Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.7e-253 877.5 472 100.0
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.2e-221 773.1 424 100.0
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 3.6e-152 542.3 427 73.5
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.6e-144 516.9 430 69.1
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.0e-139 500.0 424 66.5
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.0e-134 483.4 425 63.1
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 1.4e-132 477.2 434 68.7
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 4.5e-123 445.7 424 65.8
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 6.1e-120 435.3 425 62.8
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 1.4e-116 424.1 433 61.9
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 3.9e-114 416.0 424 58.3
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.8e-112 409.8 427 57.4
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 3.1e-111 406.4 424 59.2
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.2e-111 405.6 432 56.0
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.2e-110 404.4 432 55.8
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.8e-110 402.1 432 55.6
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 4.9e-109 399.1 451 58.1
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 3.2e-108 396.4 424 56.6
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 2.1e-107 393.7 430 56.7
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 2.3e-106 390.2 438 54.1
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 8.1e-104 381.7 437 57.0
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 8.1e-104 381.7 438 57.3
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.1e-103 381.3 425 55.5
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 1.3e-101 374.4 435 55.6
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 8.3e-101 371.7 423 56.7
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 1.1e-100 371.3 425 57.4
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.4e-100 370.2 427 53.9
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.1e-99 367.1 442 52.9
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 2.3e-98 363.6 422 53.1
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.3e-98 363.6 431 56.1
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.9e-98 362.8 436 54.6
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 6.6e-98 362.1 423 56.5
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 8.6e-98 361.7 434 55.5
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.6e-97 359.0 422 52.8
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.2e-96 357.8 441 54.0
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.2e-95 352.4 425 52.5
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 8.9e-95 351.7 433 54.3
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.6e-94 350.1 430 54.2
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 7.6e-94 348.6 428 53.7
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.7e-93 347.4 428 51.2
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 4.9e-93 345.9 435 53.6
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 8.4e-93 345.1 430 53.3
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 1.9e-92 344.0 440 52.3
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.2e-91 341.3 425 51.1
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 7.8e-91 338.6 431 54.8
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 6.6e-90 335.5 428 50.5
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.9e-89 334.0 446 49.3
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 9.6e-89 331.6 434 48.4
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 4.7e-88 329.3 426 49.5
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 3.1e-87 326.6 436 49.3
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 6.9e-87 325.5 428 50.7
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 1.5e-86 324.3 431 52.0
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.6e-86 323.6 423 51.1
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 4.9e-85 319.3 446 48.0
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.4e-84 317.8 434 47.9
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 7.8e-83 312.0 423 47.8
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 7.8e-83 312.0 435 50.3
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.3e-82 311.2 429 48.5
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.5e-81 307.0 429 48.3
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 2.5e-81 307.0 428 51.2
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 4.3e-81 306.2 428 50.2
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 9.6e-81 305.1 433 48.0
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 2.1e-80 303.9 428 50.2
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 2.8e-80 303.5 435 46.9
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 8.1e-80 302.0 425 49.9
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 1.4e-79 301.2 429 47.1
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 2.4e-79 300.4 447 47.0
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.2e-78 298.1 435 47.6
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.6e-78 297.0 328 55.5
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 3.4e-78 296.6 433 49.2
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 7.6e-78 295.4 425 49.9
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 3.8e-77 293.1 426 46.7
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 3.8e-77 293.1 434 50.7
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 8.4e-77 292.0 449 45.0
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 4.2e-76 289.7 432 47.7
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 9.3e-76 288.5 433 46.7
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 3.5e-75 286.6 425 47.5
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 6.0e-75 285.8 433 46.4
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.8e-74 284.3 432 47.0
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.9e-74 283.1 464 45.7
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.9e-74 283.1 425 47.1
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 6.7e-74 282.3 433 44.8
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 6.7e-74 282.3 459 47.3
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 2.5e-73 280.4 441 46.5
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 3.3e-73 280.0 431 44.8
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.1e-71 275.0 441 45.8
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.4e-71 274.6 441 45.4
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 1.2e-70 271.6 447 43.4
