 ORTHO05D004673 2.9e-21 104.8 69 73.9
Ah.13g073410 Amaranthus hybridus HOM05D000278 ORTHO05D004673 3.7e-21 104.4 69 73.9
Ca_07625_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 4.9e-21 104.0 69 76.8
TPR.G31895 Trifolium pratense HOM05D000278 ORTHO05D004673 4.9e-21 104.0 69 75.4
Sabra06G0101200 Salix brachista HOM05D000054 ORTHO05D000286 1.4e-20 102.4 68 76.5
Nn1g01173 Nelumbo nucifera HOM05D000278 ORTHO05D016406 2.4e-20 101.7 68 70.6
Nn2g11830 Nelumbo nucifera HOM05D000278 ORTHO05D016406 3.2e-20 101.3 69 71.0
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 3.5e-19 97.8 69 73.9
PRCOL_00000789 Prasinoderma coloniale HOM05D000278 ORTHO05D004673 1.3e-18 95.9 69 71.0
Pp3c6_15940 Physcomitrium patens HOM05D000278 ORTHO05D004673 5.6e-17 90.5 69 65.2
Mapoly0071s0007 Marchantia polymorpha HOM05D000278 ORTHO05D004673 9.5e-17 89.7 69 65.2
SMO116G0467 Selaginella moellendorffii HOM05D000278 ORTHO05D004673 9.5e-17 89.7 69 65.2
Pp3c5_16830 Physcomitrium patens HOM05D000278 ORTHO05D004673 2.1e-16 88.6 69 62.3
Rhsim04G0226800 Rhododendron simsii HOM05D000278 ORTHO05D016406 4.7e-16 87.4 52 84.6
CBR_g20448 Chara braunii HOM05D000278 ORTHO05D004673 1.2e-14 82.8 72 62.5
CAN.G1432.19 Capsicum annuum HOM05D000278 ORTHO05D004673 2.0e-14 82.0 48 87.5
MCO14G488 Micromonas commoda HOM05D000278 ORTHO05D004673 1.3e-13 79.3 67 56.7
Cre09.g416750 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004673 2.9e-13 78.2 68 60.3
Rhsim02G0162100 Rhododendron simsii HOM05D000278 ORTHO05D016406 4.1e-12 74.3 44 81.8
Cc10_g11410 Coffea canephora HOM05D000278 ORTHO05D016406 1.6e-11 72.4 69 59.4
Medtr3g466600 Medicago truncatula HOM05D000278 ORTHO05D016406 2.7e-11 71.6 50 70.0
Cfa026985 Carpinus fangiana HOM05D000278 ORTHO05D004673 2.3e-10 68.6 66 50.0
Medtr3g465910 Medicago truncatula HOM05D000079 ORTHO05D003781 3.9e-10 67.8 47 74.5
Haze_26336 Corylus avellana HOM05D000278 ORTHO05D004673 8.6e-10 66.6 70 45.7
Nn4g25474 Nelumbo nucifera HOM05D000278 ORTHO05D004673 3.3e-09 64.7 43 67.4
Atru.chr12.2046 Acer truncatum HOM05D000278 ORTHO05D016406 1.6e-08 62.4 66 54.5
Hma1.2p1_1100F.1_g257110 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 1.8e-07 58.9 57 54.4
Dinv18934 Davidia involucrata HOM05D000278 ORTHO05D016406 6.8e-07 57.0 33 81.8


User provided reference genes

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