Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016790 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D007542 2.2e-51 205.3 102 100.0
CSS0004343 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D007542 1.0e-48 196.4 99 98.0
Actinidia12338 Actinidia chinensis HOM05D000189 ORTHO05D007542 2.0e-36 155.6 98 79.6
Rhsim06G0182900 Rhododendron simsii HOM05D000189 ORTHO05D007542 1.6e-33 146.0 98 78.6
vmacro12033 Vaccinium macrocarpon HOM05D000189 ORTHO05D007542 5.7e-31 137.5 84 81.0
Rhsim06G0181900 Rhododendron simsii HOM05D000189 ORTHO05D007542 3.7e-30 134.8 90 78.9
Cfa004328 Carpinus fangiana HOM05D000189 ORTHO05D007542 3.5e-28 128.3 78 74.4
Dinv21338 Davidia involucrata HOM05D000189 ORTHO05D007542 3.5e-28 128.3 96 70.8
Potri.014G198300 Populus trichocarpa HOM05D000189 ORTHO05D007542 3.5e-28 128.3 107 65.4
Hund22661 Selenicereus undatus HOM05D000189 ORTHO05D007542 4.5e-28 127.9 82 74.4
RcHm_v2.0_Chr2g0101221 Rosa chinensis HOM05D000189 ORTHO05D007542 1.7e-27 125.9 95 64.2
Sc19g0002480 Simmondsia chinensis HOM05D000189 ORTHO05D007542 1.7e-27 125.9 87 71.3
Atru.chr6.3465 Acer truncatum HOM05D000189 ORTHO05D007542 2.3e-27 125.6 80 76.2
Sabra14G0132100 Salix brachista HOM05D000189 ORTHO05D007542 2.3e-27 125.6 107 63.6
GSVIVG01030147001 Vitis vinifera HOM05D000189 ORTHO05D007542 2.3e-27 125.6 76 76.3
Ah.13g073100 Amaranthus hybridus HOM05D000189 ORTHO05D007542 2.9e-27 125.2 81 72.8
EL10Ac3g06200 Beta vulgaris HOM05D000189 ORTHO05D007542 2.9e-27 125.2 76 77.6
Ciclev10015267m.g Citrus clementina HOM05D000189 ORTHO05D007542 2.9e-27 125.2 78 75.6
FvH4_1g13050 Fragaria vesca HOM05D000189 ORTHO05D007542 2.9e-27 125.2 93 63.4
MD15G1259200 Malus domestica HOM05D000189 ORTHO05D007542 5.0e-27 124.4 96 65.6
FAN26G1553 Fragaria x ananassa HOM05D000189 ORTHO05D007542 6.5e-27 124.0 93 63.4
Nitab4.5_0002209g0080 Nicotiana tabacum HOM05D000189 ORTHO05D007542 8.6e-27 123.6 85 69.4
PGR102G2126 Punica granatum HOM05D000189 ORTHO05D007542 1.1e-26 123.2 107 61.7
DCAR_019648 Daucus carota HOM05D000189 ORTHO05D007542 1.5e-26 122.9 87 66.7
QL06p046579 Quercus lobata HOM05D000189 ORTHO05D007542 1.5e-26 122.9 81 71.6
Hma1.2p1_0854F.1_g228810 Hydrangea macrophylla HOM05D000189 ORTHO05D007542 2.5e-26 122.1 76 76.3
CAN.G904.9 Capsicum annuum HOM05D000189 ORTHO05D007542 3.3e-26 121.7 93 62.4
Solyc10g007680.4 Solanum lycopersicum HOM05D000189 ORTHO05D007542 3.3e-26 121.7 85 70.6
Migut.H02084 Erythranthe guttata HOM05D000189 ORTHO05D007542 4.2e-26 121.3 86 68.6
Nitab4.5_0000923g0210 Nicotiana tabacum HOM05D000189 ORTHO05D007542 4.2e-26 121.3 85 68.2
Peaxi162Scf00035g02215 Petunia axillaris HOM05D000189 ORTHO05D007542 4.2e-26 121.3 85 69.4
FAN28G1639 Fragaria x ananassa HOM05D000189 ORTHO05D007542 5.5e-26 120.9 81 67.9
Prupe.7G156600 Prunus persica HOM05D000189 ORTHO05D007542 5.5e-26 120.9 96 64.6
Lsat_1_v5_gn_7_99380 Lactuca sativa HOM05D000189 ORTHO05D007542 7.2e-26 120.6 78 73.1
Sopen10g003590 Solanum pennellii HOM05D000189 ORTHO05D007542 7.2e-26 120.6 85 69.4
TAR626G1862 Trochodendron aralioides HOM05D000189 ORTHO05D007542 7.2e-26 120.6 89 68.5