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 8.4e-69 265.4 296 51.0
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.2e-68 263.1 432 43.3
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 7.1e-68 262.3 429 41.5
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 9.3e-68 261.9 446 42.8
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.7e-67 260.4 423 44.0
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 3.5e-67 260.0 431 45.0
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 6.7e-66 255.8 427 45.0
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.8e-63 247.7 436 40.8
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.0e-63 246.5 444 42.6
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 4.0e-63 246.5 450 41.8
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 9.0e-63 245.4 362 49.2
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.7e-61 241.1 442 41.2
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.2e-61 240.7 433 41.6
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 2.9e-61 240.4 422 40.3
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.9e-61 240.4 448 42.0
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.9e-60 237.7 424 40.1
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 3.2e-60 236.9 431 42.0
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 9.3e-60 235.3 425 40.0
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.6e-59 234.6 425 39.8
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.7e-59 233.8 437 41.0
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.3e-58 231.5 319 44.5
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 6.7e-58 229.2 423 39.0
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 6.7e-58 229.2 424 41.7
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.4e-55 221.5 359 41.8
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 2.6e-54 217.2 428 42.1
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 4.5e-54 216.5 428 42.3
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 2.2e-53 214.2 445 40.0
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 9.4e-52 208.8 429 38.5
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.6e-51 208.0 425 40.2
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 1.4e-50 204.9 291 46.0
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 3.9e-50 203.4 435 40.5
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 2.5e-49 200.7 432 38.4
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 3.7e-48 196.8 440 39.5
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.4e-47 194.1 273 46.9
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 3.1e-47 193.7 440 39.3
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.5e-46 191.4 446 36.8
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 4.5e-46 189.9 429 38.9
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 5.9e-46 189.5 443 40.2
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 2.5e-44 184.1 192 55.2
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 3.2e-44 183.7 414 36.0
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 4.2e-44 183.3 414 35.7
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 5.5e-44 183.0 414 35.7
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.6e-43 180.3 426 34.3
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 1.0e-42 178.7 301 44.9
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 2.3e-42 177.6 426 37.1
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 6.7e-42 176.0 429 35.7
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 1.8e-39 167.9 122 73.8
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.8e-39 167.9 368 38.3
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 2.4e-39 167.5 389 34.7
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.3e-37 161.8 429 35.9
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.4e-36 158.3 437 33.2
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 9.4e-36 155.6 363 35.8
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 2.7e-35 154.1 279 41.9
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 8.0e-35 152.5 345 35.7
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.4e-34 151.8 300 40.3
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.7e-32 144.8 444 30.4
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.8e-31 141.4 436 33.9
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 5.9e-30 136.3 140 65.0
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 5.9e-30 136.3 450 32.4
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 6.5e-29 132.9 144 52.8
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 7.2e-28 129.4 521 29.2
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 2.6e-25 120.9 86 69.8
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 2.6e-25 120.9 167 44.9
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 7.0e-23 112.8 98 59.2
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 1.0e-21 109.0 214 41.1
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 1.9e-20 104.8 440 28.9
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 1.1e-15 89.0 213 29.1
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 4.1e-15 87.0 58 74.1
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.2e-14 85.5 426 27.7
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 4.5e-14 83.6 221 35.7
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.3e-13 82.0 239 32.2
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.7e-13 81.6 106 41.5
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 6.6e-13 79.7 213 33.3
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.4e-10 72.0 72 50.0
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 3.0e-10 70.9 231 29.4
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 2.6e-09 67.8 203 32.5
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.7e-09 66.6 91 40.7
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 7.5e-09 66.2 314 27.1
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 9.8e-09 65.9 95 40.0
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 1.7e-08 65.1 122 41.8
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 2.2e-08 64.7 43 69.8
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.9e-08 63.5 123 39.8
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 6.3e-08 63.2 118 36.4
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.4e-07 61.2 177 29.4
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.2e-07 60.8 188 29.8
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 3.5e-06 57.4 236 26.7
Glyma.03G074233 Glycine max HOM05D003987 ORTHO05D004532 7.8e-06 56.2 123 36.6


User provided reference genes

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