PGSC0003DMG400021245 Solanum tuberosum HOM05D000189 ORTHO05D007542 9.5e-26 120.2 85 68.2
TWI18G0667 Tripterygium wilfordii HOM05D000189 ORTHO05D007542 9.5e-26 120.2 95 63.2
CiPaw.02G019100 Carya illinoinensis HOM05D000189 ORTHO05D007542 1.6e-25 119.4 78 71.8
Sed0013015 Sechium edule HOM05D000189 ORTHO05D007542 2.1e-25 119.0 95 62.1
HanXRQChr11g0329591 Helianthus annuus HOM05D000189 ORTHO05D007542 6.1e-25 117.5 78 67.9
Oeu025317.1 Olea europaea HOM05D000189 ORTHO05D007542 8.0e-25 117.1 78 74.4
Oeu025318.1 Olea europaea HOM05D000189 ORTHO05D007542 8.0e-25 117.1 78 74.4
SHI24557 Sapria himalayana HOM05D000189 ORTHO05D007542 8.0e-25 117.1 73 72.6
MELO3C016379.2 Cucumis melo HOM05D000189 ORTHO05D007542 1.0e-24 116.7 95 62.1
Lj2g0022820 Lotus japonicus HOM05D000189 ORTHO05D007542 1.0e-24 116.7 78 69.2
Ca_24860_v3 Cicer arietinum L. HOM05D000189 ORTHO05D007542 1.8e-24 115.9 76 71.1
CsaV3_4G005710 Cucumis sativus L. HOM05D000189 ORTHO05D007542 2.3e-24 115.5 95 61.1
SGA_v2.0_scaffold130G34227 Striga asiatica HOM05D000189 ORTHO05D007542 4.0e-24 114.8 85 67.1
Manes.13G058500 Manihot esculenta HOM05D000189 ORTHO05D007542 6.8e-24 114.0 74 68.9
Thecc.01G203300 Theobroma cacao HOM05D000189 ORTHO05D007542 6.8e-24 114.0 72 72.2
TPR.G2342 Trifolium pratense HOM05D000189 ORTHO05D007542 6.8e-24 114.0 74 70.3
ClCG07G008470 Citrullus lanatus HOM05D000189 ORTHO05D007542 8.9e-24 113.6 76 69.7
Cpa.g.sc8.6 Carica papaya HOM05D000189 ORTHO05D007542 1.2e-23 113.2 78 66.7
Medtr5g020630 Medicago truncatula HOM05D000189 ORTHO05D007542 1.5e-23 112.8 76 67.1
Lalb_Chr09g0322241 Lupinus albus HOM05D000189 ORTHO05D007542 2.0e-23 112.5 92 60.9
Gohir.A11G146300 Gossypium hirsutum HOM05D000189 ORTHO05D007542 2.6e-23 112.1 72 75.0
Gorai.007G163100 Gossypium raimondii HOM05D000189 ORTHO05D007542 2.6e-23 112.1 72 75.0
Lj8A140T119 Lonicera japonica HOM05D000189 ORTHO05D007542 2.6e-23 112.1 87 69.0
Psat2g158480 Pisum sativum HOM05D000189 ORTHO05D007542 2.6e-23 112.1 78 69.2
Duzib138G0605 Durio zibethinus HOM05D000189 ORTHO05D007542 4.4e-23 111.3 72 72.2
SalBow7G2833 Salvia bowleyana HOM05D000189 ORTHO05D007542 4.4e-23 111.3 86 61.6
Cc05_g09940 Coffea canephora HOM05D000189 ORTHO05D007542 7.5e-23 110.5 75 68.0
arahy.Tifrunner.gnm1.ann1.12ETBG Arachis hypogaea HOM05D000189 ORTHO05D007542 9.8e-23 110.2 76 68.4
arahy.Tifrunner.gnm1.ann1.GD00VG Arachis hypogaea HOM05D000189 ORTHO05D007542 9.8e-23 110.2 76 68.4
Gohir.D11G152500 Gossypium hirsutum HOM05D000189 ORTHO05D007542 9.8e-23 110.2 72 73.6
Aa31LG5G15580 Aethionema arabicum HOM05D000189 ORTHO05D007542 1.3e-22 109.8 94 61.7
Carub.0008s0789 Capsella rubella HOM05D000189 ORTHO05D007542 1.7e-22 109.4 96 64.6
ECA236G1917 Erigeron canadensis HOM05D000189 ORTHO05D007542 1.7e-22 109.4 81 65.4
Aqoxy5G00453 Aquilegia oxysepala HOM05D000189 ORTHO05D007542 2.2e-22 109.0 72 68.1
COL.COLO4_19715 Corchorus olitorius HOM05D000189 ORTHO05D007542 2.2e-22 109.0 69 73.9
BraA05t22643Z Brassica rapa HOM05D000189 ORTHO05D007542 2.8e-22 108.6 89 66.3
BcaC05g29441 Brassica carinata HOM05D000189 ORTHO05D007542 3.7e-22 108.2 81 71.6
AT5G48330 Arabidopsis thaliana HOM05D000189 ORTHO05D007542 6.3e-22 107.5 71 74.6
Eucgr.B03935 Eucalyptus grandis HOM05D000189 ORTHO05D007542 8.3e-22 107.1 86 67.4
BcaC05g29440 Brassica carinata HOM05D000189 ORTHO05D007542 1.4e-21 106.3 89 65.2
AUR62023679 Chenopodium quinoa HOM05D000189 ORTHO05D007542 1.4e-21 106.3 90 62.2
CARHR183970 Cardamine hirsuta HOM05D000189 ORTHO05D007542 1.8e-21 105.9 70 74.3
AL8G21050 Arabidopsis lyrata HOM05D000189 ORTHO05D007542 2.4e-21 105.5 78 66.7
FAN23G0629 Fragaria x ananassa HOM05D000189 ORTHO05D007542 4.1e-21 104.8 84 59.5
A05p38520 Brassica napus HOM05D000189 ORTHO05D007542 5.4e-21 104.4 70 75.7
C05p57420 Brassica napus HOM05D000189 ORTHO05D007542 5.4e-21 104.4 89 65.2
BolC5t34398H Brassica oleracea HOM05D000189 ORTHO05D007542 5.4e-21 104.4 89 65.2
Thhalv10020741m.g Eutrema salsugineum HOM05D000189 ORTHO05D007542 7.0e-21 104.0 70 74.3
Sp3g08970 Schrenkiella parvula HOM05D000189 ORTHO05D007542 7.0e-21 104.0 70 75.7
Zm00001eb205920 Zea mays HOM05D000189 ORTHO05D007542 1.2e-20 103.2 95 54.7
MBI19_g41056_MAGBIO Magnolia biondii HOM05D000189 ORTHO05D007542 4.5e-20 101.3 83 61.4
PSO541G4840 Papaver somniferum HOM05D000189 ORTHO05D007542 7.8e-20 100.5 75 65.3
THA.LOC104819020 Tarenaya hassleriana HOM05D000189 ORTHO05D007542 1.0e-19 100.1 76 64.5
CDE06G2848 Ceratophyllum demersum HOM05D000189 ORTHO05D007542 1.3e-19 99.8 78 61.5
unitig_747.g21668 Utricularia gibba HOM05D000189 ORTHO05D007542 1.3e-19 99.8 89 61.8
Glyma.01G173400 Glycine max HOM05D000189 ORTHO05D007542 1.7e-19 99.4 94 58.5
SEGI_22144 Sequoiadendron giganteum HOM05D000189 ORTHO05D007542 1.7e-19 99.4 83 62.7
FAN23G1490 Fragaria x ananassa HOM05D000189 ORTHO05D007542 6.6e-19 97.4 93 55.9
HPP92_003831 Vanilla planifolia HOM05D000189 ORTHO05D007542 6.6e-19 97.4 88 56.8
Phvul.002G031800 Phaseolus vulgaris HOM05D000189 ORTHO05D007542 1.5e-18 96.3 73 65.8
SMO358G0250 Selaginella moellendorffii HOM05D000189 ORTHO05D007542 2.5e-18 95.5 78 60.3
Os02g0197500 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D007542 3.3e-18 95.1 95 49.5
Pp3c3_6440 Physcomitrium patens HOM05D000189 ORTHO05D007542 3.3e-18 95.1 74 62.2
VMungo1215G1915 Vigna mungo HOM05D000189 ORTHO05D007542 3.3e-18 95.1 73 65.8
Mapoly0060s0033 Marchantia polymorpha HOM05D000189 ORTHO05D007542 5.6e-18 94.4 86 53.5
FAN19G2871 Fragaria x ananassa HOM05D000189 ORTHO05D007542 7.3e-18 94.0 67 68.7
ATR0751G231 Amborella trichopoda HOM05D000189 ORTHO05D007542 1.6e-17 92.8 79 60.8
FvH4_1g13040 Fragaria vesca HOM05D000189 ORTHO05D007542 3.0e-16 88.6 57 68.4
BcaB07g32725 Brassica carinata HOM05D000189 ORTHO05D007542 4.0e-16 88.2 60 71.7
CBR_g30198 Chara braunii HOM05D000189 ORTHO05D007542 7.5e-15 84.0 78 52.6
AagrBONN_evm.TU.Sc2ySwM_228.4636 Anthoceros agrestis HOM05D000189 ORTHO05D007542 4.9e-14 81.3 93 47.3
AagrBONN_evm.TU.Sc2ySwM_344.1614 Anthoceros agrestis HOM05D000189 ORTHO05D007542 6.4e-14 80.9 93 47.3
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 2.7e-12 75.5 80 46.2
RcHm_v2.0_Chr7g0240851 Rosa chinensis HOM05D000189 ORTHO05D007542 2.1e-09 65.9 77 48.1
HanXRQChr01g0019121 Helianthus annuus HOM05D000189 ORTHO05D007859 4.0e-08 61.6 52 51.9
C02p03720 Brassica napus HOM05D000189 ORTHO05D007859 8.9e-08 60.5 54 51.9
BolC2t06332H Brassica oleracea HOM05D000189 ORTHO05D007859 8.9e-08 60.5 54 51.9
Carub.0006s0768 Capsella rubella HOM05D000189 ORTHO05D007859 8.9e-08 60.5 54 53.7
CARHR204300 Cardamine hirsuta HOM05D000189 ORTHO05D007859 8.9e-08 60.5 54 53.7
ECA248G3490 Erigeron canadensis HOM05D000552 ORTHO05D007859 1.2e-07 60.1 56 46.4
AL6G19440 Arabidopsis lyrata HOM05D000189 ORTHO05D007859 2.0e-07 59.3 54 51.9
AT5G08710 Arabidopsis thaliana HOM05D000189 ORTHO05D007859 2.0e-07 59.3 54 51.9
FAN26G1447 Fragaria x ananassa HOM05D000189 ORTHO05D007859 3.4e-07 58.5 63 47.6
BcaC03g13240 Brassica carinata HOM05D000189 ORTHO05D007859 4.4e-07 58.2 96 38.5
Cc00_g14750 Coffea canephora HOM05D000189 ORTHO05D007859 4.4e-07 58.2 54 50.0
SMO144G0111 Selaginella moellendorffii HOM05D000189 ORTHO05D007859 4.4e-07 58.2 71 43.7
BcaB05g21570 Brassica carinata HOM05D000189 ORTHO05D007859 5.8e-07 57.8 54 53.7
BraA02t04966Z Brassica rapa HOM05D000189 ORTHO05D007859 5.8e-07 57.8 96 38.5
TAR628G1698 Trochodendron aralioides HOM05D000189 ORTHO05D007859 5.8e-07 57.8 52 51.9
Thhalv10013591m.g Eutrema salsugineum HOM05D000189 ORTHO05D007859 7.5e-07 57.4 54 51.9
CAN.G1464.5 Capsicum annuum HOM05D000189 ORTHO05D007859 9.8e-07 57.0 49 51.0
CiPaw.04G179600 Carya illinoinensis HOM05D000189 ORTHO05D007859 9.8e-07 57.0 54 50.0
RcHm_v2.0_Chr2g0123961 Rosa chinensis HOM05D000189 ORTHO05D007859 9.8e-07 57.0 54 51.9
Eucgr.I00040 Eucalyptus grandis HOM05D000189 ORTHO05D007859 1.3e-06 56.6 52 50.0
FAN28G0421 Fragaria x ananassa HOM05D000189 ORTHO05D007859 1.7e-06 56.2 103 38.8
Peaxi162Scf00925g00013 Petunia axillaris HOM05D000189 ORTHO05D007859 1.7e-06 56.2 76 40.8
QL10p039723 Quercus lobata HOM05D000189 ORTHO05D007859 1.7e-06 56.2 51 51.0
Actinidia06600 Actinidia chinensis HOM05D000189 ORTHO05D007859 2.2e-06 55.8 52 50.0
Dinv06652 Davidia involucrata HOM05D000189 ORTHO05D007859 2.2e-06 55.8 52 46.2
Lsat_1_v5_gn_1_80940 Lactuca sativa HOM05D000189 ORTHO05D007859 2.9e-06 55.5 71 42.3
GSVIVG01022385001 Vitis vinifera HOM05D000189 ORTHO05D007859 2.9e-06 55.5 52 48.1
CSS0023610 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D007859 4.9e-06 54.7 52 46.2
Aa31LG3G17850 Aethionema arabicum HOM05D000189 ORTHO05D007859 6.4e-06 54.3 52 53.8
COL.COLO4_12122 Corchorus olitorius HOM05D000189 ORTHO05D007859 6.4e-06 54.3 52 46.2
FvH4_1g25640 Fragaria vesca HOM05D000189 ORTHO05D007859 6.4e-06 54.3 103 37.9
Os11g0545800 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D007859 6.4e-06 54.3 78 39.7
Prupe.4G282400 Prunus persica HOM05D000189 ORTHO05D007859 6.4e-06 54.3 52 44.2
Sp6g34160 Schrenkiella parvula HOM05D000189 ORTHO05D007859 6.4e-06 54.3 54 50.0
PSO210G6791 Papaver somniferum HOM05D000189 ORTHO05D007859 8.3e-06 53.9 71 43.7


User provided reference genes

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